Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02938 and CCNA_02939 are separated by 156 nucleotides CCNA_02939 and CCNA_02940 overlap by 4 nucleotides CCNA_02940 and CCNA_02941 are separated by 154 nucleotides CCNA_02941 and CCNA_02942 are separated by 113 nucleotides
CCNA_02938: CCNA_02938 - outer membrane protein A, at 3,098,699 to 3,099,274
_02938
CCNA_02939: CCNA_02939 - hypothetical protein, at 3,099,431 to 3,099,787
_02939
CCNA_02940: CCNA_02940 - methyl-accepting chemotaxis protein, at 3,099,784 to 3,101,388
_02940
CCNA_02941: CCNA_02941 - transcription elongation factor greA, at 3,101,543 to 3,102,016
_02941
CCNA_02942: CCNA_02942 - nucleoside-diphosphate-sugar epimerase, at 3,102,130 to 3,103,299
_02942
Position (kb)
3099
3100
3101
3102 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3098.794 kb on + strand, within CCNA_02938 at 3098.825 kb on - strand, within CCNA_02938 at 3098.863 kb on + strand, within CCNA_02938 at 3098.877 kb on - strand, within CCNA_02938 at 3098.887 kb on + strand, within CCNA_02938 at 3098.935 kb on - strand, within CCNA_02938 at 3098.942 kb on - strand, within CCNA_02938 at 3098.942 kb on - strand, within CCNA_02938 at 3098.949 kb on + strand, within CCNA_02938 at 3098.994 kb on - strand, within CCNA_02938 at 3099.031 kb on - strand, within CCNA_02938 at 3099.059 kb on + strand, within CCNA_02938 at 3099.060 kb on - strand, within CCNA_02938 at 3099.143 kb on - strand, within CCNA_02938 at 3099.145 kb on + strand, within CCNA_02938 at 3099.145 kb on + strand, within CCNA_02938 at 3099.164 kb on + strand, within CCNA_02938 at 3099.172 kb on - strand, within CCNA_02938 at 3099.269 kb on - strand at 3099.275 kb on + strand at 3099.277 kb on + strand at 3099.285 kb on - strand at 3099.285 kb on - strand at 3099.295 kb on + strand at 3099.309 kb on + strand at 3099.310 kb on + strand at 3099.311 kb on + strand at 3099.319 kb on - strand at 3099.319 kb on - strand at 3099.319 kb on - strand at 3099.363 kb on - strand at 3099.379 kb on + strand at 3099.410 kb on + strand at 3099.433 kb on - strand at 3099.450 kb on - strand at 3099.501 kb on + strand, within CCNA_02939 at 3099.503 kb on - strand, within CCNA_02939 at 3099.514 kb on - strand, within CCNA_02939 at 3099.583 kb on - strand, within CCNA_02939 at 3099.593 kb on - strand, within CCNA_02939 at 3099.602 kb on - strand, within CCNA_02939 at 3099.668 kb on - strand, within CCNA_02939 at 3099.691 kb on + strand, within CCNA_02939 at 3099.695 kb on - strand, within CCNA_02939 at 3099.699 kb on - strand, within CCNA_02939 at 3099.699 kb on - strand, within CCNA_02939 at 3099.708 kb on + strand, within CCNA_02939 at 3099.740 kb on - strand, within CCNA_02939 at 3099.781 kb on + strand at 3099.797 kb on + strand at 3099.798 kb on + strand at 3099.835 kb on - strand at 3099.913 kb on - strand at 3099.923 kb on + strand at 3099.928 kb on + strand at 3099.936 kb on - strand at 3099.936 kb on - strand at 3099.936 kb on - strand at 3099.942 kb on - strand at 3099.951 kb on - strand, within CCNA_02940 at 