Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01919

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01918 and CCNA_01919 are separated by 81 nucleotidesCCNA_01919 and CCNA_01920 are separated by 120 nucleotides CCNA_01918: CCNA_01918 - cyclic di-GMP effector protein PopA, at 2,061,343 to 2,062,668 _01918 CCNA_01919: CCNA_01919 - FrnE protein, at 2,062,750 to 2,063,394 _01919 CCNA_01920: CCNA_01920 - transcription-repair coupling factor Mfd, at 2,063,515 to 2,066,982 _01920 Position (kb) 2062 2063 2064Strain fitness (log2 ratio) -1 0 1 2 3at 2061.825 kb on + strand, within CCNA_01918at 2061.837 kb on + strand, within CCNA_01918at 2061.837 kb on + strand, within CCNA_01918at 2061.837 kb on + strand, within CCNA_01918at 2061.845 kb on - strand, within CCNA_01918at 2061.860 kb on + strand, within CCNA_01918at 2061.868 kb on - strand, within CCNA_01918at 2061.895 kb on + strand, within CCNA_01918at 2061.934 kb on + strand, within CCNA_01918at 2062.023 kb on + strand, within CCNA_01918at 2062.023 kb on + strand, within CCNA_01918at 2062.031 kb on - strand, within CCNA_01918at 2062.031 kb on - strand, within CCNA_01918at 2062.044 kb on - strand, within CCNA_01918at 2062.064 kb on - strand, within CCNA_01918at 2062.068 kb on - strand, within CCNA_01918at 2062.196 kb on + strand, within CCNA_01918at 2062.196 kb on + strand, within CCNA_01918at 2062.209 kb on - strand, within CCNA_01918at 2062.329 kb on + strand, within CCNA_01918at 2062.466 kb on - strand, within CCNA_01918at 2062.476 kb on + strand, within CCNA_01918at 2062.477 kb on - strand, within CCNA_01918at 2062.543 kb on + strandat 2062.596 kb on - strandat 2062.671 kb on - strandat 2062.711 kb on - strandat 2062.711 kb on - strandat 2062.913 kb on - strand, within CCNA_01919at 2062.930 kb on + strand, within CCNA_01919at 2062.947 kb on - strand, within CCNA_01919at 2062.965 kb on + strand, within CCNA_01919at 2062.971 kb on - strand, within CCNA_01919at 2062.973 kb on - strand, within CCNA_01919at 2062.973 kb on - strand, within CCNA_01919at 2062.973 kb on - strand, within CCNA_01919at 2062.989 kb on + strand, within CCNA_01919at 2062.989 kb on + strand, within CCNA_01919at 2062.997 kb on - strand, within CCNA_01919at 2063.017 kb on + strand, within CCNA_01919at 2063.052 kb on + strand, within CCNA_01919at 2063.052 kb on + strand, within CCNA_01919at 2063.060 kb on - strand, within CCNA_01919at 2063.068 kb on + strand, within CCNA_01919at 2063.086 kb on - strand, within CCNA_01919at 2063.103 kb on + strand, within CCNA_01919at 2063.117 kb on - strand, within CCNA_01919at 2063.138 kb on - strand, within CCNA_01919at 2063.154 kb on - strand, within CCNA_01919at 2063.154 kb on - strand, within CCNA_01919at 2063.199 kb on + strand, within CCNA_01919at 2063.237 kb on - strand, within CCNA_01919at 2063.237 kb on - strand, within CCNA_01919at 2063.268 kb on + strand, within CCNA_01919at 2063.278 kb on + strand, within CCNA_01919at 2063.278 kb on + strand, within CCNA_01919at 2063.382 kb on - strandat 2063.418 kb on - strandat 2063.468 kb on - strandat 2063.506 kb on + strandat 2063.514 kb on - strandat 2063.559 kb on - strandat 2063.616 kb on - strandat 2063.616 kb on - strandat 2063.662 kb on - strandat 2063.681 kb on - strandat 2063.691 kb on + strandat 2063.747 kb on - strandat 2063.782 kb on - strandat 2063.833 kb on + strandat 2063.841 kb on - strandat 2063.841 kb on - strandat 2063.864 kb on + strand, within CCNA_01920at 2063.864 kb on + strand, within CCNA_01920at 2063.872 kb on - strand, within CCNA_01920at 2063.872 kb on - strand, within CCNA_01920at 2064.050 kb on + strand, within CCNA_01920at 2064.093 kb on - strand, within CCNA_01920at 2064.111 kb on + strand, within CCNA_01920at 2064.111 kb on + strand, within CCNA_01920at 2064.111 kb on + strand, within CCNA_01920at 2064.111 kb on + strand, within CCNA_01920at 2064.111 kb on + strand, within CCNA_01920at 2064.111 kb on + strand, within CCNA_01920at 2064.119 kb on - strand, within CCNA_01920at 2064.127 kb on + strand, within CCNA_01920at 2064.132 kb on + strand, within CCNA_01920at 2064.132 kb on + strand, within CCNA_01920at 2064.140 kb on - strand, within CCNA_01920at 2064.205 kb on + strand, within CCNA_01920at 2064.205 kb on - strand, within CCNA_01920at 2064.272 kb on + strand, within CCNA_01920at 2064.278 kb on + strand, within CCNA_01920at 2064.320 kb on + strand, within CCNA_01920at 2064.337 kb on + strand, within CCNA_01920at 2064.388 kb on - strand, within CCNA_01920

