Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02247 and CCNA_02248 are separated by 1 nucleotides CCNA_02248 and CCNA_02249 are separated by 74 nucleotides CCNA_02249 and CCNA_02250 are separated by 207 nucleotides CCNA_02250 and CCNA_02251 are separated by 60 nucleotides CCNA_02251 and CCNA_02252 are separated by 21 nucleotides
CCNA_02247: CCNA_02247 - pantoate-beta-alanine ligase, at 2,396,214 to 2,397,071
_02247
CCNA_02248: CCNA_02248 - hypothetical protein, at 2,397,073 to 2,397,162
_02248
CCNA_02249: CCNA_02249 - conserved hypothetical cytosolic protein, at 2,397,237 to 2,397,635
_02249
CCNA_02250: CCNA_02250 - methylcrotonyl-CoA carboxylase biotin-containing subunit, at 2,397,843 to 2,399,807
_02250
CCNA_02251: CCNA_02251 - methylglutaconyl-CoA hydratase, at 2,399,868 to 2,400,707
_02251
CCNA_02252: CCNA_02252 - methylcrotonyl-CoA carboxylase carboxyl transferase subunit, at 2,400,729 to 2,402,321
_02252
Position (kb)
2397
2398
2399
2400 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2397.108 kb on + strand, within CCNA_02248 at 2397.113 kb on + strand, within CCNA_02248 at 2397.171 kb on + strand at 2397.171 kb on + strand at 2397.179 kb on - strand at 2397.199 kb on - strand at 2397.364 kb on - strand, within CCNA_02249 at 2397.470 kb on - strand, within CCNA_02249 at 2397.470 kb on - strand, within CCNA_02249 at 2397.475 kb on - strand, within CCNA_02249 at 2397.484 kb on + strand, within CCNA_02249 at 2397.484 kb on + strand, within CCNA_02249 at 2397.557 kb on - strand, within CCNA_02249 at 2397.577 kb on + strand, within CCNA_02249 at 2397.614 kb on + strand at 2397.624 kb on + strand at 2397.627 kb on - strand at 2397.637 kb on - strand at 2397.639 kb on - strand at 2397.646 kb on - strand at 2397.659 kb on + strand at 2397.667 kb on - strand at 2397.771 kb on - strand at 2397.771 kb on - strand at 2397.771 kb on - strand at 2397.846 kb on + strand at 2397.846 kb on + strand at 2397.849 kb on - strand at 2397.865 kb on - strand at 2397.867 kb on + strand at 2397.867 kb on + strand at 2397.875 kb on - strand at 2397.943 kb on + strand at 2397.968 kb on + strand at 2397.984 kb on + strand at 2398.025 kb on - strand at 2398.124 kb on - strand, within CCNA_02250 at 2398.238 kb on - strand, within CCNA_02250 at 2398.238 kb on - strand, within CCNA_02250 at 2398.248 kb on + strand, within CCNA_02250 at 2398.263 kb on - strand, within CCNA_02250 at 2398.486 kb on - strand, within CCNA_02250 at 2398.632 kb on - strand, within CCNA_02250 at 2398.639 kb on - strand, within CCNA_02250 at 2398.674 kb on + strand, within CCNA_02250 at 2398.684 kb on - strand, within CCNA_02250 at 2398.705 kb on + strand, within CCNA_02250 at 2398.771 kb on + strand, within CCNA_02250 at 2398.779 kb on - strand, within CCNA_02250 at 2398.792 kb on + strand, within CCNA_02250 at 2398.879 kb on - strand, within CCNA_02250 at 2398.966 kb on - strand, within CCNA_02250 at 2398.993 kb on - strand, within CCNA_02250 at 2399.014 kb on - strand, within CCNA_02250 at 2399.023 kb on + strand, within CCNA_02250 at 2399.023 kb on + strand, within CCNA_02250 at 2399.031 kb on - strand, within CCNA_02250 at 2399.038 kb on + strand, within CCNA_02250 at 2399.273 kb on + strand, within CCNA_02250 at 2399.296 kb on + strand, within CCNA_02250 at 2399.298 kb on - strand, within CCNA_02250 at 2399.309 kb on - strand, within CCNA_02250 at 2399.332 kb on + strand, within CCNA_02250 at 2399.332 kb on + strand, within CCNA_02250 