Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02370 and CCNA_02371 are separated by 186 nucleotides CCNA_02371 and CCNA_02372 are separated by 26 nucleotides CCNA_02372 and CCNA_02373 overlap by 29 nucleotides
CCNA_02370: CCNA_02370 - TonB-dependent maltose outer membrane transporter malA, at 2,514,140 to 2,516,905
_02370
CCNA_02371: CCNA_02371 - tryptophan halogenase superfamily protein, at 2,517,092 to 2,518,606
_02371
CCNA_02372: CCNA_02372 - hypothetical protein, at 2,518,633 to 2,518,776
_02372
CCNA_02373: CCNA_02373 - transposase, at 2,518,748 to 2,519,674
_02373
Position (kb)
2517
2518
2519 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2516.143 kb on - strand, within CCNA_02370 at 2516.167 kb on + strand, within CCNA_02370 at 2516.187 kb on + strand, within CCNA_02370 at 2516.187 kb on + strand, within CCNA_02370 at 2516.200 kb on + strand, within CCNA_02370 at 2516.225 kb on - strand, within CCNA_02370 at 2516.273 kb on + strand, within CCNA_02370 at 2516.278 kb on + strand, within CCNA_02370 at 2516.278 kb on - strand, within CCNA_02370 at 2516.281 kb on - strand, within CCNA_02370 at 2516.350 kb on + strand, within CCNA_02370 at 2516.350 kb on + strand, within CCNA_02370 at 2516.350 kb on + strand, within CCNA_02370 at 2516.399 kb on - strand, within CCNA_02370 at 2516.403 kb on - strand, within CCNA_02370 at 2516.436 kb on + strand, within CCNA_02370 at 2516.436 kb on + strand, within CCNA_02370 at 2516.436 kb on + strand, within CCNA_02370 at 2516.436 kb on + strand, within CCNA_02370 at 2516.478 kb on - strand, within CCNA_02370 at 2516.488 kb on - strand, within CCNA_02370 at 2516.490 kb on + strand, within CCNA_02370 at 2516.495 kb on + strand, within CCNA_02370 at 2516.524 kb on + strand, within CCNA_02370 at 2516.524 kb on - strand, within CCNA_02370 at 2516.532 kb on - strand, within CCNA_02370 at 2516.554 kb on + strand, within CCNA_02370 at 2516.555 kb on - strand, within CCNA_02370 at 2516.560 kb on - strand, within CCNA_02370 at 2516.563 kb on - strand, within CCNA_02370 at 2516.575 kb on + strand, within CCNA_02370 at 2516.575 kb on + strand, within CCNA_02370 at 2516.575 kb on + strand, within CCNA_02370 at 2516.575 kb on + strand, within CCNA_02370 at 2516.583 kb on - strand, within CCNA_02370 at 2516.583 kb on - strand, within CCNA_02370 at 2516.583 kb on - strand, within CCNA_02370 at 2516.583 kb on - strand, within CCNA_02370 at 2516.583 kb on - strand, within CCNA_02370 at 2516.583 kb on - strand, within CCNA_02370 at 2516.585 kb on + strand, within CCNA_02370 at 2516.593 kb on - strand, within CCNA_02370 at 2516.656 kb on + strand at 2516.683 kb on - strand at 2516.683 kb on - strand at 2516.713 kb on - strand at 2516.728 kb on - strand at 2516.769 kb on + strand at 2516.796 kb on - strand at 2516.796 kb on - strand at 2516.812 kb on + strand at 2516.812 kb on + strand at 2516.812 kb on + strand at 2516.827 kb on - strand at 2516.926 kb on + strand at 2516.928 