Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02733 and CCNA_02734 are separated by 0 nucleotides CCNA_02734 and CCNA_02735 are separated by 43 nucleotides CCNA_02735 and CCNA_02736 are separated by 4 nucleotides
CCNA_02733: CCNA_02733 - glutaminyl-peptide cyclotransferase, at 2,895,430 to 2,896,212
_02733
CCNA_02734: CCNA_02734 - serine acetyltransferase, at 2,896,213 to 2,897,085
_02734
CCNA_02735: CCNA_02735 - ADP-ribose pyrophosphatase family protein, at 2,897,129 to 2,897,845
_02735
CCNA_02736: CCNA_02736 - nitroreductase family, at 2,897,850 to 2,898,464
_02736
Position (kb)
2896
2897
2898 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2895.256 kb on - strand at 2895.272 kb on - strand at 2895.297 kb on - strand at 2895.307 kb on - strand at 2895.307 kb on - strand at 2895.314 kb on + strand at 2895.322 kb on - strand at 2895.350 kb on - strand at 2895.383 kb on + strand at 2895.383 kb on - strand at 2895.462 kb on + strand at 2895.467 kb on + strand at 2895.467 kb on + strand at 2895.470 kb on - strand at 2895.475 kb on - strand at 2895.475 kb on - strand at 2895.516 kb on - strand, within CCNA_02733 at 2895.523 kb on + strand, within CCNA_02733 at 2895.531 kb on - strand, within CCNA_02733 at 2895.531 kb on - strand, within CCNA_02733 at 2895.531 kb on - strand, within CCNA_02733 at 2895.591 kb on - strand, within CCNA_02733 at 2895.592 kb on - strand, within CCNA_02733 at 2895.611 kb on + strand, within CCNA_02733 at 2895.647 kb on - strand, within CCNA_02733 at 2895.649 kb on + strand, within CCNA_02733 at 2895.670 kb on - strand, within CCNA_02733 at 2895.670 kb on - strand, within CCNA_02733 at 2895.670 kb on - strand, within CCNA_02733 at 2895.681 kb on - strand, within CCNA_02733 at 2895.688 kb on - strand, within CCNA_02733 at 2895.771 kb on - strand, within CCNA_02733 at 2895.815 kb on + strand, within CCNA_02733 at 2895.816 kb on - strand, within CCNA_02733 at 2895.816 kb on - strand, within CCNA_02733 at 2895.816 kb on - strand, within CCNA_02733 at 2895.823 kb on - strand, within CCNA_02733 at 2895.833 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.936 kb on - strand, within CCNA_02733 at 2895.979 kb on - strand, within CCNA_02733 at 2896.016 kb on + strand, within CCNA_02733 at 2896.021 kb on + strand, within CCNA_02733 at 2896.021 kb on + strand, within CCNA_02733 at 2896.029 kb on - strand, within CCNA_02733 at 2896.029 kb on - strand, within CCNA_02733 at 2896.029 kb on - strand, within CCNA_02733 at 2896.036 kb on - strand, within CCNA_02733 at 2896.063 kb on - strand, within CCNA_02733 at 2896.065 kb on + strand, within CCNA_02733 at 2896.088 kb on - strand, within CCNA_02733 at 2896.088 kb on - strand, within CCNA_02733 at 2896.102 kb on + strand, within CCNA_02733 at 2896.117 kb on - strand, within CCNA_02733 at 2896.219 kb on - strand at 2896.232 kb on + strand at 2896.240 kb on - strand at 2896.252 kb on - strand at 2896.262 kb on - strand at 2896.421 kb on + strand, within CCNA_02734 at 2896.488 kb on + strand, within CCNA_02734 at 2896.505 kb on + strand, within CCNA_02734 at 2896.561 kb on - strand, within CCNA_02734 at 2896.607 kb on + strand, within CCNA_02734 at 2896.630 kb on + strand, within CCNA_02734 at 2896.640 kb on + strand, within CCNA_02734 