Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02759

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02757 and CCNA_02758 are separated by 57 nucleotidesCCNA_02758 and CCNA_02759 are separated by 152 nucleotidesCCNA_02759 and CCNA_02760 are separated by 60 nucleotidesCCNA_02760 and CCNA_03976 overlap by 1 nucleotidesCCNA_03976 and CCNA_02761 overlap by 11 nucleotidesCCNA_02761 and CCNA_02762 are separated by 205 nucleotides CCNA_02757: CCNA_02757 - sugar fermentation stimulation protein A, at 2,920,986 to 2,921,705 _02757 CCNA_02758: CCNA_02758 - hypothetical protein, at 2,921,763 to 2,922,152 _02758 CCNA_02759: CCNA_02759 - methionine aminopeptidase, at 2,922,305 to 2,923,135 _02759 CCNA_02760: CCNA_02760 - hypothetical protein, at 2,923,196 to 2,923,462 _02760 CCNA_03976: CCNA_03976 - hypothetical protein, at 2,923,462 to 2,923,683 _03976 CCNA_02761: CCNA_02761 - hypothetical protein, at 2,923,673 to 2,923,918 _02761 CCNA_02762: CCNA_02762 - DNA repair protein RadC, at 2,924,124 to 2,924,789 _02762 Position (kb) 2922 2923 2924Strain fitness (log2 ratio) -2 -1 0 1 2at 2921.305 kb on + strand, within CCNA_02757at 2921.313 kb on + strand, within CCNA_02757at 2921.341 kb on + strand, within CCNA_02757at 2921.354 kb on - strand, within CCNA_02757at 2921.377 kb on + strand, within CCNA_02757at 2921.384 kb on + strand, within CCNA_02757at 2921.392 kb on - strand, within CCNA_02757at 2921.410 kb on + strand, within CCNA_02757at 2921.418 kb on - strand, within CCNA_02757at 2921.435 kb on + strand, within CCNA_02757at 2921.435 kb on + strand, within CCNA_02757at 2921.443 kb on - strand, within CCNA_02757at 2921.447 kb on + strand, within CCNA_02757at 2921.447 kb on + strand, within CCNA_02757at 2921.483 kb on + strand, within CCNA_02757at 2921.491 kb on - strand, within CCNA_02757at 2921.505 kb on + strand, within CCNA_02757at 2921.526 kb on + strand, within CCNA_02757at 2921.531 kb on + strand, within CCNA_02757at 2921.559 kb on + strand, within CCNA_02757at 2921.585 kb on + strand, within CCNA_02757at 2921.603 kb on + strand, within CCNA_02757at 2921.608 kb on + strand, within CCNA_02757at 2921.616 kb on - strand, within CCNA_02757at 2921.624 kb on - strand, within CCNA_02757at 2921.624 kb on - strand, within CCNA_02757at 2921.629 kb on - strand, within CCNA_02757at 2921.699 kb on + strandat 2921.699 kb on + strandat 2921.725 kb on + strandat 2921.733 kb on - strandat 2921.761 kb on + strandat 2921.770 kb on + strandat 2921.773 kb on - strandat 2921.799 kb on - strandat 2921.916 kb on + strand, within CCNA_02758at 2921.917 kb on + strand, within CCNA_02758at 2921.937 kb on - strand, within CCNA_02758at 2921.950 kb on - strand, within CCNA_02758at 2921.957 kb on + strand, within CCNA_02758at 2921.963 kb on + strand, within CCNA_02758at 2922.028 kb on + strand, within CCNA_02758at 2922.041 kb on + strand, within CCNA_02758at 2922.041 kb on + strand, within CCNA_02758at 2922.041 kb on + strand, within