Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02343 and CCNA_02344 are separated by 92 nucleotides CCNA_02344 and CCNA_02345 are separated by 160 nucleotides CCNA_02345 and CCNA_02346 overlap by 4 nucleotides
CCNA_02343: CCNA_02343 - hypothetical protein with pentapeptide repeats, at 2,482,784 to 2,484,043
_02343
CCNA_02344: CCNA_02344 - phosphoglycerate mutase, at 2,484,136 to 2,484,849
_02344
CCNA_02345: CCNA_02345 - hypothetical protein, at 2,485,010 to 2,485,225
_02345
CCNA_02346: CCNA_02346 - arabinose-5-phosphate isomerase, at 2,485,222 to 2,486,178
_02346
Position (kb)
2484
2485 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2483.138 kb on - strand, within CCNA_02343 at 2483.144 kb on + strand, within CCNA_02343 at 2483.150 kb on - strand, within CCNA_02343 at 2483.150 kb on - strand, within CCNA_02343 at 2483.187 kb on - strand, within CCNA_02343 at 2483.187 kb on - strand, within CCNA_02343 at 2483.194 kb on - strand, within CCNA_02343 at 2483.194 kb on - strand, within CCNA_02343 at 2483.222 kb on + strand, within CCNA_02343 at 2483.230 kb on - strand, within CCNA_02343 at 2483.230 kb on - strand, within CCNA_02343 at 2483.302 kb on + strand, within CCNA_02343 at 2483.302 kb on + strand, within CCNA_02343 at 2483.302 kb on + strand, within CCNA_02343 at 2483.310 kb on - strand, within CCNA_02343 at 2483.310 kb on - strand, within CCNA_02343 at 2483.310 kb on - strand, within CCNA_02343 at 2483.358 kb on + strand, within CCNA_02343 at 2483.375 kb on - strand, within CCNA_02343 at 2483.375 kb on - strand, within CCNA_02343 at 2483.385 kb on - strand, within CCNA_02343 at 2483.395 kb on + strand, within CCNA_02343 at 2483.400 kb on + strand, within CCNA_02343 at 2483.400 kb on + strand, within CCNA_02343 at 2483.403 kb on - strand, within CCNA_02343 at 2483.405 kb on + strand, within CCNA_02343 at 2483.405 kb on + strand, within CCNA_02343 at 2483.408 kb on - strand, within CCNA_02343 at 2483.410 kb on + strand, within CCNA_02343 at 2483.410 kb on + strand, within CCNA_02343 at 2483.410 kb on + strand, within CCNA_02343 at 2483.413 kb on - strand, within CCNA_02343 at 2483.445 kb on + strand, within CCNA_02343 at 2483.463 kb on - strand, within CCNA_02343 at 2483.487 kb on - strand, within CCNA_02343 at 2483.487 kb on - strand, within CCNA_02343 at 2483.492 kb on - strand, within CCNA_02343 at 2483.498 kb on - strand, within CCNA_02343 at 2483.518 kb on - strand, within CCNA_02343 at 2483.518 kb on - strand, within CCNA_02343 at 2483.518 kb on - strand, within CCNA_02343 at 2483.518 kb on - strand, within CCNA_02343 at 2483.518 kb on - strand, within CCNA_02343 at 2483.518 kb on - strand, within CCNA_02343 at 2483.525 kb on + strand, within CCNA_02343 at 2483.590 kb on + strand, within CCNA_02343 at 2483.590 kb on + strand, within CCNA_02343 at 2483.590 kb on + strand, within CCNA_02343 at 2483.590 kb on + strand, within CCNA_02343 at 2483.609 kb on + strand, within CCNA_02343 at 2483.651 kb on - strand, within CCNA_02343 at 2483.688 kb on + strand, within CCNA_02343 at 2483.696 kb on - strand, within CCNA_02343 at 2483.696 kb on - strand, within CCNA_02343 at 2483.698 kb on + strand, within CCNA_02343 at 2483.706 kb on - strand, within CCNA_02343 at 2483.708 kb on + strand, within CCNA_02343 at 2483.713 kb on + strand, within CCNA_02343 at 2483.716 kb on - strand, within CCNA_02343 at 2483.716 kb on - strand, within CCNA_02343 at 2483.721 kb on - strand, within CCNA_02343 at 2483.721 kb on - strand, within