Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02429

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02426 and CCNA_02427 overlap by 4 nucleotidesCCNA_02427 and CCNA_02428 are separated by 7 nucleotidesCCNA_02428 and CCNA_02429 are separated by 96 nucleotidesCCNA_02429 and CCNA_02430 are separated by 2 nucleotidesCCNA_02430 and CCNA_02431 are separated by 21 nucleotides CCNA_02426: CCNA_02426 - ribonuclease, CafA family, at 2,569,003 to 2,570,064 _02426 CCNA_02427: CCNA_02427 - septum formation protein Maf, at 2,570,061 to 2,570,666 _02427 CCNA_02428: CCNA_02428 - translation initiation factor 1 (IF-1), at 2,570,674 to 2,570,892 _02428 CCNA_02429: CCNA_02429 - arsenate reductase, at 2,570,989 to 2,571,447 _02429 CCNA_02430: CCNA_02430 - conserved hypothetical cytosolic protein, at 2,571,450 to 2,571,929 _02430 CCNA_02431: CCNA_02431 - histidinol dehydrogenase, at 2,571,951 to 2,573,237 _02431 Position (kb) 2570 2571 2572Strain fitness (log2 ratio) -2 -1 0 1 2at 2570.010 kb on + strandat 2570.010 kb on + strandat 2570.018 kb on + strandat 2570.051 kb on + strandat 2570.057 kb on + strandat 2570.059 kb on - strandat 2570.068 kb on + strandat 2570.076 kb on - strandat 2570.096 kb on + strandat 2570.098 kb on + strandat 2570.101 kb on + strandat 2570.108 kb on - strandat 2570.130 kb on - strand, within CCNA_02427at 2570.177 kb on - strand, within CCNA_02427at 2570.191 kb on + strand, within CCNA_02427at 2570.191 kb on + strand, within CCNA_02427at 2570.210 kb on - strand, within CCNA_02427at 2570.224 kb on - strand, within CCNA_02427at 2570.226 kb on + strand, within CCNA_02427at 2570.236 kb on + strand, within CCNA_02427at 2570.261 kb on + strand, within CCNA_02427at 2570.309 kb on + strand, within CCNA_02427at 2570.319 kb on + strand, within CCNA_02427at 2570.319 kb on + strand, within CCNA_02427at 2570.319 kb on + strand, within CCNA_02427at 2570.319 kb on + strand, within CCNA_02427at 2570.327 kb on - strand, within CCNA_02427at 2570.359 kb on + strand, within CCNA_02427at 2570.386 kb on + strand, within CCNA_02427at 2570.386 kb on + strand, within CCNA_02427at 2570.388 kb on - strand, within CCNA_02427at 2570.394 kb on - strand, within CCNA_02427at 2570.396 kb on + strand, within CCNA_02427at 2570.443 kb on - strand, within CCNA_02427at 2570.469 kb on - strand, within CCNA_02427at 2570.572 kb on - strand, within CCNA_02427at 2570.616 kb on - strandat 2570.898 kb on - strandat 2570.986 kb on - strandat 2571.001 kb on + strandat 2571.033 kb on - strandat 2571.054 kb on - strand, within CCNA_02429at 2571.089 kb on - strand, within CCNA_02429at 2571.099 kb on + strand, within CCNA_02429at 2571.102 kb on - strand, within