kb on + strand at 2516.934 kb on - strand at 2516.974 kb on + strand at 2516.974 kb on + strand at 2516.974 kb on + strand at 2516.974 kb on + strand at 2516.974 kb on + strand at 2516.982 kb on - strand at 2516.982 kb on - strand at 2516.982 kb on - strand at 2517.060 kb on + strand at 2517.068 kb on - strand at 2517.106 kb on + strand at 2517.114 kb on - strand at 2517.115 kb on - strand at 2517.131 kb on - strand at 2517.151 kb on - strand at 2517.161 kb on - strand at 2517.174 kb on + strand at 2517.174 kb on + strand at 2517.182 kb on - strand at 2517.207 kb on + strand at 2517.207 kb on + strand at 2517.248 kb on + strand, within CCNA_02371 at 2517.374 kb on - strand, within CCNA_02371 at 2517.382 kb on - strand, within CCNA_02371 at 2517.389 kb on - strand, within CCNA_02371 at 2517.434 kb on - strand, within CCNA_02371 at 2517.466 kb on - strand, within CCNA_02371 at 2517.502 kb on + strand, within CCNA_02371 at 2517.551 kb on - strand, within CCNA_02371 at 2517.556 kb on + strand, within CCNA_02371 at 2517.564 kb on - strand, within CCNA_02371 at 2517.591 kb on + strand, within CCNA_02371 at 2517.598 kb on - strand, within CCNA_02371 at 2517.598 kb on - strand, within CCNA_02371 at 2517.599 kb on - strand, within CCNA_02371 at 2517.606 kb on - strand, within CCNA_02371 at 2517.654 kb on + strand, within CCNA_02371 at 2517.654 kb on + strand, within CCNA_02371 at 2517.689 kb on + strand, within CCNA_02371 at 2517.689 kb on + strand, within CCNA_02371 at 2517.689 kb on + strand, within CCNA_02371 at 2517.698 kb on - strand, within CCNA_02371 at 2517.741 kb on + strand, within CCNA_02371 at 2517.750 kb on + strand, within CCNA_02371 at 2517.750 kb on + strand, within CCNA_02371 at 2517.758 kb on - strand, within CCNA_02371 at 2517.773 kb on + strand, within CCNA_02371 at 2517.773 kb on + strand, within CCNA_02371 at 2517.794 kb on - strand, within CCNA_02371 at 2517.801 kb on - strand, within CCNA_02371 at 2517.820 kb on - strand, within CCNA_02371 at 2517.863 kb on + strand, within CCNA_02371 at 2517.863 kb on + strand, within CCNA_02371 at 2517.864 kb on - strand, within CCNA_02371 at 2517.865 kb on - strand, within CCNA_02371 at 2517.871 kb on - strand, within CCNA_02371 at 2517.871 kb on - strand, within CCNA_02371 at 2517.871 kb on - strand, within CCNA_02371 at 2517.883 kb on + strand, within CCNA_02371 at 2517.949 kb on - strand, within CCNA_02371 at 2517.981 kb on - strand, within CCNA_02371 at 2518.083 kb on - strand, within CCNA_02371 at 2518.088 kb on + strand, within CCNA_02371 at 2518.101 kb on - strand, within CCNA_02371 at 2518.123 kb on + strand, within CCNA_02371 at 2518.128 kb on + strand, within CCNA_02371 at 2518.136 kb on - strand, within CCNA_02371 at 2518.147 kb on - strand, within CCNA_02371 at 2518.149 kb on + strand, within CCNA_02371 at 2518.156 kb on - strand, within CCNA_02371 at 2518.156 kb on - strand, within CCNA_02371 at 2518.193 kb on - strand, within CCNA_02371 