Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02757 and CCNA_02758 are separated by 57 nucleotides CCNA_02758 and CCNA_02759 are separated by 152 nucleotides CCNA_02759 and CCNA_02760 are separated by 60 nucleotides CCNA_02760 and CCNA_03976 overlap by 1 nucleotides CCNA_03976 and CCNA_02761 overlap by 11 nucleotides CCNA_02761 and CCNA_02762 are separated by 205 nucleotides
CCNA_02757: CCNA_02757 - sugar fermentation stimulation protein A, at 2,920,986 to 2,921,705
_02757
CCNA_02758: CCNA_02758 - hypothetical protein, at 2,921,763 to 2,922,152
_02758
CCNA_02759: CCNA_02759 - methionine aminopeptidase, at 2,922,305 to 2,923,135
_02759
CCNA_02760: CCNA_02760 - hypothetical protein, at 2,923,196 to 2,923,462
_02760
CCNA_03976: CCNA_03976 - hypothetical protein, at 2,923,462 to 2,923,683
_03976
CCNA_02761: CCNA_02761 - hypothetical protein, at 2,923,673 to 2,923,918
_02761
CCNA_02762: CCNA_02762 - DNA repair protein RadC, at 2,924,124 to 2,924,789
_02762
Position (kb)
2922
2923
2924 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2921.305 kb on + strand, within CCNA_02757 at 2921.313 kb on + strand, within CCNA_02757 at 2921.341 kb on + strand, within CCNA_02757 at 2921.354 kb on - strand, within CCNA_02757 at 2921.377 kb on + strand, within CCNA_02757 at 2921.384 kb on + strand, within CCNA_02757 at 2921.392 kb on - strand, within CCNA_02757 at 2921.410 kb on + strand, within CCNA_02757 at 2921.418 kb on - strand, within CCNA_02757 at 2921.435 kb on + strand, within CCNA_02757 at 2921.435 kb on + strand, within CCNA_02757 at 2921.443 kb on - strand, within CCNA_02757 at 2921.447 kb on + strand, within CCNA_02757 at 2921.447 kb on + strand, within CCNA_02757 at 2921.483 kb on + strand, within CCNA_02757 at 2921.491 kb on - strand, within CCNA_02757 at 2921.505 kb on + strand, within CCNA_02757 at 2921.526 kb on + strand, within CCNA_02757 at 2921.531 kb on + strand, within CCNA_02757 at 2921.559 kb on + strand, within CCNA_02757 at 2921.585 kb on + strand, within CCNA_02757 at 2921.603 kb on + strand, within CCNA_02757 at 2921.608 kb on + strand, within CCNA_02757 at 2921.616 kb on - strand, within CCNA_02757 at 2921.624 kb on - strand, within CCNA_02757 at 2921.624 kb on - strand, within CCNA_02757 at 2921.629 kb on - strand, within CCNA_02757 at 2921.699 kb on + strand at 2921.699 kb on + strand at 2921.725 kb on + strand at 2921.733 kb on - strand at 2921.761 kb on + strand at 2921.770 kb on + strand at 2921.773 kb on - strand at 2921.799 kb on - strand at 2921.916 kb on + strand, within CCNA_02758 at 2921.917 kb on + strand, within CCNA_02758 at 2921.937 kb on - strand, within CCNA_02758 at 2921.950 kb on - strand, within CCNA_02758 