Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02223 and CCNA_02224 overlap by 4 nucleotides CCNA_02224 and CCNA_02225 overlap by 4 nucleotides CCNA_02225 and CCNA_02226 are separated by 43 nucleotides CCNA_02226 and CCNA_02227 are separated by 31 nucleotides
CCNA_02223: CCNA_02223 - beta-lactamase, type II, at 2,371,873 to 2,372,742
_02223
CCNA_02224: CCNA_02224 - methylenetetrahydrofolate reductase, at 2,372,739 to 2,373,683
_02224
CCNA_02225: CCNA_02225 - ArsR family/SAM-dependent transcriptional regulator, at 2,373,680 to 2,374,657
_02225
CCNA_02226: CCNA_02226 - glyoxalase family protein, at 2,374,701 to 2,375,078
_02226
CCNA_02227: CCNA_02227 - LysR-family transcriptional regulator, at 2,375,110 to 2,375,982
_02227
Position (kb)
2373
2374
2375 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2372.690 kb on + strand at 2372.695 kb on + strand at 2372.698 kb on - strand at 2372.698 kb on - strand at 2372.759 kb on - strand at 2372.781 kb on + strand at 2372.786 kb on + strand at 2372.789 kb on - strand at 2372.808 kb on - strand at 2372.825 kb on + strand at 2372.827 kb on - strand at 2372.835 kb on - strand, within CCNA_02224 at 2372.874 kb on + strand, within CCNA_02224 at 2372.963 kb on - strand, within CCNA_02224 at 2373.105 kb on - strand, within CCNA_02224 at 2373.151 kb on - strand, within CCNA_02224 at 2373.152 kb on + strand, within CCNA_02224 at 2373.199 kb on - strand, within CCNA_02224 at 2373.205 kb on - strand, within CCNA_02224 at 2373.210 kb on - strand, within CCNA_02224 at 2373.210 kb on - strand, within CCNA_02224 at 2373.224 kb on + strand, within CCNA_02224 at 2373.232 kb on - strand, within CCNA_02224 at 2373.241 kb on + strand, within CCNA_02224 at 2373.241 kb on + strand, within CCNA_02224 at 2373.243 kb on - strand, within CCNA_02224 at 2373.249 kb on - strand, within CCNA_02224 at 2373.249 kb on - strand, within CCNA_02224 at 2373.249 kb on - strand, within CCNA_02224 at 2373.254 kb on - strand, within CCNA_02224 at 2373.259 kb on - strand, within CCNA_02224 at 2373.264 kb on + strand, within CCNA_02224 at 2373.335 kb on - strand, within CCNA_02224 at 2373.341 kb on + strand, within CCNA_02224 at 2373.414 kb on + strand, within CCNA_02224 at 2373.414 kb on + strand, within CCNA_02224 at 2373.422 kb on - strand, within CCNA_02224 at 2373.422 kb on - strand, within CCNA_02224 at 2373.422 kb on - strand, within CCNA_02224 at 2373.439 kb on - strand, within CCNA_02224 at 2373.454 kb on - strand, within CCNA_02224 at 2373.500 kb on + strand, within CCNA_02224 at 2373.591 kb on - strand at 2373.591 kb on - strand at 2373.649 kb on + strand at 2373.687 kb on - strand at 2373.692 kb on + strand at 2373.692 kb on + strand at 2373.692 kb on + strand at 2373.692 kb on + strand at 2373.700 kb on - strand at 2373.726 kb on + strand at 2373.726 kb on + strand at 2373.734 kb on - strand at 2373.734 kb on - strand at 2373.734 kb on - strand at 2373.734 kb on - strand at 2373.837 kb on - strand, within CCNA_02225 at 2373.856 kb on - strand, within CCNA_02225 at 2373.861 kb on - strand, within CCNA_02225 at 2373.861 kb on - strand, within CCNA_02225 at 2373.931 kb on - strand, within CCNA_02225 at 2373.944 kb on - strand, within CCNA_02225 at 2373.969 kb on - strand, within CCNA_02225 at 2373.971 kb on + strand, within CCNA_02225 at 2373.971 