Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02085 and CCNA_02086 overlap by 4 nucleotides CCNA_02086 and CCNA_02087 are separated by 169 nucleotides CCNA_02087 and CCNA_02088 are separated by 88 nucleotides CCNA_02088 and CCNA_02089 are separated by 4 nucleotides CCNA_02089 and CCNA_02090 overlap by 1 nucleotides
CCNA_02085: CCNA_02085 - anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase, at 2,234,353 to 2,235,390
_02085
CCNA_02086: CCNA_02086 - cell division protein FtsN, at 2,235,387 to 2,236,187
_02086
CCNA_02087: CCNA_02087 - deoxyguanosinetriphosphate triphosphohydrolase, at 2,236,357 to 2,237,541
_02087
CCNA_02088: CCNA_02088 - HesB protein family, at 2,237,630 to 2,237,962
_02088
CCNA_02089: CCNA_02089 - hypothetical protein, at 2,237,967 to 2,238,341
_02089
CCNA_02090: CCNA_02090 - exodeoxyribonuclease III, at 2,238,341 to 2,239,129
_02090
Position (kb)
2236
2237
2238 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2235.357 kb on - strand at 2235.357 kb on - strand at 2235.374 kb on + strand at 2236.227 kb on - strand at 2236.237 kb on + strand at 2236.252 kb on + strand at 2236.262 kb on + strand at 2236.265 kb on - strand at 2236.278 kb on + strand at 2236.286 kb on - strand at 2236.286 kb on - strand at 2236.295 kb on - strand at 2236.295 kb on - strand at 2236.310 kb on + strand at 2236.313 kb on + strand at 2236.318 kb on - strand at 2236.345 kb on + strand at 2236.348 kb on - strand at 2236.350 kb on + strand at 2236.368 kb on - strand at 2236.368 kb on - strand at 2236.376 kb on - strand at 2236.448 kb on - strand at 2236.465 kb on - strand at 2236.503 kb on + strand, within CCNA_02087 at 2236.542 kb on + strand, within CCNA_02087 at 2236.550 kb on - strand, within CCNA_02087 at 2236.559 kb on - strand, within CCNA_02087 at 2236.586 kb on + strand, within CCNA_02087 at 2236.586 kb on + strand, within CCNA_02087 at 2236.586 kb on + strand, within CCNA_02087 at 2236.594 kb on - strand, within CCNA_02087 at 2236.610 kb on + strand, within CCNA_02087 at 2236.618 kb on - strand, within CCNA_02087 at 2236.634 kb on + strand, within CCNA_02087 at 2236.659 kb on - strand, within CCNA_02087 at 2236.722 kb on + strand, within CCNA_02087 at 2236.725 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.808 kb on + strand, within CCNA_02087 at 2236.835 kb on + strand, within CCNA_02087 at 2236.838 kb on - strand, within CCNA_02087 at 2236.843 kb on - strand, within CCNA_02087 at 2236.861 kb on - strand, within CCNA_02087 at 2236.910 kb on - strand, within CCNA_02087 at 2236.912 kb on + strand, within CCNA_02087 at 2236.930 kb on + strand, within CCNA_02087 at 2236.937 kb on + strand, within CCNA_02087 at 2236.937 kb on + strand, within CCNA_02087 at 2236.938 kb on - strand, within CCNA_02087 at 2236.948 kb on + strand, within CCNA_02087 at 2236.951 kb on - strand, within CCNA_02087 at 2236.988 kb on - strand, within CCNA_02087 at 2237.018 kb on - strand, within CCNA_02087 at 2237.021 kb on + strand, within CCNA_02087 at 2237.029 kb on - strand, within