Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02734 and CCNA_02735 are separated by 43 nucleotides CCNA_02735 and CCNA_02736 are separated by 4 nucleotides CCNA_02736 and CCNA_02737 are separated by 8 nucleotides CCNA_02737 and CCNA_02738 are separated by 68 nucleotides
CCNA_02734: CCNA_02734 - serine acetyltransferase, at 2,896,213 to 2,897,085
_02734
CCNA_02735: CCNA_02735 - ADP-ribose pyrophosphatase family protein, at 2,897,129 to 2,897,845
_02735
CCNA_02736: CCNA_02736 - nitroreductase family, at 2,897,850 to 2,898,464
_02736
CCNA_02737: CCNA_02737 - queuosine biosynthesis protein QueF, at 2,898,473 to 2,898,928
_02737
CCNA_02738: CCNA_02738 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 2,898,997 to 2,899,818
_02738
Position (kb)
2897
2898
2899 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2896.875 kb on + strand, within CCNA_02734 at 2897.008 kb on - strand at 2897.063 kb on - strand at 2897.127 kb on + strand at 2897.138 kb on + strand at 2897.164 kb on - strand at 2897.178 kb on + strand at 2897.186 kb on - strand at 2897.186 kb on - strand at 2897.190 kb on + strand at 2897.201 kb on - strand, within CCNA_02735 at 2897.201 kb on - strand, within CCNA_02735 at 2897.223 kb on + strand, within CCNA_02735 at 2897.288 kb on - strand, within CCNA_02735 at 2897.292 kb on - strand, within CCNA_02735 at 2897.325 kb on + strand, within CCNA_02735 at 2897.347 kb on - strand, within CCNA_02735 at 2897.442 kb on + strand, within CCNA_02735 at 2897.463 kb on - strand, within CCNA_02735 at 2897.509 kb on + strand, within CCNA_02735 at 2897.517 kb on - strand, within CCNA_02735 at 2897.527 kb on - strand, within CCNA_02735 at 2897.631 kb on + strand, within CCNA_02735 at 2897.639 kb on - strand, within CCNA_02735 at 2897.642 kb on + strand, within CCNA_02735 at 2897.663 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.709 kb on + strand, within CCNA_02735 at 2897.710 kb on + strand, within CCNA_02735 at 2897.717 kb on - strand, within CCNA_02735 at 2897.718 kb on - strand, within CCNA_02735 at 2897.718 kb on - strand, within CCNA_02735 at 2897.725 kb on - strand, within CCNA_02735 at 2897.732 kb on - strand, within CCNA_02735 at 2897.744 kb on - strand, within CCNA_02735 at 2897.796 kb on - strand at 2897.824 kb on - strand at 2897.852 kb on + strand at 2897.855 kb on - strand at 2897.857 kb on + strand at 2897.865 kb on - strand at 2897.891 kb on - strand at 2897.896 kb on - strand at 2897.897 kb on + strand at 2897.916 kb on + strand, within CCNA_02736 at 2897.965 kb on - strand, within CCNA_02736 at 2898.052 kb on + strand, within CCNA_02736 at 2898.074 kb on + strand, within CCNA_02736 at 2898.082 kb on - strand, within CCNA_02736 at 2898.082 kb on - strand, within CCNA_02736 at 2898.082 kb on - strand, within CCNA_02736 at 2898.084 kb on - strand, within CCNA_02736 at 2898.117 kb on + strand, within CCNA_02736 at 2898.160 kb on - strand, within CCNA_02736 at 2898.178 kb on + strand, within CCNA_02736 at 2898.220 kb on + strand, within CCNA_02736 at 2898.220 kb on + strand, within CCNA_02736 at 2898.220 kb on + strand, within CCNA_02736 at 2898.230 kb on + strand, within CCNA_02736 at 2898.230 kb on + strand, within CCNA_02736 at 2898.279 kb on + strand, within CCNA_02736 at 2898.279 kb on + strand, within CCNA_02736 at 2898.282 kb on - strand, within CCNA_02736 at 