kb on - strand, within CCNA_02225 at 2374.056 kb on - strand, within CCNA_02225 at 2374.065 kb on - strand, within CCNA_02225 at 2374.102 kb on - strand, within CCNA_02225 at 2374.122 kb on - strand, within CCNA_02225 at 2374.122 kb on - strand, within CCNA_02225 at 2374.317 kb on + strand, within CCNA_02225 at 2374.419 kb on - strand, within CCNA_02225 at 2374.458 kb on - strand, within CCNA_02225 at 2374.480 kb on - strand, within CCNA_02225 at 2374.547 kb on - strand, within CCNA_02225 at 2374.705 kb on + strand at 2374.831 kb on + strand, within CCNA_02226 at 2374.836 kb on + strand, within CCNA_02226 at 2374.839 kb on - strand, within CCNA_02226 at 2374.854 kb on + strand, within CCNA_02226 at 2374.860 kb on - strand, within CCNA_02226 at 2374.881 kb on - strand, within CCNA_02226 at 2374.902 kb on + strand, within CCNA_02226 at 2374.911 kb on - strand, within CCNA_02226 at 2374.945 kb on + strand, within CCNA_02226 at 2374.953 kb on - strand, within CCNA_02226 at 2374.953 kb on - strand, within CCNA_02226 at 2374.977 kb on + strand, within CCNA_02226 at 2374.985 kb on - strand, within CCNA_02226 at 2375.021 kb on - strand, within CCNA_02226 at 2375.023 kb on + strand, within CCNA_02226 at 2375.023 kb on + strand, within CCNA_02226 at 2375.031 kb on - strand, within CCNA_02226 at 2375.031 kb on - strand, within CCNA_02226 at 2375.031 kb on - strand, within CCNA_02226 at 2375.031 kb on - strand, within CCNA_02226 at 2375.031 kb on - strand, within CCNA_02226 at 2375.043 kb on + strand at 2375.043 kb on + strand at 2375.051 kb on - strand at 2375.051 kb on - strand at 2375.061 kb on + strand at 2375.087 kb on + strand at 2375.095 kb on - strand at 2375.095 kb on - strand at 2375.191 kb on - strand at 2375.194 kb on - strand at 2375.204 kb on - strand, within CCNA_02227 at 2375.209 kb on - strand, within CCNA_02227 at 2375.210 kb on + strand, within CCNA_02227 at 2375.218 kb on - strand, within CCNA_02227 at 2375.225 kb on + strand, within CCNA_02227 at 2375.239 kb on + strand, within CCNA_02227 at 2375.248 kb on + strand, within CCNA_02227 at 2375.307 kb on + strand, within CCNA_02227 at 2375.314 kb on + strand, within CCNA_02227 at 2375.322 kb on - strand, within CCNA_02227 at 2375.359 kb on + strand, within CCNA_02227 at 2375.405 kb on + strand, within CCNA_02227 at 2375.423 kb on - strand, within CCNA_02227 at 2375.430 kb on + strand, within CCNA_02227 at 2375.447 kb on - strand, within CCNA_02227 at 2375.447 kb on - strand, within CCNA_02227 at 2375.448 kb on - strand, within CCNA_02227 at 2375.519 kb on + strand, within CCNA_02227 at 2375.527 kb on - strand, within CCNA_02227 at 2375.551 kb on + strand, within CCNA_02227 at 2375.557 kb on + strand, within CCNA_02227 at 2375.612 kb on + strand, within CCNA_02227 at 2375.642 kb on - strand, within CCNA_02227
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,372,690 + -0.2 2,372,695 + +1.1 2,372,698 - -0.5 2,372,698 - +1.1 2,372,759 - +0.5 2,372,781 + +0.5 2,372,786 + -1.1 2,372,789 - +0.3 2,372,808 - +0.2 2,372,825 + -1.8 2,372,827 - -0.0 2,372,835 - CCNA_02224 0.10 +0.7 2,372,874 + CCNA_02224 0.14 -1.3 2,372,963 - CCNA_02224 0.24 -0.2 2,373,105 - CCNA_02224 0.39 -0.1 2,373,151 - CCNA_02224 0.44 +0.5 2,373,152 + CCNA_02224 0.44 -2.6 2,373,199 - CCNA_02224 0.49 +1.1 2,373,205 - CCNA_02224 0.49 -0.3 