Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02316 and CCNA_02317 overlap by 91 nucleotides CCNA_02317 and CCNA_02318 are separated by 28 nucleotides CCNA_02318 and CCNA_02319 are separated by 116 nucleotides CCNA_02319 and CCNA_02320 are separated by 118 nucleotides
CCNA_02316: CCNA_02316 - hypothetical protein, at 2,460,427 to 2,460,942
_02316
CCNA_02317: CCNA_02317 - hypothetical protein, at 2,460,852 to 2,461,289
_02317
CCNA_02318: CCNA_02318 - hypothetical protein, at 2,461,318 to 2,461,581
_02318
CCNA_02319: CCNA_02319 - hypothetical protein, at 2,461,698 to 2,462,216
_02319
CCNA_02320: CCNA_02320 - 2'-deoxycytidine 5'-triphosphate deaminase, at 2,462,335 to 2,463,360
_02320
Position (kb)
2461
2462
2463 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2460.721 kb on - strand, within CCNA_02316 at 2460.721 kb on - strand, within CCNA_02316 at 2460.738 kb on - strand, within CCNA_02316 at 2460.738 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.766 kb on - strand, within CCNA_02316 at 2460.782 kb on + strand, within CCNA_02316 at 2460.782 kb on + strand, within CCNA_02316 at 2460.782 kb on + strand, within CCNA_02316 at 2460.825 kb on - strand, within CCNA_02316 at 2460.836 kb on - strand, within CCNA_02316 at 2460.850 kb on + strand, within CCNA_02316 at 2460.857 kb on - strand at 2460.880 kb on - strand at 2460.895 kb on + strand at 2460.910 kb on - strand at 2460.939 kb on + strand at 2460.949 kb on + strand, within CCNA_02317 at 2460.957 kb on - strand, within CCNA_02317 at 2460.957 kb on - strand, within CCNA_02317 at 2460.957 kb on - strand, within CCNA_02317 at 2460.958 kb on + strand, within CCNA_02317 at 2460.993 kb on - strand, within CCNA_02317 at 2461.025 kb on + strand, within CCNA_02317 at 2461.044 kb on - strand, within CCNA_02317 at 2461.244 kb on + strand, within CCNA_02317 at 2461.276 kb on - strand at 2461.291 kb on + strand at 2461.325 kb on - strand at 2461.348 kb on + strand, within CCNA_02318 at 2461.413 kb on + strand, within CCNA_02318 at 2461.463 kb on + strand, within CCNA_02318 at 2461.695 kb on + strand at 2461.782 kb on + strand, within CCNA_02319 at 2461.797 kb on + strand, within CCNA_02319 at 2461.797 kb on + strand, within CCNA_02319 at 2461.797 kb on + strand, within CCNA_02319 at 2461.805 kb on - strand, within CCNA_02319 at 2461.821 kb on + strand, within CCNA_02319 at 2461.836 kb on + strand, within CCNA_02319 at 2461.837 kb on - strand, within CCNA_02319 at 2461.884 kb on + strand, within CCNA_02319 at 2461.942 kb on + strand, within CCNA_02319 at 2461.955 kb on - strand, within CCNA_02319 at 2461.956 kb on - strand, within CCNA_02319 at 2462.008 kb on - strand, within CCNA_02319 at 2462.010 kb on + strand, within CCNA_02319 at 2462.020 kb on - strand, within CCNA_02319 at 2462.037 kb on - strand, within CCNA_02319 at 2462.039 kb on + strand, within CCNA_02319 at 2462.039 kb on + strand, within CCNA_02319 at 2462.044 kb on + strand, within CCNA_02319 at 2462.044 kb on + strand, within CCNA_02319 at 2462.044 kb on + strand, within CCNA_02319 at 2462.047 kb on - strand, within CCNA_02319 at 2462.047 kb on - strand, within CCNA_02319 at 2462.052 kb on - strand, within CCNA_02319 at 2462.052 kb on - strand, within CCNA_02319 at 2462.052 kb on - strand, within CCNA_02319 at 2462.281 kb on + strand at 2462.353 kb on - strand at 2462.402 kb on + strand at 2462.410 kb on - strand at 2462.410 kb on - strand at 2462.440 kb on + strand, within CCNA_02320 at 2462.714 kb on - strand, within CCNA_02320 at 2462.741 kb on - strand, within CCNA_02320 at 2462.741 kb on - strand, within CCNA_02320 at 2462.766 kb on - strand, within CCNA_02320 at 2462.933 kb on + strand, within CCNA_02320 at 2462.941 kb on - strand, within