Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02579 and CCNA_02580 are separated by 10 nucleotides CCNA_02580 and CCNA_02581 are separated by 310 nucleotides CCNA_02581 and CCNA_02582 overlap by 14 nucleotides CCNA_02582 and CCNA_02583 are separated by 66 nucleotides CCNA_02583 and CCNA_03970 are separated by 105 nucleotides
CCNA_02579: CCNA_02579 - cytochrome P450, at 2,729,929 to 2,731,203
_02579
CCNA_02580: CCNA_02580 - rubredoxin, at 2,731,214 to 2,731,393
_02580
CCNA_02581: CCNA_02581 - hypothetical protein, at 2,731,704 to 2,732,189
_02581
CCNA_02582: CCNA_02582 - hypothetical protein, at 2,732,176 to 2,732,322
_02582
CCNA_02583: CCNA_02583 - phosphoribosylformylglycinamidine synthase I, at 2,732,389 to 2,733,051
_02583
CCNA_03970: CCNA_03970 - hypothetical protein, at 2,733,157 to 2,733,348
_03970
Position (kb)
2732
2733 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2731.180 kb on - strand at 2731.226 kb on - strand at 2731.233 kb on + strand, within CCNA_02580 at 2731.282 kb on - strand, within CCNA_02580 at 2731.342 kb on - strand, within CCNA_02580 at 2731.348 kb on + strand, within CCNA_02580 at 2731.354 kb on - strand, within CCNA_02580 at 2731.386 kb on + strand at 2731.387 kb on + strand at 2731.387 kb on + strand at 2731.413 kb on + strand at 2731.418 kb on + strand at 2731.444 kb on - strand at 2731.480 kb on - strand at 2731.482 kb on - strand at 2731.508 kb on + strand at 2731.508 kb on + strand at 2731.508 kb on + strand at 2731.508 kb on + strand at 2731.508 kb on + strand at 2731.508 kb on + strand at 2731.512 kb on - strand at 2731.516 kb on - strand at 2731.525 kb on + strand at 2731.525 kb on + strand at 2731.525 kb on + strand at 2731.525 kb on + strand at 2731.533 kb on - strand at 2731.553 kb on + strand at 2731.553 kb on + strand at 2731.665 kb on - strand at 2731.666 kb on - strand at 2731.682 kb on - strand at 2731.694 kb on - strand at 2731.718 kb on - strand at 2731.722 kb on - strand at 2731.725 kb on + strand at 2731.730 kb on + strand at 2731.730 kb on + strand at 2731.738 kb on - strand at 2731.743 kb on + strand at 2731.745 kb on + strand at 2731.800 kb on - strand, within CCNA_02581 at 2731.822 kb on - strand, within CCNA_02581 at 2731.846 kb on + strand, within CCNA_02581 at 2731.864 kb on - strand, within CCNA_02581 at 2731.867 kb on + strand, within CCNA_02581 at 2731.880 kb on - strand, within CCNA_02581 at 2731.898 kb on + strand, within CCNA_02581 at 2731.931 kb on + strand, within CCNA_02581 at 2731.975 kb on - strand, within CCNA_02581 at 2732.012 kb on + strand, within CCNA_02581 at 2732.014 kb on + strand, within CCNA_02581 at 2732.020 kb on - strand, within CCNA_02581 at 2732.042 kb on - strand, within CCNA_02581 at 2732.064 kb on - strand, within CCNA_02581 at 2732.067 kb on + strand, within CCNA_02581 at 2732.102 kb on - strand, within CCNA_02581 at 2732.137 kb on + strand, within CCNA_02581 at 2732.182 kb on - strand at 2732.216 kb on + strand, within CCNA_02582 at 2732.253 kb on + strand, within CCNA_02582 at 2732.254 kb on - strand, within CCNA_02582 at 2732.274 kb on - strand, within CCNA_02582 at 2732.276 kb on - strand, within CCNA_02582 at 2732.276 kb on - strand, within CCNA_02582 at 2732.293 kb on + strand, within CCNA_02582 at 2732.356 kb on - strand at 2732.371 kb on + strand at 2732.379 kb on - strand at 2732.459 kb on + strand, within CCNA_02583 at 2732.467 kb on - strand, within CCNA_02583 at 2732.467 kb on - strand, within CCNA_02583 at 2732.467 kb on - strand, within CCNA_02583 at 2732.467 kb on - strand, within CCNA_02583 at 2732.558 kb on + strand, within CCNA_02583 at 2732.570 kb on - strand, within CCNA_02583 at 2732.675 kb on - strand, within CCNA_02583 at 2732.703 kb on - strand, within CCNA_02583 at 2732.712 kb on + strand, within CCNA_02583 at 2732.773 kb on - strand, within CCNA_02583 at 2732.790 kb on + strand, within CCNA_02583 at 2732.808 kb on - strand, within CCNA_02583 