Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02373 and CCNA_02374 overlap by 7 nucleotides CCNA_02374 and CCNA_02375 are separated by 58 nucleotides CCNA_02375 and CCNA_02376 overlap by 12 nucleotides CCNA_02376 and CCNA_02377 overlap by 4 nucleotides CCNA_02377 and CCNA_R0055 are separated by 225 nucleotides CCNA_R0055 and CCNA_02378 are separated by 149 nucleotides
CCNA_02373: CCNA_02373 - transposase, at 2,518,748 to 2,519,674
_02373
CCNA_02374: CCNA_02374 - transposase, at 2,519,668 to 2,519,934
_02374
CCNA_02375: CCNA_02375 - hypothetical protein, at 2,519,993 to 2,520,256
_02375
CCNA_02376: CCNA_02376 - hypothetical protein, at 2,520,245 to 2,520,523
_02376
CCNA_02377: CCNA_02377 - hypothetical protein, at 2,520,520 to 2,521,242
_02377
CCNA_R0055: CCNA_R0055 - tRNA-Ile, at 2,521,468 to 2,521,543
_R0055
CCNA_02378: CCNA_02378 - SIMPL family protein, at 2,521,693 to 2,522,439
_02378
Position (kb)
2520
2521
2522 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2519.949 kb on + strand at 2519.957 kb on + strand at 2520.068 kb on + strand, within CCNA_02375 at 2520.100 kb on - strand, within CCNA_02375 at 2520.109 kb on - strand, within CCNA_02375 at 2520.139 kb on + strand, within CCNA_02375 at 2520.147 kb on - strand, within CCNA_02375 at 2520.149 kb on + strand, within CCNA_02375 at 2520.157 kb on - strand, within CCNA_02375 at 2520.167 kb on + strand, within CCNA_02375 at 2520.167 kb on + strand, within CCNA_02375 at 2520.223 kb on + strand, within CCNA_02375 at 2520.231 kb on - strand at 2520.231 kb on - strand at 2520.231 kb on - strand at 2520.259 kb on - strand at 2520.259 kb on - strand at 2520.259 kb on - strand at 2520.259 kb on - strand at 2520.301 kb on - strand, within CCNA_02376 at 2520.323 kb on + strand, within CCNA_02376 at 2520.479 kb on - strand, within CCNA_02376 at 2520.483 kb on + strand, within CCNA_02376 at 2520.500 kb on + strand at 2520.525 kb on - strand at 2520.525 kb on - strand at 2520.600 kb on + strand, within CCNA_02377 at 2520.602 kb on - strand, within CCNA_02377 at 2520.603 kb on - strand, within CCNA_02377 at 2520.603 kb on - strand, within CCNA_02377 at 2520.651 kb on + strand, within CCNA_02377 at 2520.651 kb on + strand, within CCNA_02377 at 2520.656 kb on + strand, within CCNA_02377 at 2520.666 kb on + strand, within CCNA_02377 at 2520.708 kb on + strand, within CCNA_02377 at 2520.735 kb on - strand, within CCNA_02377 at 2520.735 kb on - strand, within CCNA_02377 at 2520.776 kb on - strand, within CCNA_02377 at 2520.901 kb on - strand, within CCNA_02377 at 2520.970 kb on - strand, within CCNA_02377 at 2520.987 kb on - strand, within CCNA_02377 at 2520.989 kb on + strand, within CCNA_02377 at 2521.043 kb on + strand, within CCNA_02377 at 2521.043 kb on + strand, within CCNA_02377 at 2521.081 kb on + strand, within CCNA_02377 at 2521.089 kb on - strand, within CCNA_02377 at 2521.104 kb on + strand, within CCNA_02377 at 2521.228 kb on + strand at 2521.302 kb on + strand at 2521.385 kb on + strand at 2521.386 kb on - strand at 2521.393 kb on - strand at 2521.587 kb on - strand at 2521.600 kb on + strand at 2521.607 kb on + strand at 2521.621 kb on - strand at 2521.621 kb on - strand at 2521.621 kb on - strand at 2521.626 kb on - strand at 2521.646 kb on - strand at 2521.673 kb on - strand at 2521.703 kb on - strand at 2521.743 kb on + strand at 2521.801 kb on + strand, within CCNA_02378 at 2521.809 kb on - strand, within CCNA_02378 at 2521.816 kb on + strand, within CCNA_02378 at 2521.824 kb on - strand, within CCNA_02378 at 2521.825 kb on - strand, within CCNA_02378 at 2521.825 kb on - strand, within CCNA_02378 at 2521.882 kb on + strand, within CCNA_02378 at 2521.890 kb on - strand, within CCNA_02378 at 2521.955 kb on + strand, within CCNA_02378 at 2521.955 kb on + strand, within CCNA_02378 at 2521.959 kb on + strand, within