Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01815 and CCNA_01816 are separated by 64 nucleotides CCNA_01816 and CCNA_01817 overlap by 4 nucleotides
CCNA_01815: CCNA_01815 - nitrogen assimilation regulatory protein NtrC, at 1,939,826 to 1,941,247
_01815
CCNA_01816: CCNA_01816 - nitrogen regulation protein ntrY, at 1,941,312 to 1,943,555
_01816
CCNA_01817: CCNA_01817 - nitrogen assimilation regulatory protein ntrX, at 1,943,552 to 1,944,940
_01817
Position (kb)
1941
1942
1943
1944 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1941.224 kb on + strand at 1941.294 kb on + strand at 1941.311 kb on + strand at 1941.322 kb on - strand at 1941.324 kb on - strand at 1941.396 kb on + strand at 1941.461 kb on + strand at 1941.480 kb on + strand at 1941.502 kb on + strand at 1941.596 kb on + strand, within CCNA_01816 at 1941.596 kb on + strand, within CCNA_01816 at 1941.604 kb on - strand, within CCNA_01816 at 1941.604 kb on - strand, within CCNA_01816 at 1941.631 kb on + strand, within CCNA_01816 at 1941.634 kb on - strand, within CCNA_01816 at 1941.639 kb on - strand, within CCNA_01816 at 1941.683 kb on + strand, within CCNA_01816 at 1941.683 kb on + strand, within CCNA_01816 at 1941.683 kb on + strand, within CCNA_01816 at 1941.691 kb on - strand, within CCNA_01816 at 1941.691 kb on - strand, within CCNA_01816 at 1941.734 kb on + strand, within CCNA_01816 at 1941.742 kb on - strand, within CCNA_01816 at 1941.742 kb on - strand, within CCNA_01816 at 1941.742 kb on - strand, within CCNA_01816 at 1941.742 kb on - strand, within CCNA_01816 at 1941.742 kb on - strand, within CCNA_01816 at 1941.742 kb on - strand, within CCNA_01816 at 1941.831 kb on + strand, within CCNA_01816 at 1941.840 kb on - strand, within CCNA_01816 at 1941.847 kb on + strand, within CCNA_01816 at 1941.863 kb on + strand, within CCNA_01816 at 1941.884 kb on + strand, within CCNA_01816 at 1941.900 kb on + strand, within CCNA_01816 at 1941.905 kb on + strand, within CCNA_01816 at 1941.905 kb on + strand, within CCNA_01816 at 1941.905 kb on + strand, within CCNA_01816 at 1942.057 kb on + strand, within CCNA_01816 at 1942.062 kb on + strand, within CCNA_01816 at 1942.062 kb on + strand, within CCNA_01816 at 1942.075 kb on - strand, within CCNA_01816 at 1942.085 kb on + strand, within CCNA_01816 at 1942.085 kb on + strand, within CCNA_01816 at 1942.245 kb on - strand, within CCNA_01816 at 1942.245 kb on - strand, within CCNA_01816 at 1942.253 kb on + strand, within CCNA_01816 at 1942.306 kb on - strand, within CCNA_01816 at 1942.370 kb on + strand, within CCNA_01816 at 1942.392 kb on + strand, within CCNA_01816 at 1942.409 kb on + strand, within CCNA_01816 at 1942.409 kb on + strand, within CCNA_01816 at 1942.446 kb on - strand, within CCNA_01816 at 1942.514 kb on + strand, within CCNA_01816 at 1942.593 kb on + strand, within CCNA_01816 at 1942.601 kb on - strand, within CCNA_01816 at 1942.703 kb on + strand, within CCNA_01816 at 1942.731 kb on + strand, within CCNA_01816 at 1942.776 kb on + strand, within CCNA_01816 at 1942.844 kb on - strand, within CCNA_01816 at 1942.947 kb on - strand, within CCNA_01816 at 1943.012 kb on + strand, within CCNA_01816 at 1943.054 kb on + strand, within CCNA_01816 at 1943.085 kb on + strand, within CCNA_01816 at 1943.182 kb on + strand, within CCNA_01816 at 1943.182 kb on + strand, within CCNA_01816 at 1943.200 kb