Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02268 and CCNA_R0053 are separated by 214 nucleotides CCNA_R0053 and CCNA_02269 are separated by 101 nucleotides CCNA_02269 and CCNA_02270 are separated by 117 nucleotides CCNA_02270 and CCNA_02271 are separated by 227 nucleotides
CCNA_02267: CCNA_02267 - serine hydrolase family protein, at 2,420,364 to 2,420,987
_02267
CCNA_02268: CCNA_02268 - laminin G domain protein, at 2,420,938 to 2,421,585
_02268
CCNA_R0053: CCNA_R0053 - tRNA-Leu, at 2,421,800 to 2,421,884
_R0053
CCNA_02269: CCNA_02269 - L-aminopeptidase/D-esterase dmpA, at 2,421,986 to 2,422,978
_02269
CCNA_02270: CCNA_02270 - MarR-family transcriptional regulator, at 2,423,096 to 2,423,605
_02270
CCNA_02271: CCNA_02271 - stalk cross-band protein StpD, at 2,423,833 to 2,424,618
_02271
Position (kb)
2421
2422
2423 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2421.041 kb on - strand, within CCNA_02268 at 2421.055 kb on + strand, within CCNA_02268 at 2421.063 kb on - strand, within CCNA_02268 at 2421.069 kb on + strand, within CCNA_02268 at 2421.077 kb on - strand, within CCNA_02268 at 2421.079 kb on + strand, within CCNA_02268 at 2421.099 kb on + strand, within CCNA_02268 at 2421.100 kb on - strand, within CCNA_02268 at 2421.118 kb on + strand, within CCNA_02268 at 2421.139 kb on + strand, within CCNA_02268 at 2421.147 kb on - strand, within CCNA_02268 at 2421.147 kb on - strand, within CCNA_02268 at 2421.147 kb on - strand, within CCNA_02268 at 2421.152 kb on + strand, within CCNA_02268 at 2421.234 kb on + strand, within CCNA_02268 at 2421.236 kb on + strand, within CCNA_02268 at 2421.236 kb on + strand, within CCNA_02268 at 2421.236 kb on + strand, within CCNA_02268 at 2421.236 kb on + strand, within CCNA_02268 at 2421.237 kb on - strand, within CCNA_02268 at 2421.244 kb on - strand, within CCNA_02268 at 2421.244 kb on - strand, within CCNA_02268 at 2421.249 kb on - strand, within CCNA_02268 at 2421.307 kb on - strand, within CCNA_02268 at 2421.307 kb on - strand, within CCNA_02268 at 2421.334 kb on - strand, within CCNA_02268 at 2421.382 kb on - strand, within CCNA_02268 at 2421.383 kb on - strand, within CCNA_02268 at 2421.392 kb on - strand, within CCNA_02268 at 2421.474 kb on + strand, within CCNA_02268 at 2421.589 kb on - strand at 2421.625 kb on + strand at 2421.630 kb on + strand at 2421.695 kb on + strand at 2421.956 kb on + strand at 2421.956 kb on + strand at 2421.956 kb on + strand at 2421.964 kb on - strand at 2421.988 kb on + strand at 2421.996 kb on - strand at 2422.029 kb on + strand at 2422.037 kb on - strand at 2422.071 kb on + strand at 2422.084 kb on + strand at 2422.085 kb on - strand at 2422.089 kb on + strand, within CCNA_02269 at 2422.097 kb on - strand, within CCNA_02269 at 2422.097 kb on - strand, within CCNA_02269 at 2422.097 kb on - strand, within CCNA_02269 at 2422.110 kb on + strand, within CCNA_02269 at 2422.128 kb on - strand, within CCNA_02269 at 2422.243 kb on + strand, within CCNA_02269 at 2422.243 kb on + strand, within CCNA_02269 at 2422.245 kb on + strand, within CCNA_02269 at 2422.245 kb on + strand, within CCNA_02269 at 2422.245 kb on + strand, within CCNA_02269 at 2422.245 kb on + strand, within CCNA_02269 at 2422.253 kb on - strand, within CCNA_02269 at 2422.253 kb on - strand, within CCNA_02269 at 2422.336 kb on + strand, within CCNA_02269 at 2422.357 kb on - strand, within CCNA_02269 at 2422.362 kb on - strand, within CCNA_02269 at 2422.454 kb on - strand, within CCNA_02269 at 2422.558 kb on - strand, within CCNA_02269 at 2422.635 kb on + strand, within CCNA_02269 at 2422.659 kb on + strand, within CCNA_02269 