CCNA_02429at 2571.124 kb on - strand, within CCNA_02429at 2571.169 kb on - strand, within CCNA_02429at 2571.182 kb on - strand, within CCNA_02429at 2571.220 kb on - strand, within CCNA_02429at 2571.220 kb on - strand, within CCNA_02429at 2571.229 kb on + strand, within CCNA_02429at 2571.237 kb on - strand, within CCNA_02429at 2571.237 kb on - strand, within CCNA_02429at 2571.238 kb on - strand, within CCNA_02429at 2571.238 kb on - strand, within CCNA_02429at 2571.239 kb on - strand, within CCNA_02429at 2571.252 kb on + strand, within CCNA_02429at 2571.252 kb on + strand, within CCNA_02429at 2571.253 kb on + strand, within CCNA_02429at 2571.266 kb on - strand, within CCNA_02429at 2571.277 kb on - strand, within CCNA_02429at 2571.312 kb on + strand, within CCNA_02429at 2571.312 kb on + strand, within CCNA_02429at 2571.320 kb on - strand, within CCNA_02429at 2571.332 kb on - strand, within CCNA_02429at 2571.338 kb on + strand, within CCNA_02429at 2571.346 kb on - strand, within CCNA_02429at 2571.346 kb on - strand, within CCNA_02429at 2571.370 kb on - strand, within CCNA_02429at 2571.400 kb on + strand, within CCNA_02429at 2571.418 kb on - strandat 2571.431 kb on + strandat 2571.448 kb on + strandat 2571.469 kb on + strandat 2571.469 kb on + strandat 2571.469 kb on + strandat 2571.474 kb on + strandat 2571.474 kb on + strandat 2571.482 kb on - strandat 2571.482 kb on - strandat 2571.511 kb on + strand, within CCNA_02430at 2571.511 kb on + strand, within CCNA_02430at 2571.511 kb on + strand, within CCNA_02430at 2571.511 kb on + strand, within CCNA_02430at 2571.511 kb on + strand, within CCNA_02430at 2571.511 kb on + strand, within CCNA_02430at 2571.519 kb on - strand, within CCNA_02430at 2571.519 kb on - strand, within CCNA_02430at 2571.519 kb on - strand, within CCNA_02430at 2571.545 kb on + strand, within CCNA_02430at 2571.561 kb on + strand, within CCNA_02430at 2571.582 kb on + strand, within CCNA_02430at 2571.582 kb on + strand, within CCNA_02430at 2571.590 kb on - strand, within CCNA_02430at 2571.590 kb on - strand, within CCNA_02430at 2571.590 kb on - strand, within CCNA_02430at 2571.597 kb on - strand, within CCNA_02430at 2571.613 kb on - strand, within CCNA_02430at 2571.618 kb on - strand, within CCNA_02430at 2571.626 kb on + strand, within CCNA_02430at 2571.734 kb on + strand, within CCNA_02430at 2571.763 kb on - strand, within CCNA_02430at 2571.805 kb on + strand, within CCNA_02430at 2571.813 kb on - strand, within CCNA_02430at 2571.813 kb on - strand, within CCNA_02430at 2571.906 kb on - strandat 2571.906 kb on - strandat 2571.917 kb on + strandat 2571.950 kb on - strandat 2571.990 kb on - strandat 2571.990 kb on - strandat 2572.003 