3099.996 kb on + strand, within CCNA_02940 at 3100.020 kb on + strand, within CCNA_02940 at 3100.028 kb on - strand, within CCNA_02940 at 3100.039 kb on + strand, within CCNA_02940 at 3100.047 kb on - strand, within CCNA_02940 at 3100.090 kb on + strand, within CCNA_02940 at 3100.098 kb on - strand, within CCNA_02940 at 3100.134 kb on - strand, within CCNA_02940 at 3100.163 kb on + strand, within CCNA_02940 at 3100.163 kb on + strand, within CCNA_02940 at 3100.163 kb on + strand, within CCNA_02940 at 3100.163 kb on + strand, within CCNA_02940 at 3100.163 kb on + strand, within CCNA_02940 at 3100.163 kb on + strand, within CCNA_02940 at 3100.168 kb on + strand, within CCNA_02940 at 3100.168 kb on + strand, within CCNA_02940 at 3100.168 kb on + strand, within CCNA_02940 at 3100.168 kb on + strand, within CCNA_02940 at 3100.171 kb on - strand, within CCNA_02940 at 3100.171 kb on - strand, within CCNA_02940 at 3100.171 kb on - strand, within CCNA_02940 at 3100.173 kb on + strand, within CCNA_02940 at 3100.173 kb on + strand, within CCNA_02940 at 3100.173 kb on + strand, within CCNA_02940 at 3100.173 kb on + strand, within CCNA_02940 at 3100.173 kb on + strand, within CCNA_02940 at 3100.176 kb on - strand, within CCNA_02940 at 3100.176 kb on - strand, within CCNA_02940 at 3100.181 kb on - strand, within CCNA_02940 at 3100.181 kb on - strand, within CCNA_02940 at 3100.316 kb on - strand, within CCNA_02940 at 3100.323 kb on + strand, within CCNA_02940 at 3100.331 kb on - strand, within CCNA_02940 at 3100.331 kb on - strand, within CCNA_02940 at 3100.331 kb on - strand, within CCNA_02940 at 3100.331 kb on - strand, within CCNA_02940 at 3100.331 kb on - strand, within CCNA_02940 at 3100.331 kb on - strand, within CCNA_02940 at 3100.331 kb on - strand, within CCNA_02940 at 3100.331 kb on - strand, within CCNA_02940 at 3100.345 kb on + strand, within CCNA_02940 at 3100.474 kb on - strand, within CCNA_02940 at 3100.502 kb on + strand, within CCNA_02940 at 3100.502 kb on + strand, within CCNA_02940 at 3100.502 kb on + strand, within CCNA_02940 at 3100.509 kb on - strand, within CCNA_02940 at 3100.537 kb on + strand, within CCNA_02940 at 3100.544 kb on - strand, within CCNA_02940 at 3100.546 kb on - strand, within CCNA_02940 at 3100.546 kb on - strand, within CCNA_02940 at 3100.558 kb on + strand, within CCNA_02940 at 3100.560 kb on + strand, within CCNA_02940 at 3100.560 kb on + strand, within CCNA_02940 at 3100.560 kb on + strand, within CCNA_02940 at 3100.566 kb on - strand, within CCNA_02940 at 3100.614 kb on + strand, within CCNA_02940 at 3100.622 kb on - strand, within CCNA_02940 at 3100.642 kb on - strand, within CCNA_02940 at 3100.647 kb on - strand, within CCNA_02940 at 3100.691 kb on + strand, within CCNA_02940 at 3100.697 kb on + strand, within CCNA_02940 at 3100.697 kb on + strand, within CCNA_02940 at 3100.697 kb on + strand, within CCNA_02940 at 3100.701 kb on + strand, within CCNA_02940 at 3100.705 kb on - strand, within CCNA_02940 at 3100.851 kb on - strand, within CCNA_02940 at 3100.873 kb on - strand, within CCNA_02940 at 3100.924 kb on - strand, within CCNA_02940 at 3101.008 kb on + strand, within CCNA_02940 at 3101.009 kb on - strand, within CCNA_02940 at 3101.045 kb on + strand, within CCNA_02940 at 3101.068 kb on + strand, within CCNA_02940 at 3101.085 kb on - strand, within CCNA_02940 at 3101.089 kb on - strand, within CCNA_02940 at 3101.117 kb on + strand, within CCNA_02940 at 3101.155 kb on + strand, within CCNA_02940 at 3101.193 kb on + strand, within CCNA_02940 at 3101.193 kb on + strand, within CCNA_02940 at 3101.206 kb on + strand, within CCNA_02940 at 3101.214 kb on + strand, within CCNA_02940 at 3101.219 kb on - strand, within CCNA_02940 at 3101.231 kb on + strand at 3101.255 kb on + strand at 3101.266 kb on + strand at 3101.274 kb on - strand at 3101.274 kb on - strand at 3101.295 kb on - strand at 3101.317 kb on - strand at 3101.365 kb on - strand at 3101.383 kb on + strand at 3101.400 kb on + strand at 3101.427 kb on + strand at 3101.434 kb on - strand at 3101.761 kb on + strand, within CCNA_02941 at 3101.779 kb on + strand, within CCNA_02941 at 3102.059 kb on + strand at 3102.297 kb on - strand, within CCNA_02942 at 3102.301 kb on + strand, within CCNA_02942 at 3102.306 kb on + strand, within CCNA_02942 at 3102.358 kb on + strand, within CCNA_02942 at 3102.386 kb on + strand, within CCNA_02942
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,098,794 + CCNA_02938 0.16 +0.0 3,098,825 - CCNA_02938 0.22 -0.7 3,098,863 + CCNA_02938 0.28 -0.5 3,098,877 - CCNA_02938 0.31 -0.1 3,098,887 + CCNA_02938 0.33 -0.4 3,098,935 - CCNA_02938 0.41 -1.4 3,098,942 - CCNA_02938 0.42 +1.0 3,098,942 - CCNA_02938 0.42 -0.3 3,098,949 + CCNA_02938 0.43 +0.6 3,098,994 - CCNA_02938 0.51 -0.1 3,099,031 - CCNA_02938 0.58 +1.3 3,099,059 + CCNA_02938 0.62 -0.6 3,099,060 - CCNA_02938 0.63 -1.0 3,099,143 - CCNA_02938 0.77 +0.4 3,099,145 + CCNA_02938 0.77 -0.5 3,099,145 + CCNA_02938 0.77 +1.0 3,099,164 + CCNA_02938 0.81 -0.2 3,099,172 - CCNA_02938 0.82 +0.3 3,099,269 - -1.7 3,099,275 + +0.2 3,099,277 + +1.4 3,099,285 - -0.8 3,099,285 - -1.1 3,099,295 + +0.9 3,099,309 + -1.8 3,099,310 + -0.2 3,099,311 + -1.1 3,099,319 - +1.5 3,099,319 - -0.8 3,099,319 - +0.2 3,099,363 - +0.1 3,099,379 + -1.2 3,099,410 + +0.7 3,099,433 - +0.1 3,099,450 - +0.4 3,099,501 + CCNA_02939 0.20 +0.5 3,099,503 - CCNA_02939 0.20 +0.4 3,099,514 - CCNA_02939 0.23 -1.0 3,099,583 - CCNA_02939 0.43 +1.1 3,099,593 - CCNA_02939 0.45 +0.0 3,099,602 - CCNA_02939 0.48 -1.5 3,099,668 - CCNA_02939 0.66 +0.3 3,099,691 + CCNA_02939 0.73 -0.2 3,099,695 - CCNA_02939 0.74 -0.6 3,099,699 - CCNA_02939 0.75 -0.4 3,099,699 - CCNA_02939 0.75 -0.8 3,099,708 + CCNA_02939 0.78 -1.5 3,099,740 - CCNA_02939 0.87 -1.7 3,099,781 + -0.5 3,099,797 + +0.8 3,099,798 + +0.4 3,099,835 - -0.4 3,099,913 - -0.0 3,099,923 + -0.8 3,099,928 + +0.5 3,099,936 - -0.4 3,099,936 - +0.7 3,099,936 - +0.1 3,099,942 - +1.0 3,099,951 - CCNA_02940 0.10 +0.0 3,099,996 + CCNA_02940 0.13 -0.1 3,100,020 + CCNA_02940 0.15 +0.4 3,100,028 - CCNA_02940 0.15 +0.5 3,100,039 + CCNA_02940 