at 2399.332 kb on + strand, within CCNA_02250 at 2399.332 kb on + strand, within CCNA_02250 at 2399.332 kb on + strand, within CCNA_02250 at 2399.332 kb on + strand, within CCNA_02250 at 2399.426 kb on + strand, within CCNA_02250 at 2399.621 kb on + strand at 2399.621 kb on + strand at 2399.621 kb on + strand at 2399.621 kb on + strand at 2399.621 kb on + strand at 2399.668 kb on - strand at 2399.797 kb on + strand at 2399.797 kb on + strand at 2399.800 kb on - strand at 2399.805 kb on - strand at 2399.822 kb on - strand at 2399.845 kb on - strand at 2399.868 kb on - strand at 2400.125 kb on - strand, within CCNA_02251 at 2400.130 kb on - strand, within CCNA_02251 at 2400.244 kb on - strand, within CCNA_02251 at 2400.311 kb on - strand, within CCNA_02251 at 2400.311 kb on - strand, within CCNA_02251 at 2400.329 kb on - strand, within CCNA_02251 at 2400.329 kb on - strand, within CCNA_02251 at 2400.466 kb on - strand, within CCNA_02251 at 2400.533 kb on - strand, within CCNA_02251
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,397,108 + CCNA_02248 0.39 -0.5 2,397,113 + CCNA_02248 0.44 +0.1 2,397,171 + +0.2 2,397,171 + -0.3 2,397,179 - +0.4 2,397,199 - +1.0 2,397,364 - CCNA_02249 0.32 +0.5 2,397,470 - CCNA_02249 0.58 +0.3 2,397,470 - CCNA_02249 0.58 +0.3 2,397,475 - CCNA_02249 0.60 -0.9 2,397,484 + CCNA_02249 0.62 -0.1 2,397,484 + CCNA_02249 0.62 +0.3 2,397,557 - CCNA_02249 0.80 -1.8 2,397,577 + CCNA_02249 0.85 -0.3 2,397,614 + -0.2 2,397,624 + -1.4 2,397,627 - +0.2 2,397,637 - -0.2 2,397,639 - +0.1 2,397,646 - +1.0 2,397,659 + -1.4 2,397,667 - +0.1 2,397,771 - +0.2 2,397,771 - +0.1 2,397,771 - +0.4 2,397,846 + -1.1 2,397,846 + -0.5 2,397,849 - +0.8 2,397,865 - -0.2 2,397,867 + -0.8 2,397,867 + -0.7 2,397,875 - -0.9 2,397,943 + -0.0 2,397,968 + -2.3 2,397,984 + -0.5 2,398,025 - -0.9 2,398,124 - CCNA_02250 0.14 -0.9 2,398,238 - CCNA_02250 0.20 -0.9 2,398,238 - CCNA_02250 0.20 +0.3 2,398,248 + CCNA_02250 0.21 +0.6 2,398,263 - CCNA_02250 0.21 -0.2 2,398,486 - CCNA_02250 0.33 +0.6 2,398,632 - CCNA_02250 0.40 -0.8 2,398,639 - CCNA_02250 0.41 -1.1 2,398,674 + CCNA_02250 0.42 +0.1 2,398,684 - CCNA_02250 0.43 -0.1 2,398,705 + CCNA_02250 0.44 -2.1 2,398,771 + CCNA_02250 0.47 -0.8 2,398,779 - CCNA_02250 0.48 -0.1 2,398,792 + CCNA_02250 0.48 +0.1 2,398,879 - CCNA_02250 0.53 +0.3 2,398,966 - CCNA_02250 0.57 -0.7 2,398,993 - CCNA_02250 0.59 -0.4 2,399,014 - CCNA_02250 0.60 -0.5 2,399,023 + CCNA_02250 0.60 +0.6 2,399,023 + CCNA_02250 0.60 -0.7 2,399,031 - CCNA_02250 0.60 -1.4 2,399,038 + CCNA_02250 0.61 +0.5 2,399,273 + CCNA_02250 0.73 +0.2 2,399,296 + CCNA_02250 0.74 -0.6 2,399,298 - CCNA_02250 0.74 +0.0 2,399,309 - CCNA_02250 0.75 -0.5 2,399,332 + CCNA_02250 0.76 +0.3 2,399,332 + CCNA_02250 0.76 +0.1 2,399,332 + CCNA_02250 0.76 -0.3 2,399,332 + CCNA_02250 0.76 -0.4 2,399,332 + CCNA_02250 0.76 -0.5 2,399,332 + CCNA_02250 0.76 -0.8 2,399,426 + CCNA_02250 0.81 +0.6 2,399,621 + -0.5 2,399,621 + -0.3 2,399,621 + -0.9 2,399,621 + -0.4 2,399,621 + -2.0 2,399,668 - +0.6 2,399,797 + -1.0 2,399,797 + -2.1 2,399,800 - +0.3 2,399,805 - +0.0 2,399,822 - +0.5 2,399,845 - +0.9 2,399,868 - -0.9 2,400,125 - CCNA_02251 0.31 -0.9 2,400,130 - CCNA_02251 0.31 -2.3 2,400,244 - CCNA_02251 0.45 +2.6 2,400,311 - CCNA_02251 0.53 -1.1 2,400,311 - CCNA_02251 0.53 -0.2 2,400,329 - CCNA_02251 0.55 -1.1 2,400,329 - CCNA_02251 0.55 -0.8 2,400,466 - CCNA_02251 0.71 +0.3 2,400,533 - CCNA_02251 0.79 +0.6
Or see this region's nucleotide sequence