2898.284 kb on + strand, within CCNA_02736 at 2898.287 kb on - strand, within CCNA_02736 at 2898.299 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.377 kb on - strand, within CCNA_02736 at 2898.388 kb on - strand, within CCNA_02736 at 2898.459 kb on + strand at 2898.542 kb on - strand, within CCNA_02737 at 2898.585 kb on - strand, within CCNA_02737 at 2898.653 kb on + strand, within CCNA_02737 at 2898.656 kb on - strand, within CCNA_02737 at 2898.656 kb on - strand, within CCNA_02737 at 2898.695 kb on + strand, within CCNA_02737 at 2898.744 kb on + strand, within CCNA_02737 at 2898.748 kb on - strand, within CCNA_02737 at 2898.759 kb on + strand, within CCNA_02737 at 2898.767 kb on - strand, within CCNA_02737 at 2898.814 kb on + strand, within CCNA_02737 at 2898.827 kb on - strand, within CCNA_02737 at 2898.846 kb on - strand, within CCNA_02737 at 2898.894 kb on + strand at 2898.899 kb on + strand at 2898.936 kb on + strand at 2898.944 kb on - strand at 2898.944 kb on - strand at 2898.944 kb on - strand at 2898.944 kb on - strand at 2898.999 kb on + strand at 2899.036 kb on + strand at 2899.036 kb on - strand at 2899.069 kb on + strand at 2899.077 kb on - strand at 2899.109 kb on + strand, within CCNA_02738 at 2899.153 kb on + strand, within CCNA_02738 at 2899.161 kb on - strand, within CCNA_02738 at 2899.181 kb on - strand, within CCNA_02738 at 2899.181 kb on - strand, within CCNA_02738 at 2899.181 kb on - strand, within CCNA_02738 at 2899.282 kb on + strand, within CCNA_02738 at 2899.290 kb on - strand, within CCNA_02738 at 2899.290 kb on - strand, within CCNA_02738 at 2899.292 kb on - strand, within CCNA_02738 at 2899.292 kb on - strand, within CCNA_02738 at 2899.325 kb on - strand, within CCNA_02738 at 2899.325 kb on - strand, within CCNA_02738 at 2899.327 kb on + strand, within CCNA_02738 at 2899.335 kb on - strand, within CCNA_02738 at 2899.362 kb on + strand, within CCNA_02738 at 2899.389 kb on + strand, within CCNA_02738 at 2899.417 kb on + strand, within CCNA_02738 at 2899.419 kb on + strand, within CCNA_02738 at 2899.419 kb on + strand, within CCNA_02738 at 2899.425 kb on - strand, within CCNA_02738 at 2899.425 kb on - strand, within CCNA_02738 at 2899.427 kb on - strand, within CCNA_02738 at 2899.449 kb on + strand, within CCNA_02738 at 2899.450 kb on + strand, within CCNA_02738 at 2899.457 kb on - strand, within CCNA_02738
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,896,875 + CCNA_02734 0.76 +0.0 2,897,008 - -0.4 2,897,063 - +0.1 2,897,127 + -2.1 2,897,138 + +0.5 2,897,164 - +0.1 2,897,178 + +0.2 2,897,186 - +0.5 2,897,186 - +0.1 2,897,190 + -0.0 2,897,201 - CCNA_02735 0.10 +1.4 2,897,201 - CCNA_02735 0.10 +0.7 2,897,223 + CCNA_02735 0.13 +0.0 2,897,288 - CCNA_02735 0.22 +0.1 2,897,292 - CCNA_02735 0.23 -0.3 2,897,325 + CCNA_02735 0.27 +0.5 2,897,347 - CCNA_02735 0.30 +1.2 2,897,442 + CCNA_02735 0.44 -0.3 2,897,463 - CCNA_02735 0.47 +0.4 2,897,509 + CCNA_02735 0.53 -0.1 2,897,517 - CCNA_02735 0.54 +0.0 2,897,527 - CCNA_02735 0.56 +0.0 2,897,631 + CCNA_02735 0.70 -0.8 2,897,639 - CCNA_02735 0.71 +0.3 2,897,642 + CCNA_02735 0.72 -0.4 2,897,663 + CCNA_02735 0.74 -0.3 2,897,691 + CCNA_02735 0.78 -0.2 2,897,691 + CCNA_02735 0.78 -0.1 2,897,691 + CCNA_02735 0.78 -0.6 2,897,699 - CCNA_02735 0.79 +0.1 2,897,699 - CCNA_02735 0.79 -0.4 2,897,699 - CCNA_02735 0.79 -2.1 