at 2518.193 kb on - strand, within CCNA_02371 at 2518.226 kb on + strand, within CCNA_02371 at 2518.226 kb on + strand, within CCNA_02371 at 2518.226 kb on + strand, within CCNA_02371 at 2518.226 kb on + strand, within CCNA_02371 at 2518.234 kb on - strand, within CCNA_02371 at 2518.234 kb on - strand, within CCNA_02371 at 2518.267 kb on + strand, within CCNA_02371 at 2518.275 kb on - strand, within CCNA_02371 at 2518.287 kb on + strand, within CCNA_02371 at 2518.325 kb on - strand, within CCNA_02371 at 2518.335 kb on + strand, within CCNA_02371 at 2518.336 kb on - strand, within CCNA_02371 at 2518.343 kb on - strand, within CCNA_02371 at 2518.359 kb on + strand, within CCNA_02371 at 2518.399 kb on + strand, within CCNA_02371 at 2518.448 kb on - strand, within CCNA_02371 at 2518.448 kb on - strand, within CCNA_02371 at 2518.472 kb on + strand at 2518.600 kb on + strand at 2518.626 kb on + strand at 2518.648 kb on - strand, within CCNA_02372 at 2518.648 kb on - strand, within CCNA_02372 at 2518.686 kb on - strand, within CCNA_02372 at 2518.687 kb on + strand, within CCNA_02372 at 2518.695 kb on - strand, within CCNA_02372 at 2518.702 kb on + strand, within CCNA_02372 at 2518.734 kb on - strand, within CCNA_02372 at 2518.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,516,143 - CCNA_02370 0.72 +0.4 2,516,167 + CCNA_02370 0.73 +0.1 2,516,187 + CCNA_02370 0.74 -0.3 2,516,187 + CCNA_02370 0.74 +0.1 2,516,200 + CCNA_02370 0.74 -1.4 2,516,225 - CCNA_02370 0.75 +2.0 2,516,273 + CCNA_02370 0.77 -1.3 2,516,278 + CCNA_02370 0.77 -1.4 2,516,278 - CCNA_02370 0.77 -0.7 2,516,281 - CCNA_02370 0.77 -0.1 2,516,350 + CCNA_02370 0.80 -0.9 2,516,350 + CCNA_02370 0.80 -1.4 2,516,350 + CCNA_02370 0.80 -2.3 2,516,399 - CCNA_02370 0.82 -0.1 2,516,403 - CCNA_02370 0.82 -2.0 2,516,436 + CCNA_02370 0.83 +0.2 2,516,436 + CCNA_02370 0.83 -1.6 2,516,436 + CCNA_02370 0.83 -0.6 2,516,436 + CCNA_02370 0.83 -2.3 2,516,478 - CCNA_02370 0.85 -1.8 2,516,488 - CCNA_02370 0.85 +0.7 2,516,490 + CCNA_02370 0.85 +0.2 2,516,495 + CCNA_02370 0.85 -1.1 2,516,524 + CCNA_02370 0.86 -0.6 2,516,524 - CCNA_02370 0.86 +0.3 2,516,532 - CCNA_02370 0.86 +0.5 2,516,554 + CCNA_02370 0.87 -0.9 2,516,555 - CCNA_02370 0.87 +0.6 2,516,560 - CCNA_02370 0.87 -0.5 2,516,563 - CCNA_02370 0.88 -0.0 2,516,575 + CCNA_02370 0.88 -2.3 2,516,575 + CCNA_02370 0.88 -0.2 2,516,575 + CCNA_02370 0.88 +0.6 2,516,575 + CCNA_02370 0.88 -0.1 2,516,583 - CCNA_02370 0.88 +1.9 2,516,583 - CCNA_02370 0.88 -0.5 2,516,583 - CCNA_02370 0.88 +0.1 2,516,583 - CCNA_02370 0.88 +0.7 2,516,583 - CCNA_02370 0.88 -0.1 2,516,583 - CCNA_02370 0.88 +0.1 2,516,585 + CCNA_02370 0.88 +0.6 2,516,593 - CCNA_02370 0.89 +1.2 2,516,656 + +1.6 2,516,683 - +0.2 2,516,683 - +0.6 2,516,713 - -0.0 2,516,728 - -2.3 2,516,769 + -0.3 2,516,796 - -0.2 2,516,796 - +0.1 2,516,812 + +0.0 2,516,812 + +0.7 2,516,812 + +0.6 2,516,827 - -0.3 2,516,926 + +1.0 2,516,928 + +0.3 2,516,934 - +0.3 2,516,974 + -0.5 