at 2896.688 kb on + strand, within CCNA_02734 at 2896.694 kb on - strand, within CCNA_02734 at 2896.736 kb on + strand, within CCNA_02734 at 2896.739 kb on - strand, within CCNA_02734 at 2896.772 kb on + strand, within CCNA_02734 at 2896.772 kb on + strand, within CCNA_02734 at 2896.780 kb on - strand, within CCNA_02734 at 2896.875 kb on + strand, within CCNA_02734 at 2897.008 kb on - strand at 2897.063 kb on - strand at 2897.127 kb on + strand at 2897.138 kb on + strand at 2897.164 kb on - strand at 2897.178 kb on + strand at 2897.186 kb on - strand at 2897.186 kb on - strand at 2897.190 kb on + strand at 2897.201 kb on - strand, within CCNA_02735 at 2897.201 kb on - strand, within CCNA_02735 at 2897.223 kb on + strand, within CCNA_02735 at 2897.288 kb on - strand, within CCNA_02735 at 2897.292 kb on - strand, within CCNA_02735 at 2897.325 kb on + strand, within CCNA_02735 at 2897.347 kb on - strand, within CCNA_02735 at 2897.442 kb on + strand, within CCNA_02735 at 2897.463 kb on - strand, within CCNA_02735 at 2897.509 kb on + strand, within CCNA_02735 at 2897.517 kb on - strand, within CCNA_02735 at 2897.527 kb on - strand, within CCNA_02735 at 2897.631 kb on + strand, within CCNA_02735 at 2897.639 kb on - strand, within CCNA_02735 at 2897.642 kb on + strand, within CCNA_02735 at 2897.663 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.709 kb on + strand, within CCNA_02735 at 2897.710 kb on + strand, within CCNA_02735 at 2897.717 kb on - strand, within CCNA_02735 at 2897.718 kb on - strand, within CCNA_02735 at 2897.718 kb on - strand, within CCNA_02735 at 2897.725 kb on - strand, within CCNA_02735 at 2897.732 kb on - strand, within CCNA_02735 at 2897.744 kb on - strand, within CCNA_02735 at 2897.796 kb on - strand at 2897.824 kb on - strand at 2897.852 kb on + strand at 2897.855 kb on - strand at 2897.857 kb on + strand at 2897.865 kb on - strand at 2897.891 kb on - strand at 2897.896 kb on - strand at 2897.897 kb on + strand at 2897.916 kb on + strand, within CCNA_02736 at 2897.965 kb on - strand, within CCNA_02736 at 2898.052 kb on + strand, within CCNA_02736 at 2898.074 kb on + strand, within CCNA_02736 at 2898.082 kb on - strand, within CCNA_02736 at 2898.082 kb on - strand, within CCNA_02736 at 2898.082 kb on - strand, within CCNA_02736 at 2898.084 kb on - strand, within CCNA_02736
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,895,256 - +0.4 2,895,272 - +0.4 2,895,297 - +2.0 2,895,307 - +0.3 2,895,307 - +0.4 2,895,314 + -0.4 2,895,322 - -0.0 2,895,350 - -1.0 2,895,383 + -0.1 2,895,383 - -0.4 2,895,462 + -0.3 2,895,467 + +0.7 2,895,467 + +0.2 2,895,470 - +0.2 2,895,475 - -0.0 2,895,475 - +0.1 2,895,516 - CCNA_02733 0.11 +0.1 2,895,523 + CCNA_02733 0.12 -0.5 2,895,531 - CCNA_02733 0.13 -0.4 2,895,531 - CCNA_02733 0.13 +0.1 2,895,531 - CCNA_02733 0.13 +1.7 2,895,591 - CCNA_02733 0.21 +0.9 2,895,592 - CCNA_02733 0.21 -0.2 2,895,611 + CCNA_02733 0.23 +0.9 2,895,647 - CCNA_02733 0.28 -1.5 2,895,649 + CCNA_02733 0.28 -1.3 2,895,670 - CCNA_02733 0.31 -0.7 2,895,670 - CCNA_02733 0.31 -0.3 2,895,670 - CCNA_02733 0.31 -0.0 2,895,681 - CCNA_02733 0.32 +0.5 2,895,688 - CCNA_02733 0.33 +1.0 2,895,771 - CCNA_02733 0.44 -0.4 2,895,815 + CCNA_02733 0.49 -0.3 2,895,816 - CCNA_02733 0.49 +0.3 2,895,816 - CCNA_02733 0.49 +0.1 2,895,816 - CCNA_02733 0.49 +0.7 2,895,823 - CCNA_02733 0.50 +0.1 2,895,833 + CCNA_02733 0.51 -0.2 2,895,893 + CCNA_02733 0.59 -1.4 2,895,893 + CCNA_02733 0.59 +0.1 2,895,893 + CCNA_02733 0.59 -0.1 2,895,893 + CCNA_02733 0.59 -0.1 2,895,893 + CCNA_02733 0.59 -0.3 2,895,893 + CCNA_02733 0.59 +0.2 2,895,893 + CCNA_02733 0.59 -0.8 2,895,893 + CCNA_02733 0.59 +0.1 2,895,901 - CCNA_02733 0.60 +1.3 2,895,901 - CCNA_02733 0.60 +0.1 2,895,901 - CCNA_02733 0.60 -0.1 2,895,901 - CCNA_02733 0.60 +0.7 2,895,936 - CCNA_02733 0.65 -0.2 2,895,979 - CCNA_02733 0.70 +0.9 2,896,016 + CCNA_02733 0.75 -0.9 2,896,021 + CCNA_02733 0.75 +0.0 2,896,021 + CCNA_02733 0.75 +1.5 2,896,029 - CCNA_02733 0.77 -0.0 2,896,029 - CCNA_02733 0.77 +1.7 2,896,029 - CCNA_02733 0.77 -0.1 2,896,036 - CCNA_02733 0.77 -0.4 2,896,063 - CCNA_02733 0.81 +0.3 2,896,065 + CCNA_02733 0.81 +0.9 2,896,088 - CCNA_02733 0.84 +0.6 2,896,088 - CCNA_02733 0.84 -0.0 2,896,102 + CCNA_02733 0.86 -0.1 2,896,117 - CCNA_02733 0.88 -0.3 2,896,219 - +0.1 2,896,232 + +0.4 2,896,240 - +0.4 2,896,252 - -0.1 2,896,262 - +0.1 2,896,421 + CCNA_02734 0.24 +0.2 2,896,488 + CCNA_02734 0.32 +0.5 2,896,505 + CCNA_02734 0.33 +0.7 2,896,561 - CCNA_02734 0.40 +0.2 2,896,607 + CCNA_02734 0.45 -0.2 2,896,630 + CCNA_02734 0.48 -0.1 2,896,640 + CCNA_02734 0.49 +0.9 2,896,688 + CCNA_02734 0.54 +0.0 2,896,694 - CCNA_02734 0.55 -0.6 2,896,736 + CCNA_02734 0.60 -0.3 2,896,739 - CCNA_02734 0.60 -0.8 2,896,772 + CCNA_02734 0.64 -1.2 2,896,772 + CCNA_02734 0.64 +0.4 2,896,780 - CCNA_02734 0.65 -0.5 2,896,875 + CCNA_02734 0.76 +0.0 2,897,008 - -0.4 2,897,063 - +0.1 2,897,127 + -2.1 2,897,138 + +0.5 2,897,164 - +0.1 2,897,178 + +0.2 2,897,186 - +0.5 2,897,186 - +0.1 2,897,190 + -0.0 2,897,201 - CCNA_02735 0.10 +1.4 2,897,201 - CCNA_02735 0.10 +0.7 2,897,223 + CCNA_02735 0.13 +0.0 2,897,288 - CCNA_02735 0.22 +0.1 2,897,292 - CCNA_02735 0.23 -0.3 2,897,325 + CCNA_02735 0.27 +0.5 2,897,347 - CCNA_02735 0.30 +1.2 2,897,442 + CCNA_02735 0.44 -0.3 2,897,463 - CCNA_02735 0.47 +0.4 2,897,509 + CCNA_02735 0.53 -0.1 2,897,517 - CCNA_02735 0.54 +0.0 2,897,527 - CCNA_02735 0.56 +0.0 2,897,631 + CCNA_02735 0.70 -0.8 2,897,639 - CCNA_02735 0.71 +0.3 2,897,642 + CCNA_02735 0.72 -0.4 2,897,663 + CCNA_02735 0.74 -0.3 2,897,691 + CCNA_02735 0.78 -0.2 2,897,691 + CCNA_02735 0.78 -0.1 2,897,691 + CCNA_02735 0.78 -0.6 2,897,699 - CCNA_02735 0.79 +0.1 2,897,699 - CCNA_02735 0.79 -0.4 2,897,699 - CCNA_02735 0.79 -2.1 2,897,699 - CCNA_02735 0.79 +1.0 2,897,699 - CCNA_02735 0.79 +1.2 2,897,709 + CCNA_02735 0.81 +1.6 2,897,710 + CCNA_02735 0.81 -1.3 2,897,717 - CCNA_02735 0.82 -0.7 2,897,718 - CCNA_02735 0.82 -0.4 2,897,718 - CCNA_02735 0.82 +0.6 2,897,725 - CCNA_02735 0.83 +1.2 2,897,732 - CCNA_02735 0.84 -0.8 2,897,744 - CCNA_02735 0.86 -0.4 2,897,796 - +2.6 2,897,824 - +1.6 2,897,852 + -0.9 2,897,855 - -0.0 2,897,857 + +0.4 2,897,865 - +0.3 2,897,891 - +0.8 2,897,896 - +1.4 2,897,897 + +2.0 2,897,916 + CCNA_02736 0.11 -0.1 2,897,965 - CCNA_02736 0.19 -0.6 2,898,052 + CCNA_02736 0.33 -0.2 2,898,074 + CCNA_02736 0.36 -0.7 2,898,082 - CCNA_02736 0.38 -0.4 2,898,082 - CCNA_02736 0.38 -0.4 2,898,082 - CCNA_02736 0.38 -2.0 2,898,084 - CCNA_02736 0.38 +0.7
Or see this region's nucleotide sequence