Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02834 and CCNA_02835 are separated by 48 nucleotides CCNA_02835 and CCNA_02836 overlap by 4 nucleotides CCNA_02836 and CCNA_02837 are separated by 16 nucleotides
CCNA_02834: CCNA_02834 - molybdopterin dependent oxidoreductase, at 2,987,948 to 2,988,889
_02834
CCNA_02835: CCNA_02835 - CpxP-related protein, at 2,988,938 to 2,989,567
_02835
CCNA_02836: CCNA_02836 - hypothetical protein, at 2,989,564 to 2,990,016
_02836
CCNA_02837: CCNA_02837 - RNA polymerase ECF-type sigma factor, at 2,990,033 to 2,990,593
_02837
Position (kb)
2988
2989
2990 Strain fitness (log2 ratio)
-2
-1
0
1 at 2987.998 kb on + strand at 2988.014 kb on + strand at 2988.052 kb on + strand, within CCNA_02834 at 2988.079 kb on + strand, within CCNA_02834 at 2988.105 kb on - strand, within CCNA_02834 at 2988.124 kb on + strand, within CCNA_02834 at 2988.160 kb on + strand, within CCNA_02834 at 2988.168 kb on - strand, within CCNA_02834 at 2988.168 kb on - strand, within CCNA_02834 at 2988.184 kb on + strand, within CCNA_02834 at 2988.206 kb on + strand, within CCNA_02834 at 2988.206 kb on - strand, within CCNA_02834 at 2988.219 kb on + strand, within CCNA_02834 at 2988.219 kb on + strand, within CCNA_02834 at 2988.234 kb on + strand, within CCNA_02834 at 2988.256 kb on - strand, within CCNA_02834 at 2988.257 kb on - strand, within CCNA_02834 at 2988.283 kb on + strand, within CCNA_02834 at 2988.311 kb on + strand, within CCNA_02834 at 2988.324 kb on - strand, within CCNA_02834 at 2988.335 kb on + strand, within CCNA_02834 at 2988.338 kb on - strand, within CCNA_02834 at 2988.338 kb on - strand, within CCNA_02834 at 2988.338 kb on - strand, within CCNA_02834 at 2988.343 kb on - strand, within CCNA_02834 at 2988.350 kb on + strand, within CCNA_02834 at 2988.351 kb on + strand, within CCNA_02834 at 2988.376 kb on + strand, within CCNA_02834 at 2988.399 kb on + strand, within CCNA_02834 at 2988.418 kb on + strand, within CCNA_02834 at 2988.428 kb on + strand, within CCNA_02834 at 2988.428 kb on + strand, within CCNA_02834 at 2988.436 kb on - strand, within CCNA_02834 at 2988.474 kb on + strand, within CCNA_02834 at 2988.479 kb on + strand, within CCNA_02834 at 2988.479 kb on + strand, within CCNA_02834 at 2988.479 kb on + strand, within CCNA_02834 at 2988.487 kb on - strand, within CCNA_02834 at 2988.511 kb on + strand, within CCNA_02834 at 2988.550 kb on - strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.609 kb on - strand, within CCNA_02834 at 2988.609 kb on - strand, within CCNA_02834 at 2988.662 kb on + strand, within CCNA_02834 at 2988.690 kb on - strand, within CCNA_02834 at 2988.718 kb on + strand, within CCNA_02834 at 2988.767 kb on + strand, within CCNA_02834 at 2988.844 kb on + strand at 2988.844 kb on + strand at 2988.844 kb on + strand at 2988.844 kb on + strand at 2988.852 kb on - strand at 2988.852 kb on - strand at 2988.852 kb on - strand at 2988.852 kb on - strand at 2988.852 kb on - strand at 2988.852 kb on - strand at 2988.852 kb on - strand at 2988.852 kb on - strand at 2988.894 kb on - strand at 2988.995 kb on - strand at 2989.000 kb on - strand at 2989.005 kb on - strand, within CCNA_02835 at 2989.055 kb on - strand, within CCNA_02835 at 2989.228 kb on - strand, within CCNA_02835 at 2989.228 kb on - strand, within CCNA_02835 at 2989.305 kb on - strand, within CCNA_02835 at 2989.434 kb on - strand, within CCNA_02835 at 2989.472 kb on - strand, within CCNA_02835 at 2989.587 kb on - strand at 2989.589 kb on - strand at 2989.589 kb on - strand at 2989.636 kb on - strand, within CCNA_02836 at 2989.780 kb on + strand, within CCNA_02836 at 2989.780 kb on + strand, within CCNA_02836 at 2989.930 kb on - strand, within CCNA_02836 at 2990.048 kb on + strand at 2990.056 kb on - strand at 2990.100 kb on - strand, within CCNA_02837 at 2990.110 kb on - strand, within CCNA_02837 at 2990.169 kb on - strand, within CCNA_02837 at 2990.217 kb on + strand, within CCNA_02837 at 2990.236 kb on + strand, within CCNA_02837 at 2990.244 kb on - strand, within CCNA_02837 at 2990.284 kb on + strand, within CCNA_02837 at 2990.300 kb on + strand, within CCNA_02837 at 2990.357 kb on + strand, within CCNA_02837 at 2990.407 kb on + strand, within CCNA_02837 at 2990.415 kb on - strand, within CCNA_02837 at 2990.429 kb on + strand, within CCNA_02837 at 2990.429 kb on + strand, within CCNA_02837 at 2990.430 kb on - strand, within CCNA_02837 at 2990.507 kb on + strand, within CCNA_02837 at 2990.515 kb on - strand, within CCNA_02837 at 2990.515 kb on - strand, within CCNA_02837 at 2990.515 kb on - strand, within CCNA_02837 at 2990.519 kb on - strand, within CCNA_02837 at 2990.541 kb on + strand at 2990.545 kb on - strand at 2990.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,987,998 + -0.2 2,988,014 + -0.3 2,988,052 + CCNA_02834 0.11 -0.3 2,988,079 + CCNA_02834 0.14 -0.8 2,988,105 - CCNA_02834 0.17 -0.3 2,988,124 + CCNA_02834 0.19 -2.0 2,988,160 + CCNA_02834 0.23 -0.2 2,988,168 - CCNA_02834 0.23 -0.2 2,988,168 - CCNA_02834 0.23 +0.0 2,988,184 + CCNA_02834 0.25 -2.4 2,988,206 + CCNA_02834 0.27 -0.3 2,988,206 - CCNA_02834 0.27 -0.8 2,988,219 + CCNA_02834 0.29 +0.2 2,988,219 + CCNA_02834 0.29 +0.2 2,988,234 + CCNA_02834 0.30 -0.7 2,988,256 - CCNA_02834 0.33 +1.7 2,988,257 - CCNA_02834 0.33 +0.0 2,988,283 + CCNA_02834 0.36 -0.3 2,988,311 + CCNA_02834 0.39 -0.5 2,988,324 - CCNA_02834 0.40 +0.7 2,988,335 + CCNA_02834 0.41 +0.3 2,988,338 - CCNA_02834 0.41 +0.2 2,988,338 - CCNA_02834 0.41 +0.4 2,988,338 - CCNA_02834 