2,897,699 - CCNA_02735 0.79 +1.0 2,897,699 - CCNA_02735 0.79 +1.2 2,897,709 + CCNA_02735 0.81 +1.6 2,897,710 + CCNA_02735 0.81 -1.3 2,897,717 - CCNA_02735 0.82 -0.7 2,897,718 - CCNA_02735 0.82 -0.4 2,897,718 - CCNA_02735 0.82 +0.6 2,897,725 - CCNA_02735 0.83 +1.2 2,897,732 - CCNA_02735 0.84 -0.8 2,897,744 - CCNA_02735 0.86 -0.4 2,897,796 - +2.6 2,897,824 - +1.6 2,897,852 + -0.9 2,897,855 - -0.0 2,897,857 + +0.4 2,897,865 - +0.3 2,897,891 - +0.8 2,897,896 - +1.4 2,897,897 + +2.0 2,897,916 + CCNA_02736 0.11 -0.1 2,897,965 - CCNA_02736 0.19 -0.6 2,898,052 + CCNA_02736 0.33 -0.2 2,898,074 + CCNA_02736 0.36 -0.7 2,898,082 - CCNA_02736 0.38 -0.4 2,898,082 - CCNA_02736 0.38 -0.4 2,898,082 - CCNA_02736 0.38 -2.0 2,898,084 - CCNA_02736 0.38 +0.7 2,898,117 + CCNA_02736 0.43 -0.7 2,898,160 - CCNA_02736 0.50 +0.6 2,898,178 + CCNA_02736 0.53 -0.9 2,898,220 + CCNA_02736 0.60 +0.2 2,898,220 + CCNA_02736 0.60 -1.2 2,898,220 + CCNA_02736 0.60 -1.0 2,898,230 + CCNA_02736 0.62 -0.6 2,898,230 + CCNA_02736 0.62 +0.9 2,898,279 + CCNA_02736 0.70 -0.8 2,898,279 + CCNA_02736 0.70 -0.3 2,898,282 - CCNA_02736 0.70 +1.3 2,898,284 + CCNA_02736 0.71 -0.0 2,898,287 - CCNA_02736 0.71 -1.0 2,898,299 + CCNA_02736 0.73 +0.5 2,898,319 + CCNA_02736 0.76 -1.1 2,898,319 + CCNA_02736 0.76 +0.4 2,898,319 + CCNA_02736 0.76 -0.4 2,898,319 + CCNA_02736 0.76 +0.2 2,898,319 + CCNA_02736 0.76 +0.7 2,898,319 + CCNA_02736 0.76 +1.2 2,898,319 + CCNA_02736 0.76 +1.9 2,898,319 + CCNA_02736 0.76 +0.6 2,898,319 + CCNA_02736 0.76 -0.1 2,898,327 - CCNA_02736 0.78 -0.0 2,898,327 - CCNA_02736 0.78 +0.7 2,898,327 - CCNA_02736 0.78 +1.3 2,898,327 - CCNA_02736 0.78 +0.1 2,898,327 - CCNA_02736 0.78 +0.1 2,898,327 - CCNA_02736 0.78 +0.1 2,898,327 - CCNA_02736 0.78 -0.8 2,898,377 - CCNA_02736 0.86 +0.2 2,898,388 - CCNA_02736 0.87 +0.5 2,898,459 + +0.7 2,898,542 - CCNA_02737 0.15 -0.4 2,898,585 - CCNA_02737 0.25 -0.7 2,898,653 + CCNA_02737 0.39 -0.7 2,898,656 - CCNA_02737 0.40 +1.4 2,898,656 - CCNA_02737 0.40 -0.9 2,898,695 + CCNA_02737 0.49 -1.6 2,898,744 + CCNA_02737 0.59 +0.4 2,898,748 - CCNA_02737 0.60 -0.1 2,898,759 + CCNA_02737 0.63 -0.3 2,898,767 - CCNA_02737 0.64 -0.9 2,898,814 + CCNA_02737 0.75 +0.1 2,898,827 - CCNA_02737 0.78 -0.2 2,898,846 - CCNA_02737 0.82 +1.0 2,898,894 + -1.4 2,898,899 + -0.4 2,898,936 + +1.4 2,898,944 - -0.9 2,898,944 - +0.6 2,898,944 - -0.1 2,898,944 - +0.4 2,898,999 + +0.8 2,899,036 + -0.7 2,899,036 - -0.2 2,899,069 + -0.2 2,899,077 - +0.1 2,899,109 + CCNA_02738 0.14 -0.1 2,899,153 + CCNA_02738 0.19 -1.0 2,899,161 - CCNA_02738 0.20 +0.4 2,899,181 - CCNA_02738 0.22 +0.6 2,899,181 - CCNA_02738 0.22 +0.5 2,899,181 - CCNA_02738 0.22 +0.2 2,899,282 + CCNA_02738 0.35 +1.0 2,899,290 - CCNA_02738 0.36 +0.5 2,899,290 - CCNA_02738 0.36 +1.3 2,899,292 - CCNA_02738 0.36 +0.0 2,899,292 - CCNA_02738 0.36 +0.1 2,899,325 - CCNA_02738 0.40 +1.2 2,899,325 - CCNA_02738 0.40 -0.3 2,899,327 + CCNA_02738 0.40 -1.5 2,899,335 - CCNA_02738 0.41 +1.0 2,899,362 + CCNA_02738 0.44 +0.7 2,899,389 + CCNA_02738 0.48 +0.1 2,899,417 + CCNA_02738 0.51 +0.4 2,899,419 + CCNA_02738 0.51 -0.7 2,899,419 + CCNA_02738 0.51 -0.5 2,899,425 - CCNA_02738 0.52 +0.4 2,899,425 - CCNA_02738 0.52 -0.1 2,899,427 - CCNA_02738 0.52 +0.6 2,899,449 + CCNA_02738 0.55 -0.3 2,899,450 + CCNA_02738 0.55 +0.4 2,899,457 - CCNA_02738 0.56 +0.9
Or see this region's nucleotide sequence