2,516,974 + -1.8 2,516,974 + +0.1 2,516,974 + -1.6 2,516,974 + +0.2 2,516,982 - -0.4 2,516,982 - -0.2 2,516,982 - -0.4 2,517,060 + +0.0 2,517,068 - -0.6 2,517,106 + -0.4 2,517,114 - -0.4 2,517,115 - +0.0 2,517,131 - -0.8 2,517,151 - +1.1 2,517,161 - +0.3 2,517,174 + -0.3 2,517,174 + -0.1 2,517,182 - -0.6 2,517,207 + +0.5 2,517,207 + +1.3 2,517,248 + CCNA_02371 0.10 -1.0 2,517,374 - CCNA_02371 0.19 -0.2 2,517,382 - CCNA_02371 0.19 -0.2 2,517,389 - CCNA_02371 0.20 -2.4 2,517,434 - CCNA_02371 0.23 -1.5 2,517,466 - CCNA_02371 0.25 -0.7 2,517,502 + CCNA_02371 0.27 +0.1 2,517,551 - CCNA_02371 0.30 -0.7 2,517,556 + CCNA_02371 0.31 -0.6 2,517,564 - CCNA_02371 0.31 -0.7 2,517,591 + CCNA_02371 0.33 -0.6 2,517,598 - CCNA_02371 0.33 +0.2 2,517,598 - CCNA_02371 0.33 +0.4 2,517,599 - CCNA_02371 0.33 -1.2 2,517,606 - CCNA_02371 0.34 +1.0 2,517,654 + CCNA_02371 0.37 +2.3 2,517,654 + CCNA_02371 0.37 +0.1 2,517,689 + CCNA_02371 0.39 -0.8 2,517,689 + CCNA_02371 0.39 -0.0 2,517,689 + CCNA_02371 0.39 +0.5 2,517,698 - CCNA_02371 0.40 +0.3 2,517,741 + CCNA_02371 0.43 -0.4 2,517,750 + CCNA_02371 0.43 -0.9 2,517,750 + CCNA_02371 0.43 -0.4 2,517,758 - CCNA_02371 0.44 -0.8 2,517,773 + CCNA_02371 0.45 +0.3 2,517,773 + CCNA_02371 0.45 +0.9 2,517,794 - CCNA_02371 0.46 -0.3 2,517,801 - CCNA_02371 0.47 +0.6 2,517,820 - CCNA_02371 0.48 +1.1 2,517,863 + CCNA_02371 0.51 -0.8 2,517,863 + CCNA_02371 0.51 +0.9 2,517,864 - CCNA_02371 0.51 -0.3 2,517,865 - CCNA_02371 0.51 +0.7 2,517,871 - CCNA_02371 0.51 -1.0 2,517,871 - CCNA_02371 0.51 +0.1 2,517,871 - CCNA_02371 0.51 -0.2 2,517,883 + CCNA_02371 0.52 -0.4 2,517,949 - CCNA_02371 0.57 -0.5 2,517,981 - CCNA_02371 0.59 -0.8 2,518,083 - CCNA_02371 0.65 -0.3 2,518,088 + CCNA_02371 0.66 -1.9 2,518,101 - CCNA_02371 0.67 -0.0 2,518,123 + CCNA_02371 0.68 -0.1 2,518,128 + CCNA_02371 0.68 -0.9 2,518,136 - CCNA_02371 0.69 +1.5 2,518,147 - CCNA_02371 0.70 -2.8 2,518,149 + CCNA_02371 0.70 -0.1 2,518,156 - CCNA_02371 0.70 -0.2 2,518,156 - CCNA_02371 0.70 +0.4 2,518,193 - CCNA_02371 0.73 -0.6 2,518,193 - CCNA_02371 0.73 +0.9 2,518,226 + CCNA_02371 0.75 -0.9 2,518,226 + CCNA_02371 0.75 +0.3 2,518,226 + CCNA_02371 0.75 +0.1 2,518,226 + CCNA_02371 0.75 -2.3 2,518,234 - CCNA_02371 0.75 -0.2 2,518,234 - CCNA_02371 0.75 +1.0 2,518,267 + CCNA_02371 0.78 -0.3 2,518,275 - CCNA_02371 0.78 -0.0 2,518,287 + CCNA_02371 0.79 +0.3 2,518,325 - CCNA_02371 0.81 +0.2 2,518,335 + CCNA_02371 0.82 -1.3 2,518,336 - CCNA_02371 0.82 -0.1 2,518,343 - CCNA_02371 0.83 +0.0 2,518,359 + CCNA_02371 0.84 -0.0 2,518,399 + CCNA_02371 0.86 -1.1 2,518,448 - CCNA_02371 0.90 -0.1 2,518,448 - CCNA_02371 0.90 +0.1 2,518,472 + -0.1 2,518,600 + +2.0 2,518,626 + -2.7 2,518,648 - CCNA_02372 0.10 -0.3 2,518,648 - CCNA_02372 0.10 +0.3 2,518,686 - CCNA_02372 0.37 +0.7 2,518,687 + CCNA_02372 0.38 -0.5 2,518,695 - CCNA_02372 0.43 +0.1 2,518,702 + CCNA_02372 0.48 -1.2 2,518,734 - CCNA_02372 0.70 +0.7 2,518,763 - +0.7
Or see this region's nucleotide sequence