at 2732.813 kb on + strand, within CCNA_02583 at 2732.817 kb on + strand, within CCNA_02583 at 2732.823 kb on + strand, within CCNA_02583 at 2732.832 kb on - strand, within CCNA_02583 at 2732.867 kb on - strand, within CCNA_02583 at 2732.880 kb on - strand, within CCNA_02583 at 2732.881 kb on + strand, within CCNA_02583 at 2732.889 kb on - strand, within CCNA_02583 at 2732.914 kb on + strand, within CCNA_02583 at 2732.967 kb on + strand, within CCNA_02583 at 2732.975 kb on - strand, within CCNA_02583 at 2733.003 kb on - strand at 2733.003 kb on - strand at 2733.014 kb on + strand at 2733.019 kb on + strand at 2733.019 kb on + strand at 2733.027 kb on - strand at 2733.027 kb on - strand at 2733.027 kb on - strand at 2733.027 kb on - strand at 2733.052 kb on - strand at 2733.080 kb on + strand at 2733.099 kb on + strand at 2733.107 kb on - strand at 2733.177 kb on - strand, within CCNA_03970 at 2733.217 kb on + strand, within CCNA_03970 at 2733.239 kb on + strand, within CCNA_03970 at 2733.301 kb on + strand, within CCNA_03970
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,731,180 - +0.7 2,731,226 - +1.1 2,731,233 + CCNA_02580 0.11 +0.4 2,731,282 - CCNA_02580 0.38 -0.8 2,731,342 - CCNA_02580 0.71 +1.1 2,731,348 + CCNA_02580 0.74 -1.0 2,731,354 - CCNA_02580 0.78 -0.4 2,731,386 + +0.1 2,731,387 + +1.0 2,731,387 + -0.6 2,731,413 + +0.2 2,731,418 + -0.4 2,731,444 - -0.5 2,731,480 - -0.8 2,731,482 - -0.1 2,731,508 + +0.1 2,731,508 + +0.1 2,731,508 + +0.2 2,731,508 + +1.2 2,731,508 + +0.2 2,731,508 + -0.9 2,731,512 - +1.0 2,731,516 - +0.1 2,731,525 + +0.3 2,731,525 + -0.3 2,731,525 + +1.6 2,731,525 + -0.2 2,731,533 - -0.2 2,731,553 + +0.4 2,731,553 + +0.0 2,731,665 - -0.6 2,731,666 - +0.6 2,731,682 - -1.4 2,731,694 - -1.2 2,731,718 - +1.4 2,731,722 - -1.5 2,731,725 + -0.2 2,731,730 + +0.7 2,731,730 + -0.1 2,731,738 - -0.0 2,731,743 + -1.0 2,731,745 + -0.2 2,731,800 - CCNA_02581 0.20 +0.1 2,731,822 - CCNA_02581 0.24 +0.6 2,731,846 + CCNA_02581 0.29 -0.7 2,731,864 - CCNA_02581 0.33 +0.2 2,731,867 + CCNA_02581 0.34 +0.7 2,731,880 - CCNA_02581 0.36 -0.0 2,731,898 + CCNA_02581 0.40 +1.0 2,731,931 + CCNA_02581 0.47 -0.5 2,731,975 - CCNA_02581 0.56 -0.9 2,732,012 + CCNA_02581 0.63 +0.7 2,732,014 + CCNA_02581 0.64 -0.0 2,732,020 - CCNA_02581 0.65 +0.3 2,732,042 - CCNA_02581 0.70 -0.2 2,732,064 - CCNA_02581 0.74 +3.1 2,732,067 + CCNA_02581 0.75 +0.2 2,732,102 - CCNA_02581 0.82 -0.1 2,732,137 + CCNA_02581 0.89 -2.0 2,732,182 - -0.9 2,732,216 + CCNA_02582 0.27 +0.2 2,732,253 + CCNA_02582 0.52 +0.1 2,732,254 - CCNA_02582 0.53 -0.6 2,732,274 - CCNA_02582 0.67 +0.4 2,732,276 - CCNA_02582 0.68 -2.6 2,732,276 - CCNA_02582 0.68 -0.4 2,732,293 + CCNA_02582 0.80 +0.1 2,732,356 - +1.0 2,732,371 + +0.2 2,732,379 - +0.1 2,732,459 + CCNA_02583 0.11 +0.1 2,732,467 - CCNA_02583 0.12 -0.5 2,732,467 - CCNA_02583 0.12 -0.1 2,732,467 - CCNA_02583 0.12 -0.1 2,732,467 - CCNA_02583 0.12 +1.1 2,732,558 + CCNA_02583 0.25 -0.8 2,732,570 - CCNA_02583 0.27 -0.1 2,732,675 - CCNA_02583 0.43 -0.7 2,732,703 - CCNA_02583 0.47 -0.9 2,732,712 + CCNA_02583 0.49 +1.5 2,732,773 - CCNA_02583 0.58 +0.7 2,732,790 + CCNA_02583 0.60 -0.8 2,732,808 - CCNA_02583 0.63 -1.8 2,732,813 + CCNA_02583 0.64 -0.0 2,732,817 + CCNA_02583 0.65 +0.2 2,732,823 + CCNA_02583 0.65 +0.2 2,732,832 - CCNA_02583 0.67 -0.5 2,732,867 - CCNA_02583 0.72 -0.6 2,732,880 - CCNA_02583 0.74 -1.7 2,732,881 + CCNA_02583 0.74 +0.1 2,732,889 - CCNA_02583 0.75 -2.0 2,732,914 + CCNA_02583 0.79 +0.0 2,732,967 + CCNA_02583 0.87 +0.0 2,732,975 - CCNA_02583 0.88 -1.2 2,733,003 - -1.7 2,733,003 - -0.1 2,733,014 + +0.0 2,733,019 + -0.2 2,733,019 + -0.2 2,733,027 - -0.8 2,733,027 - -1.7 2,733,027 - +0.1 2,733,027 - -0.7 2,733,052 - -2.3 2,733,080 + -0.0 2,733,099 + +0.6 2,733,107 - -0.4 2,733,177 - CCNA_03970 0.10 +0.1 2,733,217 + CCNA_03970 0.31 +0.2 2,733,239 + CCNA_03970 0.43 +0.6 2,733,301 + CCNA_03970 0.75 +0.0
Or see this region's nucleotide sequence