CCNA_02320 at 2462.941 kb on - strand, within CCNA_02320 at 2462.941 kb on - strand, within CCNA_02320 at 2462.943 kb on + strand, within CCNA_02320 at 2462.943 kb on + strand, within CCNA_02320 at 2462.951 kb on - strand, within CCNA_02320 at 2462.955 kb on - strand, within CCNA_02320 at 2462.987 kb on + strand, within CCNA_02320 at 2463.066 kb on + strand, within CCNA_02320 at 2463.067 kb on + strand, within CCNA_02320 at 2463.078 kb on + strand, within CCNA_02320 at 2463.106 kb on - strand, within CCNA_02320 at 2463.127 kb on + strand, within CCNA_02320 at 2463.132 kb on + strand, within CCNA_02320 at 2463.140 kb on - strand, within CCNA_02320 at 2463.140 kb on - strand, within CCNA_02320 at 2463.142 kb on + strand, within CCNA_02320
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,460,721 - CCNA_02316 0.57 +0.2 2,460,721 - CCNA_02316 0.57 +1.1 2,460,738 - CCNA_02316 0.60 -0.4 2,460,738 - CCNA_02316 0.60 +0.3 2,460,743 - CCNA_02316 0.61 +0.0 2,460,743 - CCNA_02316 0.61 +0.7 2,460,743 - CCNA_02316 0.61 +0.7 2,460,743 - CCNA_02316 0.61 +0.3 2,460,743 - CCNA_02316 0.61 +0.4 2,460,743 - CCNA_02316 0.61 -0.2 2,460,743 - CCNA_02316 0.61 +0.2 2,460,743 - CCNA_02316 0.61 -0.9 2,460,766 - CCNA_02316 0.66 +0.5 2,460,782 + CCNA_02316 0.69 +0.7 2,460,782 + CCNA_02316 0.69 -0.5 2,460,782 + CCNA_02316 0.69 +0.2 2,460,825 - CCNA_02316 0.77 +0.4 2,460,836 - CCNA_02316 0.79 -0.2 2,460,850 + CCNA_02316 0.82 -0.2 2,460,857 - -0.4 2,460,880 - +0.3 2,460,895 + +0.2 2,460,910 - -1.1 2,460,939 + -0.4 2,460,949 + CCNA_02317 0.22 +1.7 2,460,957 - CCNA_02317 0.24 +1.1 2,460,957 - CCNA_02317 0.24 -0.8 2,460,957 - CCNA_02317 0.24 +0.8 2,460,958 + CCNA_02317 0.24 +2.2 2,460,993 - CCNA_02317 0.32 -0.1 2,461,025 + CCNA_02317 0.39 -0.1 2,461,044 - CCNA_02317 0.44 +0.1 2,461,244 + CCNA_02317 0.89 +0.4 2,461,276 - -0.3 2,461,291 + -0.5 2,461,325 - +0.9 2,461,348 + CCNA_02318 0.11 -0.0 2,461,413 + CCNA_02318 0.36 -0.2 2,461,463 + CCNA_02318 0.55 -0.4 2,461,695 + +0.9 2,461,782 + CCNA_02319 0.16 -1.1 2,461,797 + CCNA_02319 0.19 -0.7 2,461,797 + CCNA_02319 0.19 -1.7 2,461,797 + CCNA_02319 0.19 +0.5 2,461,805 - CCNA_02319 0.21 -1.0 2,461,821 + CCNA_02319 0.24 -0.3 2,461,836 + CCNA_02319 0.27 +0.2 2,461,837 - CCNA_02319 0.27 -0.3 2,461,884 + CCNA_02319 0.36 +2.3 2,461,942 + CCNA_02319 0.47 +0.1 2,461,955 - CCNA_02319 0.50 -0.9 2,461,956 - CCNA_02319 0.50 -0.4 2,462,008 - CCNA_02319 0.60 -0.2 2,462,010 + CCNA_02319 0.60 -0.8 2,462,020 - CCNA_02319 0.62 -0.0 2,462,037 - CCNA_02319 0.65 -0.9 2,462,039 + CCNA_02319 0.66 -2.2 2,462,039 + CCNA_02319 0.66 -0.6 2,462,044 + CCNA_02319 0.67 -0.2 2,462,044 + CCNA_02319 0.67 -0.7 2,462,044 + CCNA_02319 0.67 -0.1 2,462,047 - CCNA_02319 0.67 -1.9 2,462,047 - CCNA_02319 0.67 +0.4 2,462,052 - CCNA_02319 0.68 +0.0 2,462,052 - CCNA_02319 0.68 +0.5 2,462,052 - CCNA_02319 0.68 +0.6 2,462,281 + -0.3 2,462,353 - -0.4 2,462,402 + -0.1 2,462,410 - -0.8 2,462,410 - +0.3 2,462,440 + CCNA_02320 0.10 -0.3 2,462,714 - CCNA_02320 0.37 -0.3 2,462,741 - CCNA_02320 0.40 -1.7 2,462,741 - CCNA_02320 0.40 -2.2 2,462,766 - CCNA_02320 0.42 -0.1 2,462,933 + CCNA_02320 0.58 -0.3 2,462,941 - CCNA_02320 0.59 +0.7 2,462,941 - CCNA_02320 0.59 -0.6 2,462,941 - CCNA_02320 0.59 -0.7 2,462,943 + CCNA_02320 0.59 +0.3 2,462,943 + CCNA_02320 0.59 -0.1 2,462,951 - CCNA_02320 0.60 -2.2 2,462,955 - CCNA_02320 0.60 -2.8 2,462,987 + CCNA_02320 0.64 +1.7 2,463,066 + CCNA_02320 0.71 -0.5 2,463,067 + CCNA_02320 0.71 +1.9 2,463,078 + CCNA_02320 0.72 -0.7 2,463,106 - CCNA_02320 0.75 -1.1 2,463,127 + CCNA_02320 0.77 -1.4 2,463,132 + CCNA_02320 0.78 +0.1 2,463,140 - CCNA_02320 0.78 -0.0 2,463,140 - CCNA_02320 0.78 -0.4 2,463,142 + CCNA_02320 0.79 -0.1
Or see this region's nucleotide sequence