Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03307 and CCNA_03308 are separated by 134 nucleotides CCNA_03308 and CCNA_03309 are separated by 48 nucleotides CCNA_03309 and CCNA_03310 are separated by 78 nucleotides CCNA_03310 and CCNA_03311 are separated by 10 nucleotides
CCNA_03307: CCNA_03307 - hypothetical protein, at 3,484,065 to 3,484,331
_03307
CCNA_03308: CCNA_03308 - hypothetical protein, at 3,484,466 to 3,485,245
_03308
CCNA_03309: CCNA_03309 - homoserine O-acetyltransferase, at 3,485,294 to 3,486,370
_03309
CCNA_03310: CCNA_03310 - transcription antitermination protein NusG, at 3,486,449 to 3,487,006
_03310
CCNA_03311: CCNA_03311 - protein translocase subunit SecE, at 3,487,017 to 3,487,334
_03311
Position (kb)
3485
3486
3487 Strain fitness (log2 ratio)
-2
-1
0
1 at 3484.338 kb on + strand at 3484.360 kb on + strand at 3484.361 kb on + strand at 3484.361 kb on + strand at 3484.369 kb on - strand at 3484.369 kb on - strand at 3484.369 kb on - strand at 3484.369 kb on - strand at 3484.374 kb on + strand at 3484.392 kb on - strand at 3484.476 kb on + strand at 3484.483 kb on + strand at 3484.544 kb on + strand, within CCNA_03308 at 3484.562 kb on + strand, within CCNA_03308 at 3484.582 kb on + strand, within CCNA_03308 at 3484.582 kb on + strand, within CCNA_03308 at 3484.583 kb on + strand, within CCNA_03308 at 3484.583 kb on + strand, within CCNA_03308 at 3484.590 kb on - strand, within CCNA_03308 at 3484.591 kb on - strand, within CCNA_03308 at 3484.609 kb on + strand, within CCNA_03308 at 3484.622 kb on - strand, within CCNA_03308 at 3484.628 kb on - strand, within CCNA_03308 at 3484.661 kb on - strand, within CCNA_03308 at 3484.690 kb on - strand, within CCNA_03308 at 3484.707 kb on + strand, within CCNA_03308 at 3484.708 kb on - strand, within CCNA_03308 at 3484.708 kb on - strand, within CCNA_03308 at 3484.713 kb on - strand, within CCNA_03308 at 3484.732 kb on + strand, within CCNA_03308 at 3484.744 kb on - strand, within CCNA_03308 at 3484.755 kb on + strand, within CCNA_03308 at 3484.830 kb on + strand, within CCNA_03308 at 3484.837 kb on + strand, within CCNA_03308 at 3484.867 kb on + strand, within CCNA_03308 at 3484.910 kb on + strand, within CCNA_03308 at 3484.910 kb on + strand, within CCNA_03308 at 3484.920 kb on + strand, within CCNA_03308 at 3484.938 kb on - strand, within CCNA_03308 at 3484.945 kb on + strand, within CCNA_03308 at 3484.945 kb on + strand, within CCNA_03308 at 3484.954 kb on - strand, within CCNA_03308 at 3484.979 kb on + strand, within CCNA_03308 at 3485.000 kb on + strand, within CCNA_03308 at 3485.001 kb on - strand, within CCNA_03308 at 3485.034 kb on + strand, within CCNA_03308 at 3485.071 kb on - strand, within CCNA_03308 at 3485.099 kb on - strand, within CCNA_03308 at 3485.101 kb on + strand, within CCNA_03308 at 3485.131 kb on - strand, within CCNA_03308 at 3485.170 kb on + strand at 3485.170 kb on + strand at 3485.178 kb on - strand at 3485.191 kb on - strand at 3485.191 kb on - strand at 3485.216 kb on - strand at 3485.258 kb on + strand at 3485.266 kb on + strand at 3485.278 kb on - strand at 3485.292 kb on - strand at 3485.315 kb on + strand at 3485.315 kb on + strand at 3485.358 kb on - strand at 3485.358 kb on - strand at 3485.390 kb on - strand at 3485.409 kb on - strand, within CCNA_03309 at 3485.452 kb on + strand, within CCNA_03309 at 3485.459 kb on - strand, within CCNA_03309 at 3485.540 kb on + strand, within CCNA_03309 at 3485.548 kb on - strand, within CCNA_03309 at 3485.561 kb on + strand, within CCNA_03309 at 3485.576 kb on - strand, within CCNA_03309 at 3485.578 kb on + strand, within CCNA_03309 at 3485.591 kb on - strand, within CCNA_03309 at 3485.605 kb on + strand, within CCNA_03309 at 3485.613 kb on - strand, within CCNA_03309 at 3485.613 kb on - strand, within CCNA_03309 at 3485.613 kb on - strand, within CCNA_03309 at 3485.652 kb on + strand, within CCNA_03309 at 3485.672 kb on - strand, within CCNA_03309 at 3485.682 kb on - strand, within CCNA_03309 at 3485.696 kb on + strand, within CCNA_03309 at 3485.715 kb on + strand, within CCNA_03309 at 3485.743 kb on - strand, within CCNA_03309 at 3485.755 kb on - strand, within CCNA_03309 at 3485.810 kb on + strand, within CCNA_03309 at 3485.818 kb on - strand, within CCNA_03309 at 3485.818 kb on - strand, within CCNA_03309 at 3485.818 kb on - strand, within CCNA_03309 at 3485.823 kb on - strand, within CCNA_03309 at 3485.823 kb on - strand, within CCNA_03309 at 3485.838 kb on + strand, within CCNA_03309 at 3485.838 kb on + strand, within CCNA_03309 at 3485.924 kb on + strand, within CCNA_03309 at 3485.938 kb on - strand, within CCNA_03309 at 3485.944 kb on + strand, within CCNA_03309 at 3485.949 kb on + strand, within CCNA_03309 at 3485.957 kb on - strand, within CCNA_03309 at 3485.957 kb on - strand, within CCNA_03309 at 3485.959 kb on + strand, within CCNA_03309 at 3485.959 kb on + strand, within CCNA_03309 at 3485.959 kb on + strand, within CCNA_03309 at 3485.959 kb on + strand, within CCNA_03309 at 3485.962 kb on - strand, within CCNA_03309 at 3485.962 kb on - strand, within CCNA_03309 at 3485.967 kb on - strand, within CCNA_03309 at 3485.967 kb on - strand, within CCNA_03309 at 3485.967 kb on - strand, within CCNA_03309 at 3485.967 kb on - strand, within CCNA_03309 at 3485.967 kb on - strand, within CCNA_03309 at 3485.972 kb on + strand, within CCNA_03309 at 3485.998 kb on - strand, within CCNA_03309 at 3486.070 kb on - strand, within CCNA_03309 at 3486.070 kb on - strand, within CCNA_03309 at 3486.096 kb on - strand, within CCNA_03309 at 3486.118 kb on + strand, within CCNA_03309 at 3486.118 kb on + strand, within CCNA_03309 at 3486.126 kb on - strand, within CCNA_03309 at 3486.247 kb on + strand, within CCNA_03309 at 3486.253 kb on + strand, within CCNA_03309 at 3486.254 kb on + strand, within CCNA_03309 at 3486.258 kb on + strand, within CCNA_03309 at 3486.390 kb on + strand at 3486.436 kb on + strand at 3486.444 kb on - strand at 3486.444 kb on - strand at 3486.444 kb on - strand at 3486.444 kb on - strand at 3486.473 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,484,338 + -0.0 3,484,360 + +0.3 3,484,361 + -0.2 3,484,361 + -0.4 3,484,369 - +1.7 3,484,369 - +0.7 3,484,369 - -0.9 3,484,369 - +0.6 3,484,374 + -0.6 3,484,392 - -0.2 3,484,476 + -0.3 3,484,483 + -0.3 3,484,544 + CCNA_03308 0.10 +0.1 3,484,562 + CCNA_03308 0.12 -0.2 3,484,582 + CCNA_03308 0.15 -1.0 3,484,582 + CCNA_03308 0.15 +0.5 3,484,583 + CCNA_03308 0.15 -0.1 3,484,583 + CCNA_03308 0.15 -0.4 3,484,590 - CCNA_03308 0.16 +0.1 3,484,591 - CCNA_03308 0.16 -0.6 3,484,609 + CCNA_03308 0.18 +0.0 3,484,622 - CCNA_03308 0.20 +0.1 3,484,628 - CCNA_03308 0.21 -2.2 3,484,661 - CCNA_03308 0.25 -0.6 3,484,690 - CCNA_03308 0.29 -0.6 3,484,707 + CCNA_03308 0.31 +0.2 3,484,708 - CCNA_03308 0.31 +0.6 3,484,708 - CCNA_03308 0.31 -0.4 3,484,713 - CCNA_03308 0.32 +0.3 3,484,732 + CCNA_03308 0.34 +0.3 3,484,744 - CCNA_03308 0.36 -0.0 3,484,755 + CCNA_03308 0.37 -0.9 3,484,830 + CCNA_03308 0.47 -0.6 3,484,837 + CCNA_03308 0.48 +0.4 3,484,867 + CCNA_03308 0.51 +0.3 3,484,910 + CCNA_03308 0.57 +0.9 3,484,910 + CCNA_03308 0.57 -1.8 3,484,920 + CCNA_03308 0.58 -0.3 3,484,938 - CCNA_03308 0.61 -1.4 3,484,945 + CCNA_03308 0.61 -0.1 3,484,945 + CCNA_03308 0.61 -1.1 3,484,954 - CCNA_03308 0.63 -0.3 3,484,979 + CCNA_03308 0.66 +0.0 3,485,000 + CCNA_03308 0.68 +0.1 3,485,001 - CCNA_03308 0.69 +0.0 3,485,034 + CCNA_03308 0.73 -0.9 3,485,071 - CCNA_03308 0.78 -0.3 3,485,099 - CCNA_03308 0.81 -0.5 3,485,101 + CCNA_03308 0.81 +0.2 3,485,131 - CCNA_03308 0.85 -0.8 3,485,170 + -0.5 3,485,170 + +0.7 3,485,178 - -0.6 3,485,191 - -0.1 3,485,191 - +0.0 3,485,216 - +0.6 3,485,258 + -1.6 3,485,266 + +0.5 3,485,278 - -0.3 3,485,292 - +0.4 3,485,315 + +1.3 3,485,315 + +0.9 3,485,358 - -0.3 3,485,358 - +1.0 3,485,390 - -0.3 3,485,409 - CCNA_03309 0.11 +0.3 3,485,452 + CCNA_03309 0.15 +0.6 3,485,459 - CCNA_03309 0.15 -1.0 3,485,540 + CCNA_03309 0.23 -0.1 3,485,548 - CCNA_03309 0.24 -0.2 3,485,561 + CCNA_03309 0.25 +0.3 3,485,576 - CCNA_03309 0.26 +0.1 3,485,578 + CCNA_03309 0.26 +1.2 3,485,591 - CCNA_03309 0.28 +0.1 3,485,605 + CCNA_03309 0.29 -0.0 3,485,613 - CCNA_03309 0.30 -0.7 3,485,613 - CCNA_03309 0.30 -1.0 3,485,613 - CCNA_03309 0.30 -0.2 3,485,652 + CCNA_03309 0.33 +0.7 3,485,672 - CCNA_03309 0.35 +0.4 3,485,682 - CCNA_03309 0.36 +1.0 3,485,696 + CCNA_03309 0.37 -0.2 3,485,715 + CCNA_03309 0.39 +1.4 3,485,743 - CCNA_03309 0.42 -1.1 3,485,755 - CCNA_03309 0.43 +0.3 3,485,810 + CCNA_03309 0.48 +0.4 3,485,818 - CCNA_03309 0.49 -0.7 3,485,818 - CCNA_03309 0.49 -1.3 3,485,818 - CCNA_03309 0.49 -0.1 3,485,823 - CCNA_03309 0.49 -0.3 3,485,823 - CCNA_03309 0.49 -0.2 3,485,838 + CCNA_03309 0.51 +0.2 3,485,838 + CCNA_03309 0.51 +0.1 3,485,924 + CCNA_03309 0.58 -0.4 3,485,938 - CCNA_03309 0.60 +0.1 3,485,944 + CCNA_03309 0.60 +0.3 3,485,949 + CCNA_03309 0.61 -0.6 3,485,957 - CCNA_03309 0.62 -0.5 3,485,957 - CCNA_03309 0.62 +0.1 3,485,959 + CCNA_03309 0.62 -0.7 3,485,959 + CCNA_03309 0.62 -0.1 3,485,959 + CCNA_03309 0.62 -0.0 3,485,959 + CCNA_03309 0.62 -0.1 3,485,962 - CCNA_03309 0.62 -0.1 3,485,962 - CCNA_03309 0.62 -0.2 3,485,967 - CCNA_03309 0.62 -2.1 3,485,967 - CCNA_03309 0.62 -0.7 3,485,967 - CCNA_03309 0.62 -2.0 3,485,967 - CCNA_03309 0.62 +0.2 3,485,967 - CCNA_03309 0.62 -1.5 3,485,972 + CCNA_03309 0.63 -0.5 3,485,998 - CCNA_03309 0.65 +0.7 3,486,070 - CCNA_03309 0.72 -1.0 3,486,070 - CCNA_03309 0.72 -1.9 3,486,096 - CCNA_03309 0.74 +0.3 3,486,118 + CCNA_03309 0.77 +0.0 3,486,118 + CCNA_03309 0.77 +0.7 3,486,126 - CCNA_03309 0.77 -0.4 3,486,247 + CCNA_03309 0.88 +0.2 3,486,253 + CCNA_03309 0.89 -1.1 3,486,254 + CCNA_03309 0.89 +0.8 3,486,258 + CCNA_03309 0.90 -0.0 3,486,390 + +0.7 3,486,436 + +0.6 3,486,444 - -0.1 3,486,444 - +0.2 3,486,444 - -0.1 3,486,444 - -0.4 3,486,473 - -0.0
Or see this region's nucleotide sequence