Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03392 and CCNA_03393 are separated by 5 nucleotides CCNA_03393 and CCNA_03394 are separated by 230 nucleotides
CCNA_03392: CCNA_03392 - phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit, at 3,563,760 to 3,564,845
_03392
CCNA_03393: CCNA_03393 - phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit, at 3,564,851 to 3,565,342
_03393
CCNA_03394: CCNA_03394 - GGDEF diguanylate cyclase DgcA, at 3,565,573 to 3,566,286
_03394
Position (kb)
3564
3565
3566 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3563.853 kb on - strand at 3563.876 kb on + strand, within CCNA_03392 at 3563.895 kb on - strand, within CCNA_03392 at 3563.921 kb on - strand, within CCNA_03392 at 3563.937 kb on - strand, within CCNA_03392 at 3564.009 kb on - strand, within CCNA_03392 at 3564.015 kb on + strand, within CCNA_03392 at 3564.015 kb on + strand, within CCNA_03392 at 3564.021 kb on - strand, within CCNA_03392 at 3564.094 kb on + strand, within CCNA_03392 at 3564.099 kb on + strand, within CCNA_03392 at 3564.102 kb on - strand, within CCNA_03392 at 3564.102 kb on - strand, within CCNA_03392 at 3564.107 kb on - strand, within CCNA_03392 at 3564.159 kb on + strand, within CCNA_03392 at 3564.160 kb on + strand, within CCNA_03392 at 3564.168 kb on - strand, within CCNA_03392 at 3564.191 kb on - strand, within CCNA_03392 at 3564.191 kb on - strand, within CCNA_03392 at 3564.269 kb on + strand, within CCNA_03392 at 3564.363 kb on + strand, within CCNA_03392 at 3564.371 kb on - strand, within CCNA_03392 at 3564.371 kb on - strand, within CCNA_03392 at 3564.371 kb on - strand, within CCNA_03392 at 3564.386 kb on - strand, within CCNA_03392 at 3564.425 kb on + strand, within CCNA_03392 at 3564.453 kb on + strand, within CCNA_03392 at 3564.471 kb on + strand, within CCNA_03392 at 3564.522 kb on + strand, within CCNA_03392 at 3564.522 kb on + strand, within CCNA_03392 at 3564.522 kb on + strand, within CCNA_03392 at 3564.522 kb on + strand, within CCNA_03392 at 3564.522 kb on + strand, within CCNA_03392 at 3564.530 kb on - strand, within CCNA_03392 at 3564.530 kb on - strand, within CCNA_03392 at 3564.530 kb on - strand, within CCNA_03392 at 3564.530 kb on - strand, within CCNA_03392 at 3564.530 kb on - strand, within CCNA_03392 at 3564.539 kb on + strand, within CCNA_03392 at 3564.636 kb on + strand, within CCNA_03392 at 3564.651 kb on + strand, within CCNA_03392 at 3564.692 kb on - strand, within CCNA_03392 at 3564.692 kb on - strand, within CCNA_03392 at 3564.722 kb on + strand, within CCNA_03392 at 3564.884 kb on - strand at 3564.932 kb on - strand, within CCNA_03393 at 3564.941 kb on + strand, within CCNA_03393 at 3564.948 kb on + strand, within CCNA_03393 at 3564.949 kb on - strand, within CCNA_03393 at 3564.966 kb on - strand, within CCNA_03393 at 3564.966 kb on - strand, within CCNA_03393 at 3564.984 kb on + strand, within CCNA_03393 at 3565.029 kb on + strand, within CCNA_03393 at 3565.029 kb on + strand, within CCNA_03393 at 3565.037 kb on - strand, within CCNA_03393 at 3565.067 kb on - strand, within CCNA_03393 at 3565.067 kb on - strand, within CCNA_03393 at 3565.067 kb on - strand, within CCNA_03393 at 3565.067 kb on - strand, within CCNA_03393 at 3565.079 kb on + strand, within CCNA_03393 at 3565.117 kb on - strand, within CCNA_03393 at 3565.190 kb on + strand, within CCNA_03393 at 3565.199 kb on + strand, within CCNA_03393 at 3565.199 kb on + strand, within CCNA_03393 at 3565.199 kb on + strand, within CCNA_03393 at 3565.207 kb on - strand, within CCNA_03393 at 3565.237 kb on + strand, within CCNA_03393 at 3565.251 kb on + strand, within CCNA_03393 at 3565.319 kb on + strand at 3565.352 kb on + strand at 3565.360 kb on - strand at 3565.373 kb on + strand at 3565.381 kb on - strand at 3565.414 kb on + strand at 3565.430 kb on - strand at 3565.432 kb on - strand at 3565.448 kb on + strand at 3565.448 kb on + strand at 3565.448 kb on + strand at 3565.456 kb on - strand at 3565.456 kb on - strand at 3565.456 kb on - strand at 3565.456 kb on - strand at 3565.537 kb on + strand at 3565.545 kb on - strand at 3565.569 kb on - strand at 3565.601 kb on - strand at 3565.620 kb on - strand at 3565.627 kb on - strand at 3565.688 kb on + strand, within CCNA_03394 at 3565.698 kb on + strand, within CCNA_03394 at 3565.706 kb on - strand, within CCNA_03394 at 3565.706 kb on - strand, within CCNA_03394 at 3565.706 kb on - strand, within CCNA_03394 at 3565.724 kb on - strand, within CCNA_03394 at 3565.735 kb on + strand, within CCNA_03394 at 3565.743 kb on - strand, within CCNA_03394 at 3565.843 kb on + strand, within CCNA_03394 at 3565.851 kb on - strand, within CCNA_03394 at 3565.907 kb on - strand, within CCNA_03394 at 3565.942 kb on + strand, within CCNA_03394 at 3565.950 kb on - strand, within CCNA_03394 at 3565.972 kb on - strand, within CCNA_03394 at 3565.992 kb on + strand, within CCNA_03394 at 3565.992 kb on + strand, within CCNA_03394 at 3565.998 kb on - strand, within CCNA_03394 at 3566.000 kb on - strand, within CCNA_03394 at 3566.000 kb on - strand, within CCNA_03394 at 3566.104 kb on + strand, within CCNA_03394 at 3566.104 kb on + strand, within CCNA_03394 at 3566.109 kb on + strand, within CCNA_03394 at 3566.109 kb on + strand, within CCNA_03394 at 3566.109 kb on + strand, within CCNA_03394 at 3566.115 kb on + strand, within CCNA_03394 at 3566.116 kb on + strand, within CCNA_03394 at 3566.116 