CCNA_02087 at 2237.039 kb on - strand, within CCNA_02087 at 2237.083 kb on + strand, within CCNA_02087 at 2237.083 kb on + strand, within CCNA_02087 at 2237.083 kb on + strand, within CCNA_02087 at 2237.092 kb on - strand, within CCNA_02087 at 2237.096 kb on - strand, within CCNA_02087 at 2237.097 kb on - strand, within CCNA_02087 at 2237.097 kb on - strand, within CCNA_02087 at 2237.111 kb on - strand, within CCNA_02087 at 2237.116 kb on - strand, within CCNA_02087 at 2237.116 kb on - strand, within CCNA_02087 at 2237.118 kb on + strand, within CCNA_02087 at 2237.121 kb on - strand, within CCNA_02087 at 2237.137 kb on - strand, within CCNA_02087 at 2237.143 kb on + strand, within CCNA_02087 at 2237.144 kb on + strand, within CCNA_02087 at 2237.227 kb on + strand, within CCNA_02087 at 2237.227 kb on + strand, within CCNA_02087 at 2237.227 kb on + strand, within CCNA_02087 at 2237.228 kb on - strand, within CCNA_02087 at 2237.235 kb on - strand, within CCNA_02087 at 2237.235 kb on - strand, within CCNA_02087 at 2237.252 kb on + strand, within CCNA_02087 at 2237.259 kb on - strand, within CCNA_02087 at 2237.259 kb on - strand, within CCNA_02087 at 2237.283 kb on - strand, within CCNA_02087 at 2237.283 kb on - strand, within CCNA_02087 at 2237.283 kb on - strand, within CCNA_02087 at 2237.294 kb on - strand, within CCNA_02087 at 2237.319 kb on + strand, within CCNA_02087 at 2237.319 kb on + strand, within CCNA_02087 at 2237.327 kb on - strand, within CCNA_02087 at 2237.334 kb on - strand, within CCNA_02087 at 2237.334 kb on - strand, within CCNA_02087 at 2237.368 kb on + strand, within CCNA_02087 at 2237.371 kb on - strand, within CCNA_02087 at 2237.376 kb on - strand, within CCNA_02087 at 2237.413 kb on - strand, within CCNA_02087 at 2237.439 kb on + strand at 2237.439 kb on + strand at 2237.439 kb on + strand at 2237.439 kb on + strand at 2237.447 kb on - strand at 2237.447 kb on - strand at 2237.452 kb on + strand at 2237.463 kb on + strand at 2237.471 kb on - strand at 2237.529 kb on + strand at 2237.529 kb on - strand at 2237.539 kb on - strand at 2237.566 kb on + strand at 2237.573 kb on - strand at 2237.593 kb on - strand at 2237.599 kb on + strand at 2237.603 kb on - strand at 2237.607 kb on - strand at 2237.635 kb on - strand at 2237.635 kb on - strand at 2237.651 kb on - strand at 2237.682 kb on - strand, within CCNA_02088 at 2237.693 kb on + strand, within CCNA_02088 at 2237.706 kb on + strand, within CCNA_02088 at 2237.707 kb on - strand, within CCNA_02088 at 2237.714 kb on - strand, within CCNA_02088 at 2237.714 kb on - strand, within CCNA_02088 at 2237.714 kb on - strand, within CCNA_02088 at 2237.714 kb on - strand, within CCNA_02088 at 2237.736 kb on - strand, within CCNA_02088 at 2237.778 kb on + strand, within CCNA_02088 at 2237.794 kb on + strand, within CCNA_02088 at 2237.949 kb on + strand at 2237.978 kb on - strand at 2237.982 kb on + strand at 2238.007 kb on + strand, within CCNA_02089 at 2238.007 kb on + strand, within CCNA_02089 at 2238.007 kb on + strand, within