kb on + strandat 2572.003 kb on + strandat 2572.017 kb on - strandat 2572.017 kb on - strandat 2572.022 kb on - strandat 2572.111 kb on + strand, within CCNA_02431at 2572.176 kb on + strand, within CCNA_02431at 2572.266 kb on - strand, within CCNA_02431at 2572.274 kb on + strand, within CCNA_02431at 2572.282 kb on + strand, within CCNA_02431at 2572.282 kb on + strand, within CCNA_02431at 2572.315 kb on + strand, within CCNA_02431at 2572.317 kb on + strand, within CCNA_02431at 2572.341 kb on + strand, within CCNA_02431at 2572.341 kb on + strand, within CCNA_02431at 2572.363 kb on + strand, within CCNA_02431at 2572.364 kb on - strand, within CCNA_02431at 2572.375 kb on + strand, within CCNA_02431at 2572.375 kb on + strand, within CCNA_02431at 2572.375 kb on + strand, within CCNA_02431at 2572.375 kb on + strand, within CCNA_02431at 2572.375 kb on + strand, within CCNA_02431at 2572.383 kb on - strand, within CCNA_02431at 2572.383 kb on - strand, within CCNA_02431at 2572.383 kb on - strand, within CCNA_02431at 2572.383 kb on - strand, within CCNA_02431at 2572.390 kb on + strand, within CCNA_02431at 2572.398 kb on - strand, within CCNA_02431at 2572.442 kb on - strand, within CCNA_02431

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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2,570,010 + -0.4
2,570,010 + -1.1
2,570,018 + +0.1
2,570,051 + -0.6
2,570,057 + -0.4
2,570,059 - -0.8
2,570,068 + -0.5
2,570,076 - +1.0
2,570,096 + +0.1
2,570,098 + -0.8
2,570,101 + -0.3
2,570,108 - +0.2
2,570,130 - CCNA_02427 0.11 +0.7
2,570,177 - CCNA_02427 0.19 +0.8
2,570,191 + CCNA_02427 0.21 +0.3
2,570,191 + CCNA_02427 0.21 -0.4
2,570,210 - CCNA_02427 0.25 +0.5
2,570,224 - CCNA_02427 0.27 -0.3
2,570,226 + CCNA_02427 0.27 -0.1
2,570,236 + CCNA_02427 0.29 -1.2
2,570,261 + CCNA_02427 0.33 +1.6
2,570,309 + CCNA_02427 0.41 -0.6
2,570,319 + CCNA_02427 0.43 +0.5
2,570,319 + CCNA_02427 0.43 -0.5
2,570,319 + CCNA_02427 0.43 -0.4
2,570,319 + CCNA_02427 0.43 +0.4
2,570,327 - CCNA_02427 0.44 -1.1
2,570,359 + CCNA_02427 0.49 +0.4
2,570,386 + CCNA_02427 0.54 -1.4
2,570,386 + CCNA_02427 0.54 +0.6
2,570,388 - CCNA_02427 0.54 -0.9
2,570,394 - CCNA_02427 0.55 +0.3
2,570,396 + CCNA_02427 0.55 -0.9
2,570,443 - CCNA_02427 0.63 +0.5
2,570,469 - CCNA_02427 0.67 +0.0
2,570,572 - CCNA_02427 0.84 +1.0
2,570,616 - +0.4
2,570,898 - +0.5
2,570,986 - +0.3
2,571,001 + -0.2
2,571,033 - +0.6
2,571,054 - CCNA_02429 0.14 +0.0
2,571,089 - CCNA_02429 0.22 +2.2
2,571,099 + CCNA_02429 0.24 -0.5
2,571,102 - CCNA_02429 0.25 +0.2
2,571,124 - CCNA_02429 0.29 +0.1
2,571,169 - CCNA_02429 0.39 -0.5
2,571,182 - CCNA_02429 0.42 +0.4
2,571,220 - CCNA_02429 0.50 +0.3
2,571,220 - CCNA_02429 0.50 -0.8