CCNA_02758at 2922.041 kb on + strand, within CCNA_02758at 2922.049 kb on - strand, within CCNA_02758at 2922.049 kb on - strand, within CCNA_02758at 2922.049 kb on - strand, within CCNA_02758at 2922.056 kb on - strand, within CCNA_02758at 2922.074 kb on + strand, within CCNA_02758at 2922.074 kb on + strand, within CCNA_02758at 2922.074 kb on + strand, within CCNA_02758at 2922.074 kb on + strand, within CCNA_02758at 2922.074 kb on + strand, within CCNA_02758at 2922.074 kb on + strand, within CCNA_02758at 2922.074 kb on + strand, within CCNA_02758at 2922.082 kb on - strand, within CCNA_02758at 2922.082 kb on - strand, within CCNA_02758at 2922.082 kb on - strand, within CCNA_02758at 2922.082 kb on - strand, within CCNA_02758at 2922.082 kb on - strand, within CCNA_02758at 2922.154 kb on + strandat 2922.154 kb on + strandat 2922.154 kb on + strandat 2922.159 kb on + strandat 2922.161 kb on + strandat 2922.162 kb on - strandat 2922.243 kb on + strandat 2922.243 kb on + strandat 2922.251 kb on - strandat 2922.263 kb on + strandat 2922.268 kb on + strandat 2922.350 kb on + strandat 2922.350 kb on + strandat 2922.350 kb on + strandat 2922.363 kb on - strandat 2922.363 kb on - strandat 2922.363 kb on - strandat 2922.364 kb on + strandat 2922.364 kb on + strandat 2922.364 kb on + strandat 2922.364 kb on + strandat 2922.372 kb on - strandat 2922.372 kb on - strandat 2922.379 kb on + strandat 2923.108 kb on + strandat 2923.116 kb on - strandat 2923.242 kb on + strand, within CCNA_02760at 2923.250 kb on - strand, within CCNA_02760at 2923.260 kb on - strand, within CCNA_02760at 2923.297 kb on + strand, within CCNA_02760at 2923.352 kb on + strand, within CCNA_02760at 2923.372 kb on + strand, within CCNA_02760at 2923.408 kb on - strand, within CCNA_02760at 2923.423 kb on + strand, within CCNA_02760at 2923.477 kb on - strandat 2923.500 kb on + strand, within CCNA_03976at 2923.563 kb on - strand, within CCNA_03976at 2923.568 kb on - strand, within CCNA_03976at 2923.684 kb on + strandat 2923.692 kb on - strandat 2923.712 kb on - strand, within CCNA_02761at 2923.712 kb on - strand, within CCNA_02761at 2923.786 kb on - strand, within CCNA_02761at 2923.791 kb on - strand, within CCNA_02761at 2923.834 kb on + strand, within CCNA_02761at 2923.851 kb on + strand, within CCNA_02761at 2923.856 kb on + strand, within CCNA_02761at 2923.864 kb on - strand, within CCNA_02761at 2923.885 kb on + strand, within CCNA_02761at 2923.907 kb on - strandat 2923.912 kb on - strandat 2923.968 kb on - strandat 2923.995 kb on + strandat 2924.005 kb on - strandat 2924.108 kb on - strandat 2924.134 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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2,921,305 + CCNA_02757 0.44 -0.8
2,921,313 + CCNA_02757 0.45 -0.6
2,921,341 + CCNA_02757 0.49 +0.2
2,921,354 - CCNA_02757 0.51 -0.1
2,921,377 + CCNA_02757 0.54 -0.4
2,921,384 + CCNA_02757 0.55 -0.8
2,921,392 - CCNA_02757 0.56 +0.3
2,921,410 + CCNA_02757 0.59 +1.0