2,373,210 - CCNA_02224 0.50 -0.3 2,373,210 - CCNA_02224 0.50 +0.2 2,373,224 + CCNA_02224 0.51 -0.6 2,373,232 - CCNA_02224 0.52 +0.4 2,373,241 + CCNA_02224 0.53 -0.2 2,373,241 + CCNA_02224 0.53 -0.4 2,373,243 - CCNA_02224 0.53 +0.0 2,373,249 - CCNA_02224 0.54 +0.2 2,373,249 - CCNA_02224 0.54 -0.3 2,373,249 - CCNA_02224 0.54 +1.1 2,373,254 - CCNA_02224 0.54 +0.8 2,373,259 - CCNA_02224 0.55 -0.1 2,373,264 + CCNA_02224 0.56 -0.9 2,373,335 - CCNA_02224 0.63 +0.4 2,373,341 + CCNA_02224 0.64 -0.8 2,373,414 + CCNA_02224 0.71 -1.4 2,373,414 + CCNA_02224 0.71 +0.8 2,373,422 - CCNA_02224 0.72 +0.1 2,373,422 - CCNA_02224 0.72 +0.0 2,373,422 - CCNA_02224 0.72 +0.1 2,373,439 - CCNA_02224 0.74 +0.5 2,373,454 - CCNA_02224 0.76 +0.5 2,373,500 + CCNA_02224 0.81 +0.2 2,373,591 - +0.2 2,373,591 - -0.1 2,373,649 + +0.2 2,373,687 - -0.8 2,373,692 + -0.7 2,373,692 + +0.3 2,373,692 + -0.8 2,373,692 + -1.1 2,373,700 - -0.7 2,373,726 + +0.3 2,373,726 + +2.2 2,373,734 - -0.0 2,373,734 - -2.4 2,373,734 - -0.0 2,373,734 - +0.1 2,373,837 - CCNA_02225 0.16 +0.3 2,373,856 - CCNA_02225 0.18 -0.2 2,373,861 - CCNA_02225 0.19 +0.2 2,373,861 - CCNA_02225 0.19 +0.1 2,373,931 - CCNA_02225 0.26 +0.8 2,373,944 - CCNA_02225 0.27 -1.1 2,373,969 - CCNA_02225 0.30 +0.6 2,373,971 + CCNA_02225 0.30 -1.1 2,373,971 - CCNA_02225 0.30 -0.1 2,374,056 - CCNA_02225 0.38 -0.5 2,374,065 - CCNA_02225 0.39 +0.1 2,374,102 - CCNA_02225 0.43 -0.5 2,374,122 - CCNA_02225 0.45 +0.8 2,374,122 - CCNA_02225 0.45 +0.2 2,374,317 + CCNA_02225 0.65 -0.0 2,374,419 - CCNA_02225 0.76 +0.3 2,374,458 - CCNA_02225 0.80 -0.2 2,374,480 - CCNA_02225 0.82 +0.1 2,374,547 - CCNA_02225 0.89 -0.2 2,374,705 + -0.7 2,374,831 + CCNA_02226 0.34 +0.6 2,374,836 + CCNA_02226 0.36 +0.8 2,374,839 - CCNA_02226 0.37 -0.1 2,374,854 + CCNA_02226 0.40 +0.5 2,374,860 - CCNA_02226 0.42 -0.6 2,374,881 - CCNA_02226 0.48 +1.3 2,374,902 + CCNA_02226 0.53 -0.7 2,374,911 - CCNA_02226 0.56 -0.3 2,374,945 + CCNA_02226 0.65 -0.5 2,374,953 - CCNA_02226 0.67 +0.2 2,374,953 - CCNA_02226 0.67 -0.2 2,374,977 + CCNA_02226 0.73 +0.3 2,374,985 - CCNA_02226 0.75 -0.1 2,375,021 - CCNA_02226 0.85 +0.1 2,375,023 + CCNA_02226 0.85 -0.8 2,375,023 + CCNA_02226 0.85 +1.6 2,375,031 - CCNA_02226 0.87 -1.3 2,375,031 - CCNA_02226 0.87 +0.1 2,375,031 - CCNA_02226 0.87 -0.8 2,375,031 - CCNA_02226 0.87 +0.9 2,375,031 - CCNA_02226 0.87 +0.1 2,375,043 + +1.3 2,375,043 + +0.3 2,375,051 - -0.4 2,375,051 - -0.3 2,375,061 + -0.6 2,375,087 + -1.4 2,375,095 - -1.0 2,375,095 - -0.6 2,375,191 - +0.5 2,375,194 - +0.0 2,375,204 - CCNA_02227 0.11 +0.2 2,375,209 - CCNA_02227 0.11 +0.2 2,375,210 + CCNA_02227 0.11 +0.1 2,375,218 - CCNA_02227 0.12 -0.1 2,375,225 + CCNA_02227 0.13 +1.3 2,375,239 + CCNA_02227 0.15 -0.8 2,375,248 + CCNA_02227 0.16 -0.7 2,375,307 + CCNA_02227 0.23 -0.8 2,375,314 + CCNA_02227 0.23 -0.5 2,375,322 - CCNA_02227 0.24 +0.3 2,375,359 + CCNA_02227 0.29 -0.0 2,375,405 + CCNA_02227 0.34 -0.6 2,375,423 - CCNA_02227 0.36 -0.8 2,375,430 + CCNA_02227 0.37 +0.3 2,375,447 - CCNA_02227 0.39 -0.4 2,375,447 - CCNA_02227 0.39 +0.8 2,375,448 - CCNA_02227 0.39 +1.2 2,375,519 + CCNA_02227 0.47 -0.4 2,375,527 - CCNA_02227 0.48 -1.0 2,375,551 + CCNA_02227 0.51 +0.1 2,375,557 + CCNA_02227 0.51 +0.1 2,375,612 + CCNA_02227 0.58 +0.1 2,375,642 - CCNA_02227 0.61 +0.1
Or see this region's nucleotide sequence