CCNA_02089 at 2238.015 kb on - strand, within CCNA_02089 at 2238.018 kb on + strand, within CCNA_02089 at 2238.034 kb on + strand, within CCNA_02089 at 2238.042 kb on - strand, within CCNA_02089 at 2238.063 kb on - strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.146 kb on + strand, within CCNA_02089 at 2238.154 kb on - strand, within CCNA_02089 at 2238.174 kb on + strand, within CCNA_02089 at 2238.182 kb on - strand, within CCNA_02089 at 2238.182 kb on - strand, within CCNA_02089 at 2238.192 kb on + strand, within CCNA_02089 at 2238.200 kb on - strand, within CCNA_02089 at 2238.205 kb on - strand, within CCNA_02089 at 2238.252 kb on + strand, within CCNA_02089 at 2238.276 kb on + strand, within CCNA_02089 at 2238.306 kb on - strand at 2238.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,235,357 - -1.5 2,235,357 - -0.4 2,235,374 + -1.8 2,236,227 - +0.5 2,236,237 + -0.1 2,236,252 + +0.2 2,236,262 + -0.7 2,236,265 - -0.2 2,236,278 + +0.3 2,236,286 - +0.8 2,236,286 - +0.5 2,236,295 - +0.7 2,236,295 - +0.1 2,236,310 + -0.2 2,236,313 + -0.9 2,236,318 - +1.0 2,236,345 + +0.4 2,236,348 - -0.2 2,236,350 + -0.7 2,236,368 - -0.0 2,236,368 - +0.8 2,236,376 - +0.6 2,236,448 - +1.2 2,236,465 - -0.4 2,236,503 + CCNA_02087 0.12 -0.1 2,236,542 + CCNA_02087 0.16 +0.3 2,236,550 - CCNA_02087 0.16 -0.6 2,236,559 - CCNA_02087 0.17 +0.4 2,236,586 + CCNA_02087 0.19 -2.6 2,236,586 + CCNA_02087 0.19 +0.7 2,236,586 + CCNA_02087 0.19 -1.2 2,236,594 - CCNA_02087 0.20 -0.3 2,236,610 + CCNA_02087 0.21 -1.2 2,236,618 - CCNA_02087 0.22 -0.4 2,236,634 + CCNA_02087 0.23 -2.5 2,236,659 - CCNA_02087 0.25 -0.0 2,236,722 + CCNA_02087 0.31 -1.3 2,236,725 - CCNA_02087 0.31 -0.1 2,236,754 - CCNA_02087 0.34 +0.3 2,236,754 - CCNA_02087 0.34 -0.5 2,236,754 - CCNA_02087 0.34 +1.2 2,236,754 - CCNA_02087 0.34 +0.3 2,236,772 + CCNA_02087 0.35 -1.5 2,236,772 + CCNA_02087 0.35 -0.2 2,236,772 + CCNA_02087 0.35 -2.0 2,236,772 + CCNA_02087 0.35 -1.2 2,236,780 - CCNA_02087 0.36 -0.1 2,236,780 - CCNA_02087 0.36 +0.8 2,236,780 - CCNA_02087 0.36 -0.5 2,236,780 - CCNA_02087 0.36 +0.0 2,236,808 + CCNA_02087 0.38 +1.1 2,236,835 + CCNA_02087 0.40 -0.7 2,236,838 - CCNA_02087 0.41 +0.5 2,236,843 - CCNA_02087 0.41 -0.7 2,236,861 - CCNA_02087 0.43 -2.2 2,236,910 - CCNA_02087 0.47 +0.4 2,236,912 + CCNA_02087 0.47 +0.4 2,236,930 + CCNA_02087 0.48 +0.5 2,236,937 + CCNA_02087 0.49 +0.7 2,236,937 + CCNA_02087 0.49 -0.1 2,236,938 - CCNA_02087 0.49 +0.9 2,236,948 + CCNA_02087 0.50 -0.7 2,236,951 - CCNA_02087 0.50 -0.0 2,236,988 - CCNA_02087 0.53 +0.3 2,237,018 - CCNA_02087 0.56 -0.1 2,237,021 + CCNA_02087 0.56 -0.5 2,237,029 - CCNA_02087 0.57 +0.1 2,237,039 - CCNA_02087 0.58 +0.8 2,237,083 + CCNA_02087 0.61 -1.1 2,237,083 + CCNA_02087 0.61 +0.8 2,237,083 + CCNA_02087 0.61 -0.6 2,237,092 - CCNA_02087 0.62 -0.7 2,237,096 - CCNA_02087 0.62 -0.4 2,237,097 - CCNA_02087 0.62 -1.5 2,237,097 - CCNA_02087 0.62 +0.1 2,237,111 - CCNA_02087 0.64 +0.1 2,237,116 - CCNA_02087 0.64 -0.9 2,237,116 - CCNA_02087 0.64 +0.5 2,237,118 + CCNA_02087 