0.16 -0.4 3,100,047 - CCNA_02940 0.16 -1.2 3,100,090 + CCNA_02940 0.19 -0.2 3,100,098 - CCNA_02940 0.20 +1.4 3,100,134 - CCNA_02940 0.22 -0.6 3,100,163 + CCNA_02940 0.24 -0.1 3,100,163 + CCNA_02940 0.24 -0.5 3,100,163 + CCNA_02940 0.24 -0.6 3,100,163 + CCNA_02940 0.24 +0.2 3,100,163 + CCNA_02940 0.24 -0.7 3,100,163 + CCNA_02940 0.24 -0.5 3,100,168 + CCNA_02940 0.24 -0.0 3,100,168 + CCNA_02940 0.24 -0.6 3,100,168 + CCNA_02940 0.24 -0.1 3,100,168 + CCNA_02940 0.24 +0.4 3,100,171 - CCNA_02940 0.24 -0.0 3,100,171 - CCNA_02940 0.24 +0.0 3,100,171 - CCNA_02940 0.24 +0.7 3,100,173 + CCNA_02940 0.24 +0.1 3,100,173 + CCNA_02940 0.24 +0.4 3,100,173 + CCNA_02940 0.24 -0.3 3,100,173 + CCNA_02940 0.24 -0.8 3,100,173 + CCNA_02940 0.24 -0.9 3,100,176 - CCNA_02940 0.24 -0.6 3,100,176 - CCNA_02940 0.24 -0.5 3,100,181 - CCNA_02940 0.25 -0.8 3,100,181 - CCNA_02940 0.25 +0.5 3,100,316 - CCNA_02940 0.33 -2.0 3,100,323 + CCNA_02940 0.34 -0.3 3,100,331 - CCNA_02940 0.34 -0.1 3,100,331 - CCNA_02940 0.34 +1.5 3,100,331 - CCNA_02940 0.34 +0.4 3,100,331 - CCNA_02940 0.34 +0.7 3,100,331 - CCNA_02940 0.34 -1.4 3,100,331 - CCNA_02940 0.34 -0.5 3,100,331 - CCNA_02940 0.34 -0.3 3,100,331 - CCNA_02940 0.34 -0.1 3,100,345 + CCNA_02940 0.35 -0.1 3,100,474 - CCNA_02940 0.43 +0.1 3,100,502 + CCNA_02940 0.45 -0.5 3,100,502 + CCNA_02940 0.45 +0.1 3,100,502 + CCNA_02940 0.45 -0.1 3,100,509 - CCNA_02940 0.45 -0.3 3,100,537 + CCNA_02940 0.47 -0.6 3,100,544 - CCNA_02940 0.47 -0.6 3,100,546 - CCNA_02940 0.47 -0.5 3,100,546 - CCNA_02940 0.47 +0.8 3,100,558 + CCNA_02940 0.48 -0.1 3,100,560 + CCNA_02940 0.48 -0.3 3,100,560 + CCNA_02940 0.48 -0.5 3,100,560 + CCNA_02940 0.48 +0.8 3,100,566 - CCNA_02940 0.49 +0.2 3,100,614 + CCNA_02940 0.52 -1.1 3,100,622 - CCNA_02940 0.52 -0.3 3,100,642 - CCNA_02940 0.53 -0.2 3,100,647 - CCNA_02940 0.54 +0.1 3,100,691 + CCNA_02940 0.57 -0.3 3,100,697 + CCNA_02940 0.57 -0.0 3,100,697 + CCNA_02940 0.57 -0.4 3,100,697 + CCNA_02940 0.57 -0.3 3,100,701 + CCNA_02940 0.57 +0.6 3,100,705 - CCNA_02940 0.57 +1.2 3,100,851 - CCNA_02940 0.66 +2.3 3,100,873 - CCNA_02940 0.68 +0.3 3,100,924 - CCNA_02940 0.71 -0.3 3,101,008 + CCNA_02940 0.76 +1.5 3,101,009 - CCNA_02940 0.76 -0.0 3,101,045 + CCNA_02940 0.79 +0.0 3,101,068 + CCNA_02940 0.80 -0.2 3,101,085 - CCNA_02940 0.81 +0.1 3,101,089 - CCNA_02940 0.81 +0.6 3,101,117 + CCNA_02940 0.83 -0.3 3,101,155 + CCNA_02940 0.85 +0.3 3,101,193 + CCNA_02940 0.88 +0.8 3,101,193 + CCNA_02940 0.88 +0.4 3,101,206 + CCNA_02940 0.89 -0.1 3,101,214 + CCNA_02940 0.89 +0.2 3,101,219 - CCNA_02940 0.89 +0.1 3,101,231 + -1.1 3,101,255 + -1.1 3,101,266 + -0.1 3,101,274 - +0.8 3,101,274 - +0.2 3,101,295 - +0.5 3,101,317 - -0.7 3,101,365 - +0.5 3,101,383 + -0.3 3,101,400 + -1.6 3,101,427 + +0.0 3,101,434 - +0.6 3,101,761 + CCNA_02941 0.46 -0.1 3,101,779 + CCNA_02941 0.50 -0.7 3,102,059 + -0.0 3,102,297 - CCNA_02942 0.14 -0.9 3,102,301 + CCNA_02942 0.15 -0.5 3,102,306 + CCNA_02942 0.15 +0.4 3,102,358 + CCNA_02942 0.19 -0.1 3,102,386 + CCNA_02942 0.22 +0.4
Or see this region's nucleotide sequence