2,571,229 + CCNA_02429 0.52 -0.7
2,571,237 - CCNA_02429 0.54 -0.3
2,571,237 - CCNA_02429 0.54 +0.1
2,571,238 - CCNA_02429 0.54 +0.9
2,571,238 - CCNA_02429 0.54 -0.1
2,571,239 - CCNA_02429 0.54 -1.2
2,571,252 + CCNA_02429 0.57 -0.0
2,571,252 + CCNA_02429 0.57 +0.0
2,571,253 + CCNA_02429 0.58 -2.2
2,571,266 - CCNA_02429 0.60 +1.3
2,571,277 - CCNA_02429 0.63 -0.2
2,571,312 + CCNA_02429 0.70 -0.5
2,571,312 + CCNA_02429 0.70 +0.1
2,571,320 - CCNA_02429 0.72 -0.5
2,571,332 - CCNA_02429 0.75 +0.3
2,571,338 + CCNA_02429 0.76 -0.4
2,571,346 - CCNA_02429 0.78 +0.7
2,571,346 - CCNA_02429 0.78 +1.3
2,571,370 - CCNA_02429 0.83 -0.4
2,571,400 + CCNA_02429 0.90 -2.0
2,571,418 - +0.2
2,571,431 + +0.9
2,571,448 + -0.4
2,571,469 + +0.7
2,571,469 + +1.9
2,571,469 + -0.8
2,571,474 + -1.3
2,571,474 + +0.6
2,571,482 - -0.4
2,571,482 - +0.1
2,571,511 + CCNA_02430 0.13 +0.5
2,571,511 + CCNA_02430 0.13 -1.2
2,571,511 + CCNA_02430 0.13 -1.0
2,571,511 + CCNA_02430 0.13 -0.8
2,571,511 + CCNA_02430 0.13 -0.9
2,571,511 + CCNA_02430 0.13 -0.4
2,571,519 - CCNA_02430 0.14 -0.0
2,571,519 - CCNA_02430 0.14 -0.7
2,571,519 - CCNA_02430 0.14 -0.7
2,571,545 + CCNA_02430 0.20 +0.6
2,571,561 + CCNA_02430 0.23 -1.2
2,571,582 + CCNA_02430 0.28 +0.2
2,571,582 + CCNA_02430 0.28 -0.2
2,571,590 - CCNA_02430 0.29 -0.0
2,571,590 - CCNA_02430 0.29 -0.3
2,571,590 - CCNA_02430 0.29 +0.4
2,571,597 - CCNA_02430 0.31 -0.0
2,571,613 - CCNA_02430 0.34 -0.5
2,571,618 - CCNA_02430 0.35 -0.6
2,571,626 + CCNA_02430 0.37 -0.6
2,571,734 + CCNA_02430 0.59 -0.6
2,571,763 - CCNA_02430 0.65 -0.9
2,571,805 + CCNA_02430 0.74 +0.1
2,571,813 - CCNA_02430 0.76 -0.1
2,571,813 - CCNA_02430 0.76 +1.4
2,571,906 - +0.5
2,571,906 - +0.3
2,571,917 + -1.2
2,571,950 - +0.3
2,571,990 - +0.4
2,571,990 - +0.6
2,572,003 + -0.7
2,572,003 + -1.7
2,572,017 - +0.2
2,572,017 - -0.1
2,572,022 - -0.4
2,572,111 + CCNA_02431 0.12 -0.6
2,572,176 + CCNA_02431 0.17 -0.1
2,572,266 - CCNA_02431 0.24 +0.4
2,572,274 + CCNA_02431 0.25 -1.3
2,572,282 + CCNA_02431 0.26 +0.1
2,572,282 + CCNA_02431 0.26 -0.7
2,572,315 + CCNA_02431 0.28 -2.7
2,572,317 + CCNA_02431 0.28 -0.3
2,572,341 + CCNA_02431 0.30 +0.1
2,572,341 + CCNA_02431 0.30 -0.0
2,572,363 + CCNA_02431 0.32 -1.9
2,572,364 - CCNA_02431 0.32 +0.5
2,572,375 + CCNA_02431 0.33 -0.2
2,572,375 + CCNA_02431 0.33 -0.2
2,572,375 + CCNA_02431 0.33 +0.3
2,572,375 + CCNA_02431 0.33 -0.6
2,572,375 + CCNA_02431 0.33 +0.9
2,572,383 - CCNA_02431 0.34 -0.3
2,572,383 - CCNA_02431 0.34 -0.3
2,572,383 - CCNA_02431 0.34 +0.2
2,572,383 - CCNA_02431 0.34 -0.1
2,572,390 + CCNA_02431 0.34 -1.1
2,572,398 - CCNA_02431 0.35 +0.0
2,572,442 - CCNA_02431 0.38 +0.2

Or see this region's nucleotide sequence