0.64 -0.4 2,237,121 - CCNA_02087 0.64 +0.2 2,237,137 - CCNA_02087 0.66 -0.0 2,237,143 + CCNA_02087 0.66 -0.7 2,237,144 + CCNA_02087 0.66 -0.4 2,237,227 + CCNA_02087 0.73 -0.2 2,237,227 + CCNA_02087 0.73 +0.3 2,237,227 + CCNA_02087 0.73 -0.6 2,237,228 - CCNA_02087 0.74 +0.5 2,237,235 - CCNA_02087 0.74 +1.2 2,237,235 - CCNA_02087 0.74 +1.5 2,237,252 + CCNA_02087 0.76 -1.2 2,237,259 - CCNA_02087 0.76 +0.3 2,237,259 - CCNA_02087 0.76 +0.3 2,237,283 - CCNA_02087 0.78 +0.2 2,237,283 - CCNA_02087 0.78 +0.8 2,237,283 - CCNA_02087 0.78 +0.2 2,237,294 - CCNA_02087 0.79 -0.1 2,237,319 + CCNA_02087 0.81 -0.6 2,237,319 + CCNA_02087 0.81 -0.1 2,237,327 - CCNA_02087 0.82 -0.1 2,237,334 - CCNA_02087 0.82 -0.7 2,237,334 - CCNA_02087 0.82 +0.1 2,237,368 + CCNA_02087 0.85 -0.8 2,237,371 - CCNA_02087 0.86 +0.2 2,237,376 - CCNA_02087 0.86 -0.0 2,237,413 - CCNA_02087 0.89 -0.5 2,237,439 + -0.0 2,237,439 + -0.8 2,237,439 + -1.0 2,237,439 + -0.3 2,237,447 - +0.8 2,237,447 - +0.2 2,237,452 + +0.4 2,237,463 + -0.3 2,237,471 - -0.1 2,237,529 + -0.3 2,237,529 - +1.7 2,237,539 - -0.1 2,237,566 + -2.9 2,237,573 - -0.6 2,237,593 - -0.8 2,237,599 + +0.3 2,237,603 - +0.3 2,237,607 - -0.3 2,237,635 - -0.5 2,237,635 - +0.1 2,237,651 - -0.6 2,237,682 - CCNA_02088 0.16 -0.7 2,237,693 + CCNA_02088 0.19 +0.4 2,237,706 + CCNA_02088 0.23 -0.2 2,237,707 - CCNA_02088 0.23 +1.0 2,237,714 - CCNA_02088 0.25 +0.9 2,237,714 - CCNA_02088 0.25 -1.0 2,237,714 - CCNA_02088 0.25 -0.0 2,237,714 - CCNA_02088 0.25 +0.1 2,237,736 - CCNA_02088 0.32 -0.2 2,237,778 + CCNA_02088 0.44 -0.6 2,237,794 + CCNA_02088 0.49 -1.2 2,237,949 + +0.4 2,237,978 - -0.9 2,237,982 + -3.4 2,238,007 + CCNA_02089 0.11 +0.2 2,238,007 + CCNA_02089 0.11 -0.1 2,238,007 + CCNA_02089 0.11 +0.5 2,238,015 - CCNA_02089 0.13 -0.6 2,238,018 + CCNA_02089 0.14 +0.5 2,238,034 + CCNA_02089 0.18 +0.4 2,238,042 - CCNA_02089 0.20 -0.0 2,238,063 - CCNA_02089 0.26 +0.3 2,238,103 + CCNA_02089 0.36 -0.3 2,238,103 + CCNA_02089 0.36 +0.4 2,238,103 + CCNA_02089 0.36 -0.6 2,238,103 + CCNA_02089 0.36 -0.1 2,238,103 + CCNA_02089 0.36 -0.0 2,238,103 + CCNA_02089 0.36 -0.7 2,238,103 + CCNA_02089 0.36 -0.5 2,238,103 + CCNA_02089 0.36 +0.1 2,238,103 + CCNA_02089 0.36 -0.2 2,238,103 + CCNA_02089 0.36 +0.3 2,238,103 + CCNA_02089 0.36 +0.8 2,238,103 + CCNA_02089 0.36 +0.5 2,238,103 + CCNA_02089 0.36 -0.3 2,238,103 + CCNA_02089 0.36 -0.2 2,238,103 + CCNA_02089 0.36 +0.1 2,238,103 + CCNA_02089 0.36 +1.1 2,238,111 - CCNA_02089 0.38 -0.2 2,238,111 - CCNA_02089 0.38 +0.2 2,238,111 - CCNA_02089 0.38 -0.7 2,238,111 - CCNA_02089 0.38 -0.3 2,238,111 - CCNA_02089 0.38 -0.3 2,238,111 - CCNA_02089 0.38 -0.1 2,238,146 + CCNA_02089 0.48 -0.8 2,238,154 - CCNA_02089 0.50 +1.0 2,238,174 + CCNA_02089 0.55 +0.5 2,238,182 - CCNA_02089 0.57 -1.9 2,238,182 - CCNA_02089 0.57 +0.2 2,238,192 + CCNA_02089 0.60 -0.3 2,238,200 - CCNA_02089 0.62 +0.6 2,238,205 - CCNA_02089 0.63 +1.2 2,238,252 + CCNA_02089 0.76 -0.1 2,238,276 + CCNA_02089 0.82 -0.3 2,238,306 - +1.8 2,238,335 - +0.7
Or see this region's nucleotide sequence