CCNA_02378 at 2521.963 kb on - strand, within CCNA_02378 at 2522.024 kb on + strand, within CCNA_02378 at 2522.024 kb on + strand, within CCNA_02378 at 2522.024 kb on + strand, within CCNA_02378 at 2522.050 kb on - strand, within CCNA_02378 at 2522.065 kb on + strand, within CCNA_02378 at 2522.066 kb on + strand, within CCNA_02378 at 2522.081 kb on + strand, within CCNA_02378 at 2522.123 kb on + strand, within CCNA_02378 at 2522.142 kb on + strand, within CCNA_02378 at 2522.165 kb on + strand, within CCNA_02378 at 2522.165 kb on + strand, within CCNA_02378 at 2522.165 kb on + strand, within CCNA_02378 at 2522.165 kb on + strand, within CCNA_02378 at 2522.208 kb on + strand, within CCNA_02378 at 2522.208 kb on + strand, within CCNA_02378 at 2522.216 kb on - strand, within CCNA_02378 at 2522.232 kb on + strand, within CCNA_02378 at 2522.232 kb on + strand, within CCNA_02378 at 2522.232 kb on + strand, within CCNA_02378 at 2522.240 kb on - strand, within CCNA_02378 at 2522.240 kb on - strand, within CCNA_02378
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,519,949 + -1.8 2,519,957 + +0.1 2,520,068 + CCNA_02375 0.28 -0.6 2,520,100 - CCNA_02375 0.41 +0.5 2,520,109 - CCNA_02375 0.44 -0.1 2,520,139 + CCNA_02375 0.55 -0.5 2,520,147 - CCNA_02375 0.58 -0.9 2,520,149 + CCNA_02375 0.59 -2.7 2,520,157 - CCNA_02375 0.62 -0.9 2,520,167 + CCNA_02375 0.66 -0.8 2,520,167 + CCNA_02375 0.66 -0.7 2,520,223 + CCNA_02375 0.87 -1.3 2,520,231 - +0.3 2,520,231 - +0.9 2,520,231 - +0.6 2,520,259 - -0.4 2,520,259 - -0.4 2,520,259 - +0.0 2,520,259 - -0.7 2,520,301 - CCNA_02376 0.20 -0.0 2,520,323 + CCNA_02376 0.28 -0.4 2,520,479 - CCNA_02376 0.84 -1.0 2,520,483 + CCNA_02376 0.85 +0.3 2,520,500 + -0.2 2,520,525 - -0.9 2,520,525 - +0.9 2,520,600 + CCNA_02377 0.11 +0.3 2,520,602 - CCNA_02377 0.11 -0.3 2,520,603 - CCNA_02377 0.11 -0.2 2,520,603 - CCNA_02377 0.11 -0.4 2,520,651 + CCNA_02377 0.18 -1.4 2,520,651 + CCNA_02377 0.18 -0.6 2,520,656 + CCNA_02377 0.19 +0.7 2,520,666 + CCNA_02377 0.20 -1.4 2,520,708 + CCNA_02377 0.26 -0.7 2,520,735 - CCNA_02377 0.30 -0.1 2,520,735 - CCNA_02377 0.30 +0.1 2,520,776 - CCNA_02377 0.35 -0.6 2,520,901 - CCNA_02377 0.53 +0.3 2,520,970 - CCNA_02377 0.62 +0.4 2,520,987 - CCNA_02377 0.65 -0.2 2,520,989 + CCNA_02377 0.65 -1.1 2,521,043 + CCNA_02377 0.72 -0.5 2,521,043 + CCNA_02377 0.72 -0.4 2,521,081 + CCNA_02377 0.78 -1.9 2,521,089 - CCNA_02377 0.79 +0.4 2,521,104 + CCNA_02377 0.81 -2.7 2,521,228 + +0.4 2,521,302 + -2.7 2,521,385 + -1.5 2,521,386 - +1.1 2,521,393 - -0.3 2,521,587 - +0.6 2,521,600 + -0.4 2,521,607 + +0.5 2,521,621 - +0.0 2,521,621 - -0.2 2,521,621 - -0.0 2,521,626 - +1.2 2,521,646 - -1.3 2,521,673 - +0.3 2,521,703 - +0.5 2,521,743 + +1.6 2,521,801 + CCNA_02378 0.14 -1.0 2,521,809 - CCNA_02378 0.16 +1.5 2,521,816 + CCNA_02378 0.16 +1.1 2,521,824 - CCNA_02378 0.18 +0.2 2,521,825 - CCNA_02378 0.18 -0.2 2,521,825 - CCNA_02378 0.18 -1.2 2,521,882 + CCNA_02378 0.25 -0.5 2,521,890 - CCNA_02378 0.26 +0.4 2,521,955 + CCNA_02378 0.35 +0.5 2,521,955 + CCNA_02378 0.35 +0.1 2,521,959 + CCNA_02378 0.36 -0.6 2,521,963 - CCNA_02378 0.36 -0.2 2,522,024 + CCNA_02378 0.44 +0.1 2,522,024 + CCNA_02378 0.44 +0.0 2,522,024 + CCNA_02378 0.44 +0.0 2,522,050 - CCNA_02378 0.48 -0.1 2,522,065 + CCNA_02378 0.50 -0.3 2,522,066 + CCNA_02378 0.50 -0.3 2,522,081 + CCNA_02378 0.52 -0.1 2,522,123 + CCNA_02378 0.58 +0.7 2,522,142 + CCNA_02378 0.60 +0.2 2,522,165 + CCNA_02378 0.63 -1.1 2,522,165 + CCNA_02378 0.63 -0.2 2,522,165 + CCNA_02378 0.63 -0.3 2,522,165 + CCNA_02378 0.63 -0.4 2,522,208 + CCNA_02378 0.69 -0.9 2,522,208 + CCNA_02378 0.69 -0.5 2,522,216 - CCNA_02378 0.70 -0.5 2,522,232 + CCNA_02378 0.72 +0.7 2,522,232 + CCNA_02378 0.72 +0.2 2,522,232 + CCNA_02378 0.72 -0.1 2,522,240 - CCNA_02378 0.73 +2.9 2,522,240 - CCNA_02378 0.73 +0.3
Or see this region's nucleotide sequence