at 2921.957 kb on + strand, within CCNA_02758 at 2921.963 kb on + strand, within CCNA_02758 at 2922.028 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.056 kb on - strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.154 kb on + strand at 2922.154 kb on + strand at 2922.154 kb on + strand at 2922.159 kb on + strand at 2922.161 kb on + strand at 2922.162 kb on - strand at 2922.243 kb on + strand at 2922.243 kb on + strand at 2922.251 kb on - strand at 2922.263 kb on + strand at 2922.268 kb on + strand at 2922.350 kb on + strand at 2922.350 kb on + strand at 2922.350 kb on + strand at 2922.363 kb on - strand at 2922.363 kb on - strand at 2922.363 kb on - strand at 2922.364 kb on + strand at 2922.364 kb on + strand at 2922.364 kb on + strand at 2922.364 kb on + strand at 2922.372 kb on - strand at 2922.372 kb on - strand at 2922.379 kb on + strand at 2923.108 kb on + strand at 2923.116 kb on - strand at 2923.242 kb on + strand, within CCNA_02760 at 2923.250 kb on - strand, within CCNA_02760 at 2923.260 kb on - strand, within CCNA_02760 at 2923.297 kb on + strand, within CCNA_02760 at 2923.352 kb on + strand, within CCNA_02760 at 2923.372 kb on + strand, within CCNA_02760 at 2923.408 kb on - strand, within CCNA_02760 at 2923.423 kb on + strand, within CCNA_02760 at 2923.477 kb on - strand at 2923.500 kb on + strand, within CCNA_03976 at 2923.563 kb on - strand, within CCNA_03976 at 2923.568 kb on - strand, within CCNA_03976 at 2923.684 kb on + strand at 2923.692 kb on - strand at 2923.712 kb on - strand, within CCNA_02761 at 2923.712 kb on - strand, within CCNA_02761 at 2923.786 kb on - strand, within CCNA_02761 at 2923.791 kb on - strand, within CCNA_02761 at 2923.834 kb on + strand, within CCNA_02761 at 2923.851 kb on + strand, within CCNA_02761 at 2923.856 kb on + strand, within CCNA_02761 at 2923.864 kb on - strand, within CCNA_02761 at 2923.885 kb on + strand, within CCNA_02761 at 2923.907 kb on - strand at 2923.912 kb on - strand at 2923.968 kb on - strand at 2923.995 kb on + strand at 2924.005 kb on - strand at 2924.108 kb on - strand at 2924.134 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,921,305 + CCNA_02757 0.44 -0.8 2,921,313 + CCNA_02757 0.45 -0.6 2,921,341 + CCNA_02757 0.49 +0.2 2,921,354 - CCNA_02757 0.51 -0.1 2,921,377 + CCNA_02757 0.54 -0.4 2,921,384 + CCNA_02757 0.55 -0.8 2,921,392 - CCNA_02757 0.56 +0.3 2,921,410 + CCNA_02757 0.59 +1.0 2,921,418 - CCNA_02757 0.60 -0.3 2,921,435 + CCNA_02757 0.62 +0.1 2,921,435 + CCNA_02757 0.62 -0.2 2,921,443 - CCNA_02757 0.63 -0.8 2,921,447 + CCNA_02757 0.64 -0.1 2,921,447 + CCNA_02757 0.64 +0.8 2,921,483 + CCNA_02757 0.69 +0.6 2,921,491 - CCNA_02757 0.70 -0.0 2,921,505 + CCNA_02757 0.72 -0.6 2,921,526 + CCNA_02757 0.75 -0.3 2,921,531 + CCNA_02757 0.76 -0.5 2,921,559 + CCNA_02757 0.80 -0.3 2,921,585 + CCNA_02757 0.83 -0.2 2,921,603 + CCNA_02757 0.86 +0.6 2,921,608 + CCNA_02757 0.86 -0.7 2,921,616 - CCNA_02757 0.88 -0.1 2,921,624 - CCNA_02757 0.89 -1.5 2,921,624 - CCNA_02757 0.89 -0.5 2,921,629 - CCNA_02757 0.89 -0.3 2,921,699 + -0.3 2,921,699 + -1.1 2,921,725 + +0.3 2,921,733 - -0.1 2,921,761 + +0.3 2,921,770 + +0.3 2,921,773 - +0.8 2,921,799 - -1.8 2,921,916 + CCNA_02758 0.39 +1.1 2,921,917 + CCNA_02758 0.39 -1.2 2,921,937 - CCNA_02758 0.45 +1.3 2,921,950 - CCNA_02758 0.48 -1.5 2,921,957 + CCNA_02758 0.50 +0.0 2,921,963 + CCNA_02758 0.51 -0.2 2,922,028 + CCNA_02758 0.68 -0.4 2,922,041 + CCNA_02758 0.71 -1.9 2,922,041 + CCNA_02758 0.71 +1.0 2,922,041 + CCNA_02758 0.71 -0.3 2,922,041 + CCNA_02758 0.71 -0.9 2,922,049 - CCNA_02758 0.73 -1.4 2,922,049 - CCNA_02758 0.73 -0.1 2,922,049 - CCNA_02758 0.73 -1.2 2,922,056 - CCNA_02758 0.75 +1.4 2,922,074 + CCNA_02758 0.80 +0.3 2,922,074 + CCNA_02758 0.80 +1.7 2,922,074 + CCNA_02758 0.80 +0.9 2,922,074 + CCNA_02758 0.80 -0.3 2,922,074 + CCNA_02758 0.80 +0.4 2,922,074 + CCNA_02758 0.80 +1.0 2,922,074 + CCNA_02758 0.80 +0.8 2,922,082 - CCNA_02758 0.82 -0.1 2,922,082 - CCNA_02758 0.82 +0.4 2,922,082 - CCNA_02758 0.82 +0.6 2,922,082 - CCNA_02758 0.82 +1.2 2,922,082 - CCNA_02758 0.82 +0.6 2,922,154 + +0.6 2,922,154 + -0.1 2,922,154 + +0.8 2,922,159 + -0.2 2,922,161 + +1.6 2,922,162 - -0.5 2,922,243 + +1.7 2,922,243 + -0.0 2,922,251 - +0.8 2,922,263 + -0.2 2,922,268 + +0.4 2,922,350 + +0.3 2,922,350 + +1.1 2,922,350 + +0.2 2,922,363 - +0.5 2,922,363 - -0.5 2,922,363 - +1.2 2,922,364 + +0.2 2,922,364 + -1.1 2,922,364 + +0.7 2,922,364 + +0.6 2,922,372 - +0.0 2,922,372 - -2.1 2,922,379 + +0.8 2,923,108 + -2.5 2,923,116 - +0.1 2,923,242 + CCNA_02760 0.17 +1.0 2,923,250 - CCNA_02760 0.20 +1.2 2,923,260 - CCNA_02760 0.24 -0.3 2,923,297 + CCNA_02760 0.38 -0.3 2,923,352 + CCNA_02760 0.58 +0.6 2,923,372 + CCNA_02760 0.66 +0.4 2,923,408 - CCNA_02760 0.79 -0.2 2,923,423 + CCNA_02760 0.85 +0.2 2,923,477 - +1.9 2,923,500 + CCNA_03976 0.17 +0.3 2,923,563 - CCNA_03976 0.45 -0.8 2,923,568 - CCNA_03976 0.48 -1.0 2,923,684 + +0.5 2,923,692 - -0.0 2,923,712 - CCNA_02761 0.16 -1.4 2,923,712 - CCNA_02761 0.16 -0.1 2,923,786 - CCNA_02761 0.46 -1.3 2,923,791 - CCNA_02761 0.48 +1.2 2,923,834 + CCNA_02761 0.65 -0.3 2,923,851 + CCNA_02761 0.72 -0.9 2,923,856 + CCNA_02761 0.74 +0.6 2,923,864 - CCNA_02761 0.78 -0.6 2,923,885 + CCNA_02761 0.86 +0.2 2,923,907 - -0.6 2,923,912 - -0.2 2,923,968 - -0.4 2,923,995 + +2.5 2,924,005 - -0.8 2,924,108 - +0.6 2,924,134 - +0.3
Or see this region's nucleotide sequence