at 2422.731 kb on + strand, within CCNA_02269 at 2422.783 kb on - strand, within CCNA_02269 at 2422.799 kb on + strand, within CCNA_02269 at 2422.952 kb on + strand at 2422.960 kb on - strand at 2422.989 kb on - strand at 2423.086 kb on + strand at 2423.093 kb on + strand at 2423.094 kb on + strand at 2423.101 kb on - strand at 2423.102 kb on + strand at 2423.280 kb on - strand, within CCNA_02270 at 2423.325 kb on - strand, within CCNA_02270 at 2423.338 kb on + strand, within CCNA_02270 at 2423.391 kb on + strand, within CCNA_02270 at 2423.391 kb on + strand, within CCNA_02270 at 2423.425 kb on - strand, within CCNA_02270 at 2423.450 kb on + strand, within CCNA_02270 at 2423.458 kb on - strand, within CCNA_02270 at 2423.572 kb on + strand at 2423.580 kb on - strand at 2423.614 kb on + strand at 2423.662 kb on - strand at 2423.698 kb on - strand at 2423.723 kb on - strand at 2423.723 kb on - strand at 2423.754 kb on + strand at 2423.831 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,421,041 - CCNA_02268 0.16 -0.0 2,421,055 + CCNA_02268 0.18 +1.1 2,421,063 - CCNA_02268 0.19 +1.0 2,421,069 + CCNA_02268 0.20 -0.5 2,421,077 - CCNA_02268 0.21 -0.9 2,421,079 + CCNA_02268 0.22 -0.5 2,421,099 + CCNA_02268 0.25 -0.4 2,421,100 - CCNA_02268 0.25 +0.1 2,421,118 + CCNA_02268 0.28 -0.6 2,421,139 + CCNA_02268 0.31 +0.8 2,421,147 - CCNA_02268 0.32 -0.1 2,421,147 - CCNA_02268 0.32 +0.5 2,421,147 - CCNA_02268 0.32 -0.3 2,421,152 + CCNA_02268 0.33 -1.3 2,421,234 + CCNA_02268 0.46 -0.3 2,421,236 + CCNA_02268 0.46 -1.4 2,421,236 + CCNA_02268 0.46 -0.7 2,421,236 + CCNA_02268 0.46 -0.2 2,421,236 + CCNA_02268 0.46 +0.1 2,421,237 - CCNA_02268 0.46 +0.4 2,421,244 - CCNA_02268 0.47 -0.2 2,421,244 - CCNA_02268 0.47 -1.3 2,421,249 - CCNA_02268 0.48 +0.1 2,421,307 - CCNA_02268 0.57 -0.7 2,421,307 - CCNA_02268 0.57 -0.3 2,421,334 - CCNA_02268 0.61 +0.4 2,421,382 - CCNA_02268 0.69 -0.2 2,421,383 - CCNA_02268 0.69 +0.3 2,421,392 - CCNA_02268 0.70 +0.1 2,421,474 + CCNA_02268 0.83 -0.2 2,421,589 - -2.3 2,421,625 + +0.4 2,421,630 + -0.3 2,421,695 + +0.7 2,421,956 + -0.3 2,421,956 + -0.2 2,421,956 + -0.2 2,421,964 - -0.9 2,421,988 + -0.6 2,421,996 - -0.5 2,422,029 + +2.0 2,422,037 - -0.0 2,422,071 + -1.1 2,422,084 + -0.9 2,422,085 - -0.1 2,422,089 + CCNA_02269 0.10 +0.4 2,422,097 - CCNA_02269 0.11 +0.2 2,422,097 - CCNA_02269 0.11 -1.3 2,422,097 - CCNA_02269 0.11 -0.4 2,422,110 + CCNA_02269 0.12 -1.7 2,422,128 - CCNA_02269 0.14 -0.1 2,422,243 + CCNA_02269 0.26 +0.3 2,422,243 + CCNA_02269 0.26 +0.5 2,422,245 + CCNA_02269 0.26 +0.5 2,422,245 + CCNA_02269 0.26 -0.4 2,422,245 + CCNA_02269 0.26 -0.1 2,422,245 + CCNA_02269 0.26 -1.5 2,422,253 - CCNA_02269 0.27 +0.7 2,422,253 - CCNA_02269 0.27 -0.3 2,422,336 + CCNA_02269 0.35 +0.3 2,422,357 - CCNA_02269 0.37 -0.2 2,422,362 - CCNA_02269 0.38 -0.9 2,422,454 - CCNA_02269 0.47 -0.1 2,422,558 - CCNA_02269 0.58 +0.3 2,422,635 + CCNA_02269 0.65 -1.1 2,422,659 + CCNA_02269 0.68 -0.2 2,422,731 + CCNA_02269 0.75 -0.4 2,422,783 - CCNA_02269 0.80 -0.2 2,422,799 + CCNA_02269 0.82 +0.3 2,422,952 + -0.1 2,422,960 - +0.1 2,422,989 - +0.3 2,423,086 + +0.4 2,423,093 + -0.8 2,423,094 + -0.9 2,423,101 - +0.3 2,423,102 + -0.3 2,423,280 - CCNA_02270 0.36 +0.6 2,423,325 - CCNA_02270 0.45 +1.6 2,423,338 + CCNA_02270 0.47 -0.5 2,423,391 + CCNA_02270 0.58 -0.4 2,423,391 + CCNA_02270 0.58 -0.4 2,423,425 - CCNA_02270 0.65 +0.0 2,423,450 + CCNA_02270 0.69 +0.1 2,423,458 - CCNA_02270 0.71 +0.2 2,423,572 + -0.4 2,423,580 - -0.3 2,423,614 + -0.4 2,423,662 - +0.7 2,423,698 - +0.2 2,423,723 - +0.7 2,423,723 - -0.1 2,423,754 + +0.3 2,423,831 + -0.5
Or see this region's nucleotide sequence