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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2,061,825 + CCNA_01918 0.36 +0.2
2,061,837 + CCNA_01918 0.37 -0.2
2,061,837 + CCNA_01918 0.37 +0.5
2,061,837 + CCNA_01918 0.37 +0.5
2,061,845 - CCNA_01918 0.38 +0.1
2,061,860 + CCNA_01918 0.39 +0.2
2,061,868 - CCNA_01918 0.40 -0.7
2,061,895 + CCNA_01918 0.42 +0.9
2,061,934 + CCNA_01918 0.45 -1.1
2,062,023 + CCNA_01918 0.51 +1.1
2,062,023 + CCNA_01918 0.51 +0.2
2,062,031 - CCNA_01918 0.52 +0.3
2,062,031 - CCNA_01918 0.52 -0.6
2,062,044 - CCNA_01918 0.53 -0.2
2,062,064 - CCNA_01918 0.54 -1.0
2,062,068 - CCNA_01918 0.55 -0.2
2,062,196 + CCNA_01918 0.64 -0.0
2,062,196 + CCNA_01918 0.64 -0.4
2,062,209 - CCNA_01918 0.65 +0.8
2,062,329 + CCNA_01918 0.74 +0.3
2,062,466 - CCNA_01918 0.85 -0.7
2,062,476 + CCNA_01918 0.85 -0.3
2,062,477 - CCNA_01918 0.86 -1.3
2,062,543 + +1.1
2,062,596 - -0.3
2,062,671 - -0.3
2,062,711 - -0.1
2,062,711 - -0.2
2,062,913 - CCNA_01919 0.25 -0.1
2,062,930 + CCNA_01919 0.28 +1.0
2,062,947 - CCNA_01919 0.31 -0.5
2,062,965 + CCNA_01919 0.33 +0.3
2,062,971 - CCNA_01919 0.34 -0.8
2,062,973 - CCNA_01919 0.35 +0.2
2,062,973 - CCNA_01919 0.35 -0.2
2,062,973 - CCNA_01919 0.35 +3.7
2,062,989 + CCNA_01919 0.37 +0.6
2,062,989 + CCNA_01919 0.37 -0.1
2,062,997 - CCNA_01919 0.38 -0.7
2,063,017 + CCNA_01919 0.41 +0.4
2,063,052 + CCNA_01919 0.47 -0.2
2,063,052 + CCNA_01919 0.47 +1.3
2,063,060 - CCNA_01919 0.48 -0.6
2,063,068 + CCNA_01919 0.49 +0.5
2,063,086 - CCNA_01919 0.52 +0.3
2,063,103 + CCNA_01919 0.55 +1.8
2,063,117 - CCNA_01919 0.57 +0.1
2,063,138 - CCNA_01919 0.60 -0.2
2,063,154 - CCNA_01919 0.63 -0.5
2,063,154 - CCNA_01919 0.63 -0.5
2,063,199 + CCNA_01919 0.70 -0.2
2,063,237 - CCNA_01919 0.76 -1.1
2,063,237 - CCNA_01919 0.76 +0.6
2,063,268 + CCNA_01919 0.80 -0.4
2,063,278 + CCNA_01919 0.82 +0.6
2,063,278 + CCNA_01919 0.82 +0.4
2,063,382 - +1.2
2,063,418 - +0.4
2,063,468 - +1.0
2,063,506 + -0.5
2,063,514 - +0.3
2,063,559 - +0.5
2,063,616 - +0.6
2,063,616 - +0.9
2,063,662 - +0.5
2,063,681 - -0.3
2,063,691 + +0.1
2,063,747 - -0.0
2,063,782 - -0.9
2,063,833 + +0.6
2,063,841 - +0.5
2,063,841 - +1.2
2,063,864 + CCNA_01920 0.10 -0.5
2,063,864 + CCNA_01920 0.10 +0.0
2,063,872 - CCNA_01920 0.10 +0.0
2,063,872 - CCNA_01920 0.10 -0.8
2,064,050 + CCNA_01920 0.15 +0.2
2,064,093 - CCNA_01920 0.17 +0.2
2,064,111 + CCNA_01920 0.17 +0.1
2,064,111 + CCNA_01920 0.17 -0.4
2,064,111 + CCNA_01920 0.17 -1.1
2,064,111 + CCNA_01920 0.17 -0.2
2,064,111 + CCNA_01920 0.17 +0.2
2,064,111 + CCNA_01920 0.17 +1.1
2,064,119 - CCNA_01920 0.17 +0.7
2,064,127 + CCNA_01920 0.18 -0.9
2,064,132 + CCNA_01920 0.18 +0.2
2,064,132 + CCNA_01920 0.18 +2.5
2,064,140 - CCNA_01920 0.18 +0.1
2,064,205 + CCNA_01920 0.20 -0.4
2,064,205 - CCNA_01920 0.20 -0.1
2,064,272 + CCNA_01920 0.22 +1.6
2,064,278 + CCNA_01920 0.22 -0.5
2,064,320 + CCNA_01920 0.23 -1.0
2,064,337 + CCNA_01920 0.24 +0.2
2,064,388 - CCNA_01920 0.25 +0.6

Or see this region's nucleotide sequence