0.41 +1.4 2,988,343 - CCNA_02834 0.42 +0.7 2,988,350 + CCNA_02834 0.43 -1.0 2,988,351 + CCNA_02834 0.43 -0.5 2,988,376 + CCNA_02834 0.45 +1.6 2,988,399 + CCNA_02834 0.48 +0.2 2,988,418 + CCNA_02834 0.50 +0.0 2,988,428 + CCNA_02834 0.51 +0.9 2,988,428 + CCNA_02834 0.51 +0.6 2,988,436 - CCNA_02834 0.52 +0.2 2,988,474 + CCNA_02834 0.56 +0.6 2,988,479 + CCNA_02834 0.56 +0.4 2,988,479 + CCNA_02834 0.56 -1.0 2,988,479 + CCNA_02834 0.56 -0.8 2,988,487 - CCNA_02834 0.57 -0.5 2,988,511 + CCNA_02834 0.60 +0.7 2,988,550 - CCNA_02834 0.64 +0.1 2,988,588 + CCNA_02834 0.68 +0.2 2,988,588 + CCNA_02834 0.68 -0.2 2,988,588 + CCNA_02834 0.68 -0.7 2,988,588 + CCNA_02834 0.68 -0.3 2,988,588 + CCNA_02834 0.68 -1.1 2,988,588 + CCNA_02834 0.68 +1.7 2,988,588 + CCNA_02834 0.68 +0.2 2,988,588 + CCNA_02834 0.68 -0.7 2,988,596 - CCNA_02834 0.69 -1.6 2,988,596 - CCNA_02834 0.69 +0.2 2,988,596 - CCNA_02834 0.69 +1.7 2,988,596 - CCNA_02834 0.69 -0.2 2,988,596 - CCNA_02834 0.69 -0.2 2,988,596 - CCNA_02834 0.69 +0.3 2,988,596 - CCNA_02834 0.69 -0.3 2,988,596 - CCNA_02834 0.69 -0.3 2,988,596 - CCNA_02834 0.69 +1.3 2,988,596 - CCNA_02834 0.69 +0.1 2,988,609 - CCNA_02834 0.70 -0.4 2,988,609 - CCNA_02834 0.70 +0.0 2,988,662 + CCNA_02834 0.76 -0.5 2,988,690 - CCNA_02834 0.79 +0.9 2,988,718 + CCNA_02834 0.82 -0.5 2,988,767 + CCNA_02834 0.87 -1.3 2,988,844 + -0.5 2,988,844 + +0.4 2,988,844 + +0.4 2,988,844 + -0.9 2,988,852 - -1.2 2,988,852 - +1.1 2,988,852 - +0.1 2,988,852 - +0.3 2,988,852 - -0.2 2,988,852 - +0.2 2,988,852 - +0.5 2,988,852 - +0.1 2,988,894 - -0.8 2,988,995 - +1.0 2,989,000 - -0.4 2,989,005 - CCNA_02835 0.11 -0.1 2,989,055 - CCNA_02835 0.19 -0.0 2,989,228 - CCNA_02835 0.46 +1.1 2,989,228 - CCNA_02835 0.46 -1.0 2,989,305 - CCNA_02835 0.58 -0.9 2,989,434 - CCNA_02835 0.79 -0.1 2,989,472 - CCNA_02835 0.85 -2.3 2,989,587 - -0.8 2,989,589 - +0.4 2,989,589 - -0.3 2,989,636 - CCNA_02836 0.16 +0.2 2,989,780 + CCNA_02836 0.48 -0.6 2,989,780 + CCNA_02836 0.48 -0.9 2,989,930 - CCNA_02836 0.81 +0.2 2,990,048 + +1.3 2,990,056 - +0.4 2,990,100 - CCNA_02837 0.12 +0.6 2,990,110 - CCNA_02837 0.14 +0.2 2,990,169 - CCNA_02837 0.24 +1.1 2,990,217 + CCNA_02837 0.33 -0.3 2,990,236 + CCNA_02837 0.36 +0.2 2,990,244 - CCNA_02837 0.38 +0.5 2,990,284 + CCNA_02837 0.45 -0.5 2,990,300 + CCNA_02837 0.48 -0.2 2,990,357 + CCNA_02837 0.58 -2.7 2,990,407 + CCNA_02837 0.67 -0.1 2,990,415 - CCNA_02837 0.68 -0.4 2,990,429 + CCNA_02837 0.71 +1.4 2,990,429 + CCNA_02837 0.71 -1.0 2,990,430 - CCNA_02837 0.71 +0.0 2,990,507 + CCNA_02837 0.84 -0.4 2,990,515 - CCNA_02837 0.86 +0.2 2,990,515 - CCNA_02837 0.86 +0.3 2,990,515 - CCNA_02837 0.86 +0.2 2,990,519 - CCNA_02837 0.87 +0.5 2,990,541 + +0.2 2,990,545 - -1.5 2,990,560 - +0.3
Or see this region's nucleotide sequence