Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02068 and CCNA_02069 overlap by 1 nucleotides CCNA_02069 and CCNA_02070 are separated by 0 nucleotides CCNA_02070 and CCNA_02071 are separated by 157 nucleotides CCNA_02071 and CCNA_02072 are separated by 120 nucleotides
CCNA_02068: CCNA_02068 - Mth938-like membrane protein, at 2,219,512 to 2,219,865
_02068
CCNA_02069: CCNA_02069 - protein translocase subunit secF, at 2,219,865 to 2,220,830
_02069
CCNA_02070: CCNA_02070 - protein translocase subunit secD, at 2,220,831 to 2,222,429
_02070
CCNA_02071: CCNA_02071 - protein translocase subunit YajC, at 2,222,587 to 2,222,898
_02071
CCNA_02072: CCNA_02072 - ATP-dependent protease subunit, at 2,223,019 to 2,223,858
_02072
Position (kb)
2220
2221
2222
2223 Strain fitness (log2 ratio)
-1
0
1
2 at 2220.821 kb on - strand at 2223.005 kb on - strand at 2223.018 kb on - strand at 2223.069 kb on - strand at 2223.102 kb on + strand at 2223.184 kb on - strand, within CCNA_02072 at 2223.270 kb on + strand, within CCNA_02072 at 2223.270 kb on + strand, within CCNA_02072 at 2223.270 kb on + strand, within CCNA_02072 at 2223.270 kb on + strand, within CCNA_02072 at 2223.270 kb on + strand, within CCNA_02072 at 2223.278 kb on - strand, within CCNA_02072 at 2223.278 kb on - strand, within CCNA_02072 at 2223.278 kb on - strand, within CCNA_02072 at 2223.278 kb on - strand, within CCNA_02072 at 2223.278 kb on - strand, within CCNA_02072 at 2223.341 kb on + strand, within CCNA_02072 at 2223.341 kb on + strand, within CCNA_02072 at 2223.344 kb on - strand, within CCNA_02072 at 2223.349 kb on - strand, within CCNA_02072 at 2223.368 kb on + strand, within CCNA_02072
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,220,821 - +0.4 2,223,005 - -0.2 2,223,018 - -1.4 2,223,069 - +2.1 2,223,102 + +0.7 2,223,184 - CCNA_02072 0.20 -0.3 2,223,270 + CCNA_02072 0.30 +0.7 2,223,270 + CCNA_02072 0.30 +0.0 2,223,270 + CCNA_02072 0.30 -0.6 2,223,270 + CCNA_02072 0.30 +0.1 2,223,270 + CCNA_02072 0.30 -1.1 2,223,278 - CCNA_02072 0.31 -1.7 2,223,278 - CCNA_02072 0.31 +0.4 2,223,278 - CCNA_02072 0.31 -0.0 2,223,278 - CCNA_02072 0.31 -0.9 2,223,278 - CCNA_02072 0.31 -0.2 2,223,341 + CCNA_02072 0.38 +0.5 2,223,341 + CCNA_02072 0.38 -0.4 2,223,344 - CCNA_02072 0.39 -0.2 2,223,349 - CCNA_02072 0.39 -0.2 2,223,368 + CCNA_02072 0.42 +0.6
Or see this region's nucleotide sequence