2,921,418 - CCNA_02757 0.60 -0.3
2,921,435 + CCNA_02757 0.62 +0.1
2,921,435 + CCNA_02757 0.62 -0.2
2,921,443 - CCNA_02757 0.63 -0.8
2,921,447 + CCNA_02757 0.64 -0.1
2,921,447 + CCNA_02757 0.64 +0.8
2,921,483 + CCNA_02757 0.69 +0.6
2,921,491 - CCNA_02757 0.70 -0.0
2,921,505 + CCNA_02757 0.72 -0.6
2,921,526 + CCNA_02757 0.75 -0.3
2,921,531 + CCNA_02757 0.76 -0.5
2,921,559 + CCNA_02757 0.80 -0.3
2,921,585 + CCNA_02757 0.83 -0.2
2,921,603 + CCNA_02757 0.86 +0.6
2,921,608 + CCNA_02757 0.86 -0.7
2,921,616 - CCNA_02757 0.88 -0.1
2,921,624 - CCNA_02757 0.89 -1.5
2,921,624 - CCNA_02757 0.89 -0.5
2,921,629 - CCNA_02757 0.89 -0.3
2,921,699 + -0.3
2,921,699 + -1.1
2,921,725 + +0.3
2,921,733 - -0.1
2,921,761 + +0.3
2,921,770 + +0.3
2,921,773 - +0.8
2,921,799 - -1.8
2,921,916 + CCNA_02758 0.39 +1.1
2,921,917 + CCNA_02758 0.39 -1.2
2,921,937 - CCNA_02758 0.45 +1.3
2,921,950 - CCNA_02758 0.48 -1.5
2,921,957 + CCNA_02758 0.50 +0.0
2,921,963 + CCNA_02758 0.51 -0.2
2,922,028 + CCNA_02758 0.68 -0.4
2,922,041 + CCNA_02758 0.71 -1.9
2,922,041 + CCNA_02758 0.71 +1.0
2,922,041 + CCNA_02758 0.71 -0.3
2,922,041 + CCNA_02758 0.71 -0.9
2,922,049 - CCNA_02758 0.73 -1.4
2,922,049 - CCNA_02758 0.73 -0.1
2,922,049 - CCNA_02758 0.73 -1.2
2,922,056 - CCNA_02758 0.75 +1.4
2,922,074 + CCNA_02758 0.80 +0.3
2,922,074 + CCNA_02758 0.80 +1.7
2,922,074 + CCNA_02758 0.80 +0.9
2,922,074 + CCNA_02758 0.80 -0.3
2,922,074 + CCNA_02758 0.80 +0.4
2,922,074 + CCNA_02758 0.80 +1.0
2,922,074 + CCNA_02758 0.80 +0.8
2,922,082 - CCNA_02758 0.82 -0.1
2,922,082 - CCNA_02758 0.82 +0.4
2,922,082 - CCNA_02758 0.82 +0.6
2,922,082 - CCNA_02758 0.82 +1.2
2,922,082 - CCNA_02758 0.82 +0.6
2,922,154 + +0.6
2,922,154 + -0.1
2,922,154 + +0.8
2,922,159 + -0.2
2,922,161 + +1.6
2,922,162 - -0.5
2,922,243 + +1.7
2,922,243 + -0.0
2,922,251 - +0.8
2,922,263 + -0.2
2,922,268 + +0.4
2,922,350 + +0.3
2,922,350 + +1.1
2,922,350 + +0.2
2,922,363 - +0.5
2,922,363 - -0.5
2,922,363 - +1.2
2,922,364 + +0.2
2,922,364 + -1.1
2,922,364 + +0.7
2,922,364 + +0.6
2,922,372 - +0.0
2,922,372 - -2.1
2,922,379 + +0.8
2,923,108 + -2.5
2,923,116 - +0.1
2,923,242 + CCNA_02760 0.17 +1.0
2,923,250 - CCNA_02760 0.20 +1.2
2,923,260 - CCNA_02760 0.24 -0.3
2,923,297 + CCNA_02760 0.38 -0.3
2,923,352 + CCNA_02760 0.58 +0.6
2,923,372 + CCNA_02760 0.66 +0.4
2,923,408 - CCNA_02760 0.79 -0.2
2,923,423 + CCNA_02760 0.85 +0.2
2,923,477 - +1.9
2,923,500 + CCNA_03976 0.17 +0.3
2,923,563 - CCNA_03976 0.45 -0.8
2,923,568 - CCNA_03976 0.48 -1.0
2,923,684 + +0.5
2,923,692 - -0.0
2,923,712 - CCNA_02761 0.16 -1.4
2,923,712 - CCNA_02761 0.16 -0.1
2,923,786 - CCNA_02761 0.46 -1.3
2,923,791 - CCNA_02761 0.48 +1.2
2,923,834 + CCNA_02761 0.65 -0.3
2,923,851 + CCNA_02761 0.72 -0.9
2,923,856 + CCNA_02761 0.74 +0.6
2,923,864 - CCNA_02761 0.78 -0.6
2,923,885 + CCNA_02761 0.86 +0.2
2,923,907 - -0.6
2,923,912 - -0.2
2,923,968 - -0.4
2,923,995 + +2.5
2,924,005 - -0.8
2,924,108 - +0.6
2,924,134 - +0.3

Or see this region's nucleotide sequence