CCNA_02343 at 2483.728 kb on + strand, within CCNA_02343 at 2483.728 kb on + strand, within CCNA_02343 at 2483.728 kb on + strand, within CCNA_02343 at 2483.738 kb on + strand, within CCNA_02343 at 2483.738 kb on + strand, within CCNA_02343 at 2483.738 kb on + strand, within CCNA_02343 at 2483.738 kb on + strand, within CCNA_02343 at 2483.743 kb on + strand, within CCNA_02343 at 2483.743 kb on + strand, within CCNA_02343 at 2483.751 kb on - strand, within CCNA_02343 at 2483.804 kb on - strand, within CCNA_02343 at 2483.811 kb on - strand, within CCNA_02343 at 2483.833 kb on + strand, within CCNA_02343 at 2483.833 kb on + strand, within CCNA_02343 at 2483.841 kb on - strand, within CCNA_02343 at 2483.899 kb on + strand, within CCNA_02343 at 2483.942 kb on + strand at 2483.954 kb on + strand at 2483.969 kb on - strand at 2483.971 kb on - strand at 2483.988 kb on + strand at 2484.052 kb on + strand at 2484.074 kb on + strand at 2484.074 kb on + strand at 2484.082 kb on - strand at 2484.133 kb on + strand at 2484.155 kb on + strand at 2484.313 kb on - strand, within CCNA_02344 at 2484.332 kb on + strand, within CCNA_02344 at 2484.426 kb on - strand, within CCNA_02344 at 2484.559 kb on + strand, within CCNA_02344 at 2484.631 kb on - strand, within CCNA_02344 at 2484.673 kb on + strand, within CCNA_02344 at 2484.768 kb on + strand, within CCNA_02344 at 2484.813 kb on + strand at 2484.886 kb on + strand at 2484.886 kb on + strand at 2484.886 kb on + strand at 2484.886 kb on + strand at 2484.894 kb on - strand at 2484.954 kb on - strand at 2484.955 kb on + strand at 2484.959 kb on + strand at 2484.967 kb on - strand at 2484.967 kb on - strand at 2484.985 kb on - strand at 2485.021 kb on - strand at 2485.061 kb on - strand, within CCNA_02345 at 2485.065 kb on - strand, within CCNA_02345 at 2485.069 kb on + strand, within CCNA_02345 at 2485.077 kb on - strand, within CCNA_02345 at 2485.094 kb on - strand, within CCNA_02345 at 2485.105 kb on + strand, within CCNA_02345 at 2485.117 kb on + strand, within CCNA_02345 at 2485.123 kb on - strand, within CCNA_02345 at 2485.135 kb on + strand, within CCNA_02345 at 2485.135 kb on + strand, within CCNA_02345 at 2485.168 kb on + strand, within CCNA_02345 at 2485.178 kb on - strand, within CCNA_02345 at 2485.207 kb on + strand at 2485.238 kb on - strand at 2485.240 kb on + strand at 2485.346 kb on - strand, within CCNA_02346 at 2485.369 kb on + strand, within CCNA_02346 at 2485.459 kb on - strand, within CCNA_02346 at 2485.512 kb on + strand, within CCNA_02346 at 2485.520 kb on - strand, within CCNA_02346 at 2485.631 kb on + strand, within CCNA_02346 at 2485.767 kb on + strand, within CCNA_02346 at 2485.782 kb on + strand, within CCNA_02346 at 2485.799 kb on + strand, within CCNA_02346 at 2485.824 kb on + strand, within CCNA_02346 at 2485.835 kb on + strand, within CCNA_02346
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,483,138 - CCNA_02343 0.28 -0.4 2,483,144 + CCNA_02343 0.29 -1.1 2,483,150 - CCNA_02343 0.29 +1.4 2,483,150 - CCNA_02343 0.29 -0.2 2,483,187 - CCNA_02343 0.32 +0.9 2,483,187 - CCNA_02343 0.32 -0.1 2,483,194 - CCNA_02343 0.33 +0.8 2,483,194 - CCNA_02343 0.33 +0.1 2,483,222 + CCNA_02343 0.35 -2.0 2,483,230 - CCNA_02343 0.35 +0.1 2,483,230 - CCNA_02343 0.35 +1.0 2,483,302 + CCNA_02343 0.41 +0.1 2,483,302 + CCNA_02343 0.41 -0.8 2,483,302 + CCNA_02343 0.41 +0.8 2,483,310 - CCNA_02343 0.42 +0.6 2,483,310 - CCNA_02343 0.42 +0.0 2,483,310 - CCNA_02343 0.42 -0.1 2,483,358 + CCNA_02343 0.46 -1.4 2,483,375 - CCNA_02343 0.47 -3.0 2,483,375 - CCNA_02343 0.47 +0.7 2,483,385 - CCNA_02343 0.48 -0.6 2,483,395 + CCNA_02343 0.48 -0.0 2,483,400 + CCNA_02343 0.49 -2.0 2,483,400 + CCNA_02343 0.49 -1.7 2,483,403 - CCNA_02343 0.49 +0.2 2,483,405 + CCNA_02343 0.49 +0.7 2,483,405 + CCNA_02343 0.49 +0.4 2,483,408 - CCNA_02343 0.50 +0.3 2,483,410 + CCNA_02343 0.50 -0.0 2,483,410 + CCNA_02343 0.50 +0.0 2,483,410 + CCNA_02343 0.50 -0.7 2,483,413 - CCNA_02343 0.50 +0.1 2,483,445 + CCNA_02343 0.52 -0.8 2,483,463 - CCNA_02343 0.54 +0.4 2,483,487 - CCNA_02343 0.56 -0.0 2,483,487 - CCNA_02343 0.56 -0.0 2,483,492 - CCNA_02343 0.56 +0.7 2,483,498 - CCNA_02343 0.57 +0.8 2,483,518 - CCNA_02343 0.58 +1.0 2,483,518 - CCNA_02343 0.58 -0.7 2,483,518 - CCNA_02343 0.58 +0.3 2,483,518 - CCNA_02343 0.58 +0.3 2,483,518 - CCNA_02343 0.58 +0.9 2,483,518 - CCNA_02343 0.58 +0.3 2,483,525 + CCNA_02343 0.59 -0.4 2,483,590 + CCNA_02343 0.64 +0.5 2,483,590 + CCNA_02343 0.64 -0.4 2,483,590 + CCNA_02343 0.64 -0.9 2,483,590 + CCNA_02343 0.64 +0.1 2,483,609 + CCNA_02343 0.65 -0.3 2,483,651 - CCNA_02343 0.69 +1.3 2,483,688 + CCNA_02343 0.72 -0.1 2,483,696 - CCNA_02343 0.72 +0.1 2,483,696 - CCNA_02343 0.72 -0.1 2,483,698 + CCNA_02343 0.73 -0.6 2,483,706 - CCNA_02343 0.73 +0.7 2,483,708 + CCNA_02343 0.73 -1.3 2,483,713 + CCNA_02343 0.74 -1.4 2,483,716 - CCNA_02343 0.74 +0.8 2,483,716 - CCNA_02343 0.74 -0.3 2,483,721 - CCNA_02343 0.74 -0.4 2,483,721 - CCNA_02343 0.74 +0.5 2,483,728 + CCNA_02343 0.75 -0.1 2,483,728 + CCNA_02343 0.75 -0.9 2,483,728 + CCNA_02343 0.75 -0.1 2,483,738 + CCNA_02343 0.76 -0.0 2,483,738 + CCNA_02343 0.76 -1.7 2,483,738 + CCNA_02343 0.76 -0.9 2,483,738 + CCNA_02343 0.76 -1.0 2,483,743 + CCNA_02343 0.76 -0.9 2,483,743 + CCNA_02343 0.76 -0.9 2,483,751 - CCNA_02343 0.77 -0.0 2,483,804 - CCNA_02343 0.81 +0.6 2,483,811 - CCNA_02343 0.82 +0.2 2,483,833 + CCNA_02343 0.83 -0.4 2,483,833 + CCNA_02343 0.83 -0.2 2,483,841 - CCNA_02343 0.84 +0.1 2,483,899 + CCNA_02343 0.88 -0.1 2,483,942 + -2.0 2,483,954 + -0.1 2,483,969 - -0.1 2,483,971 - -0.7 2,483,988 + +0.2 2,484,052 + -1.6 2,484,074 + -3.0 2,484,074 + +0.1 2,484,082 - -0.5 2,484,133 + -0.3 2,484,155 + -0.0 2,484,313 - CCNA_02344 0.25 +1.3 2,484,332 + CCNA_02344 0.27 -0.1 2,484,426 - CCNA_02344 0.41 -0.9 2,484,559 + CCNA_02344 0.59 +0.7 2,484,631 - CCNA_02344 0.69 +0.4 2,484,673 + CCNA_02344 0.75 -1.0 2,484,768 + CCNA_02344 0.89 -0.1 2,484,813 + +0.7 2,484,886 + -1.3 2,484,886 + -1.0 2,484,886 + +0.4 2,484,886 + -0.2 2,484,894 - -0.3 2,484,954 - -0.3 2,484,955 + +0.7 2,484,959 + -1.7 2,484,967 - +0.2 2,484,967 - -0.7 2,484,985 - -0.2 2,485,021 - -1.7 2,485,061 - CCNA_02345 0.24 +0.4 2,485,065 - CCNA_02345 0.25 +0.5 2,485,069 + CCNA_02345 0.27 -0.0 2,485,077 - CCNA_02345 0.31 +0.3 2,485,094 - CCNA_02345 0.39 +0.4 2,485,105 + CCNA_02345 0.44 +2.2 2,485,117 + CCNA_02345 0.50 +0.1 2,485,123 - CCNA_02345 0.52 -0.1 2,485,135 + CCNA_02345 0.58 +0.1 2,485,135 + CCNA_02345 0.58 +0.5 2,485,168 + CCNA_02345 0.73 -0.6 2,485,178 - CCNA_02345 0.78 -0.4 2,485,207 + +0.1 2,485,238 - -0.1 2,485,240 + -0.1 2,485,346 - CCNA_02346 0.13 +0.4 2,485,369 + CCNA_02346 0.15 +0.4 2,485,459 - CCNA_02346 0.25 +1.4 2,485,512 + CCNA_02346 0.30 +0.6 2,485,520 - CCNA_02346 0.31 -0.5 2,485,631 + CCNA_02346 0.43 -1.0 2,485,767 + CCNA_02346 0.57 -1.1 2,485,782 + CCNA_02346 0.59 -1.8 2,485,799 + CCNA_02346 0.60 -0.0 2,485,824 + CCNA_02346 0.63 +0.4 2,485,835 + CCNA_02346 0.64 +0.2
Or see this region's nucleotide sequence