kb on + strand, within CCNA_03394 at 3566.116 kb on + strand, within CCNA_03394 at 3566.116 kb on + strand, within CCNA_03394 at 3566.116 kb on + strand, within CCNA_03394 at 3566.117 kb on + strand, within CCNA_03394 at 3566.117 kb on - strand, within CCNA_03394 at 3566.117 kb on - strand, within CCNA_03394 at 3566.124 kb on - strand, within CCNA_03394 at 3566.124 kb on - strand, within CCNA_03394 at 3566.127 kb on + strand, within CCNA_03394 at 3566.127 kb on + strand, within CCNA_03394 at 3566.135 kb on - strand, within CCNA_03394 at 3566.155 kb on - strand, within CCNA_03394 at 3566.158 kb on - strand, within CCNA_03394 at 3566.181 kb on - strand, within CCNA_03394 at 3566.184 kb on - strand, within CCNA_03394 at 3566.184 kb on - strand, within CCNA_03394 at 3566.189 kb on + strand, within CCNA_03394 at 3566.211 kb on + strand, within CCNA_03394 at 3566.211 kb on + strand, within CCNA_03394 at 3566.219 kb on - strand at 3566.230 kb on - strand at 3566.231 kb on - strand at 3566.233 kb on + strand at 3566.255 kb on + strand at 3566.271 kb on + strand at 3566.271 kb on + strand at 3566.321 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,563,853 - -0.5 3,563,876 + CCNA_03392 0.11 -0.3 3,563,895 - CCNA_03392 0.12 -0.6 3,563,921 - CCNA_03392 0.15 +0.2 3,563,937 - CCNA_03392 0.16 +0.1 3,564,009 - CCNA_03392 0.23 -1.0 3,564,015 + CCNA_03392 0.23 -0.7 3,564,015 + CCNA_03392 0.23 -0.1 3,564,021 - CCNA_03392 0.24 -0.3 3,564,094 + CCNA_03392 0.31 -0.2 3,564,099 + CCNA_03392 0.31 -2.0 3,564,102 - CCNA_03392 0.31 +0.6 3,564,102 - CCNA_03392 0.31 -0.1 3,564,107 - CCNA_03392 0.32 -0.7 3,564,159 + CCNA_03392 0.37 -0.8 3,564,160 + CCNA_03392 0.37 -0.9 3,564,168 - CCNA_03392 0.38 -0.3 3,564,191 - CCNA_03392 0.40 -0.6 3,564,191 - CCNA_03392 0.40 +0.2 3,564,269 + CCNA_03392 0.47 -0.4 3,564,363 + CCNA_03392 0.56 +0.3 3,564,371 - CCNA_03392 0.56 +0.1 3,564,371 - CCNA_03392 0.56 -0.3 3,564,371 - CCNA_03392 0.56 -0.0 3,564,386 - CCNA_03392 0.58 -1.4 3,564,425 + CCNA_03392 0.61 +0.3 3,564,453 + CCNA_03392 0.64 +1.1 3,564,471 + CCNA_03392 0.65 -2.0 3,564,522 + CCNA_03392 0.70 -1.2 3,564,522 + CCNA_03392 0.70 -0.5 3,564,522 + CCNA_03392 0.70 -0.4 3,564,522 + CCNA_03392 0.70 -0.4 3,564,522 + CCNA_03392 0.70 -2.3 3,564,530 - CCNA_03392 0.71 -1.7 3,564,530 - CCNA_03392 0.71 -0.2 3,564,530 - CCNA_03392 0.71 -0.9 3,564,530 - CCNA_03392 0.71 -0.3 3,564,530 - CCNA_03392 0.71 -0.1 3,564,539 + CCNA_03392 0.72 -0.9 3,564,636 + CCNA_03392 0.81 +1.3 3,564,651 + CCNA_03392 0.82 +0.6 3,564,692 - CCNA_03392 0.86 -0.4 3,564,692 - CCNA_03392 0.86 -0.6 3,564,722 + CCNA_03392 0.89 -0.7 3,564,884 - -0.4 3,564,932 - CCNA_03393 0.16 +0.0 3,564,941 + CCNA_03393 0.18 -0.1 3,564,948 + CCNA_03393 0.20 +0.4 3,564,949 - CCNA_03393 0.20 -0.4 3,564,966 - CCNA_03393 0.23 -0.7 3,564,966 - CCNA_03393 0.23 -0.1 3,564,984 + CCNA_03393 0.27 -0.2 3,565,029 + CCNA_03393 0.36 -2.9 3,565,029 + CCNA_03393 0.36 -2.2 3,565,037 - CCNA_03393 0.38 -0.0 3,565,067 - CCNA_03393 0.44 -0.3 3,565,067 - CCNA_03393 0.44 +0.4 3,565,067 - CCNA_03393 0.44 -0.2 3,565,067 - CCNA_03393 0.44 -0.5 3,565,079 + CCNA_03393 0.46 -0.7 3,565,117 - CCNA_03393 0.54 -0.2 3,565,190 + CCNA_03393 0.69 -0.7 3,565,199 + CCNA_03393 0.71 -0.9 3,565,199 + CCNA_03393 0.71 -1.3 3,565,199 + CCNA_03393 0.71 -0.8 3,565,207 - CCNA_03393 0.72 -0.2 3,565,237 + CCNA_03393 0.78 -0.7 3,565,251 + CCNA_03393 0.81 -0.9 3,565,319 + +0.0 3,565,352 + -0.1 3,565,360 - +0.5 3,565,373 + -0.6 3,565,381 - -0.0 3,565,414 + +0.5 3,565,430 - -0.1 3,565,432 - +1.1 3,565,448 + -0.5 3,565,448 + -0.4 3,565,448 + -0.4 3,565,456 - -1.2 3,565,456 - +0.2 3,565,456 - +0.0 3,565,456 - +0.8 3,565,537 + +0.4 3,565,545 - -0.3 3,565,569 - -0.5 3,565,601 - +0.7 3,565,620 - +0.1 3,565,627 - -0.3 3,565,688 + CCNA_03394 0.16 +0.3 3,565,698 + CCNA_03394 0.18 -0.0 3,565,706 - CCNA_03394 0.19 -0.2 3,565,706 - CCNA_03394 0.19 -0.7 3,565,706 - CCNA_03394 0.19 -1.0 3,565,724 - CCNA_03394 0.21 +0.1 3,565,735 + CCNA_03394 0.23 -0.3 3,565,743 - CCNA_03394 0.24 +0.1 3,565,843 + CCNA_03394 0.38 -0.7 3,565,851 - CCNA_03394 0.39 -1.2 3,565,907 - CCNA_03394 0.47 -0.2 3,565,942 + CCNA_03394 0.52 -0.1 3,565,950 - CCNA_03394 0.53 +0.2 3,565,972 - CCNA_03394 0.56 +1.0 3,565,992 + CCNA_03394 0.59 +0.0 3,565,992 + CCNA_03394 0.59 +0.4 3,565,998 - CCNA_03394 0.60 -0.7 3,566,000 - CCNA_03394 0.60 +0.7 3,566,000 - CCNA_03394 0.60 -2.0 3,566,104 + CCNA_03394 0.74 -0.0 3,566,104 + CCNA_03394 0.74 +0.5 3,566,109 + CCNA_03394 0.75 +0.1 3,566,109 + CCNA_03394 0.75 -0.5 3,566,109 + CCNA_03394 0.75 -0.5 3,566,115 + CCNA_03394 0.76 -0.4 3,566,116 + CCNA_03394 0.76 -0.8 3,566,116 + CCNA_03394 0.76 +0.8 3,566,116 + CCNA_03394 0.76 +0.4 3,566,116 + CCNA_03394 0.76 -0.0 3,566,116 + CCNA_03394 0.76 +0.5 3,566,117 + CCNA_03394 0.76 -1.2 3,566,117 - CCNA_03394 0.76 -0.1 3,566,117 - CCNA_03394 0.76 +0.6 3,566,124 - CCNA_03394 0.77 +0.1 3,566,124 - CCNA_03394 0.77 +0.6 3,566,127 + CCNA_03394 0.78 +0.4 3,566,127 + CCNA_03394 0.78 +0.1 3,566,135 - CCNA_03394 0.79 +0.0 3,566,155 - CCNA_03394 0.82 -0.2 3,566,158 - CCNA_03394 0.82 +0.4 3,566,181 - CCNA_03394 0.85 -0.7 3,566,184 - CCNA_03394 0.86 -0.2 3,566,184 - CCNA_03394 0.86 +1.8 3,566,189 + CCNA_03394 0.86 -1.6 3,566,211 + CCNA_03394 0.89 +0.4 3,566,211 + CCNA_03394 0.89 +0.3 3,566,219 - -0.3 3,566,230 - -0.4 3,566,231 - -1.3 3,566,233 + +1.2 3,566,255 + -0.5 3,566,271 + +0.7 3,566,271 + -2.0 3,566,321 + -0.3
Or see this region's nucleotide sequence