on - strand, within CCNA_01816 at 1943.207 kb on - strand, within CCNA_01816 at 1943.269 kb on - strand, within CCNA_01816 at 1943.274 kb on + strand, within CCNA_01816 at 1943.274 kb on + strand, within CCNA_01816 at 1943.308 kb on - strand, within CCNA_01816 at 1943.323 kb on - strand, within CCNA_01816 at 1943.394 kb on + strand at 1943.395 kb on + strand at 1943.395 kb on + strand at 1943.395 kb on - strand at 1943.408 kb on - strand at 1943.408 kb on - strand at 1943.408 kb on - strand at 1943.451 kb on - strand at 1943.455 kb on - strand at 1943.487 kb on + strand at 1943.511 kb on + strand at 1943.526 kb on + strand at 1943.526 kb on + strand at 1943.534 kb on - strand at 1943.660 kb on - strand at 1943.738 kb on - strand, within CCNA_01817 at 1943.739 kb on + strand, within CCNA_01817 at 1943.739 kb on + strand, within CCNA_01817 at 1943.739 kb on + strand, within CCNA_01817 at 1943.758 kb on + strand, within CCNA_01817 at 1943.759 kb on + strand, within CCNA_01817 at 1943.766 kb on - strand, within CCNA_01817 at 1943.814 kb on - strand, within CCNA_01817 at 1943.966 kb on - strand, within CCNA_01817 at 1944.003 kb on - strand, within CCNA_01817 at 1944.100 kb on - strand, within CCNA_01817 at 1944.130 kb on - strand, within CCNA_01817 at 1944.290 kb on + strand, within CCNA_01817 at 1944.298 kb on - strand, within CCNA_01817 at 1944.327 kb on - strand, within CCNA_01817 at 1944.455 kb on - strand, within CCNA_01817 at 1944.548 kb on + strand, within CCNA_01817
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,941,224 + -0.8 1,941,294 + -0.3 1,941,311 + +0.0 1,941,322 - -0.5 1,941,324 - +0.3 1,941,396 + +0.5 1,941,461 + +0.1 1,941,480 + +0.4 1,941,502 + -0.3 1,941,596 + CCNA_01816 0.13 +0.5 1,941,596 + CCNA_01816 0.13 +0.5 1,941,604 - CCNA_01816 0.13 -1.0 1,941,604 - CCNA_01816 0.13 +0.3 1,941,631 + CCNA_01816 0.14 -0.2 1,941,634 - CCNA_01816 0.14 +1.5 1,941,639 - CCNA_01816 0.15 +0.6 1,941,683 + CCNA_01816 0.17 +0.7 1,941,683 + CCNA_01816 0.17 +0.4 1,941,683 + CCNA_01816 0.17 +0.4 1,941,691 - CCNA_01816 0.17 -0.4 1,941,691 - CCNA_01816 0.17 +0.1 1,941,734 + CCNA_01816 0.19 +1.2 1,941,742 - CCNA_01816 0.19 +0.1 1,941,742 - CCNA_01816 0.19 -1.2 1,941,742 - CCNA_01816 0.19 -0.1 1,941,742 - CCNA_01816 0.19 -0.8 1,941,742 - CCNA_01816 0.19 -0.4 1,941,742 - CCNA_01816 0.19 -0.8 1,941,831 + CCNA_01816 0.23 -0.9 1,941,840 - CCNA_01816 0.24 -0.7 1,941,847 + CCNA_01816 0.24 -0.3 1,941,863 + CCNA_01816 0.25 +0.1 1,941,884 + CCNA_01816 0.25 +1.8 1,941,900 + CCNA_01816 0.26 +0.7 1,941,905 + CCNA_01816 0.26 +0.2 1,941,905 + CCNA_01816 0.26 -0.5 1,941,905 + CCNA_01816 0.26 +0.9 1,942,057 + CCNA_01816 0.33 -0.1 1,942,062 + CCNA_01816 0.33 -1.9 1,942,062 + CCNA_01816 0.33 +0.9 1,942,075 - CCNA_01816 0.34 -0.7 1,942,085 + CCNA_01816 0.34 +0.4 1,942,085 + CCNA_01816 0.34 +1.1 1,942,245 - CCNA_01816 0.42 -1.4 1,942,245 - CCNA_01816 0.42 -0.1 1,942,253 + CCNA_01816 0.42 -0.1 1,942,306 - CCNA_01816 0.44 -0.6 1,942,370 + CCNA_01816 0.47 +0.5 1,942,392 + CCNA_01816 0.48 +0.6 1,942,409 + CCNA_01816 0.49 +0.2 1,942,409 + CCNA_01816 0.49 +0.2 1,942,446 - CCNA_01816 0.51 -1.3 1,942,514 + CCNA_01816 0.54 +0.9 1,942,593 + CCNA_01816 0.57 +0.1 1,942,601 - CCNA_01816 0.57 -0.1 1,942,703 + CCNA_01816 0.62 +0.5 1,942,731 + CCNA_01816 0.63 +0.7 1,942,776 + CCNA_01816 0.65 +0.5 1,942,844 - CCNA_01816 0.68 +1.5 1,942,947 - CCNA_01816 0.73 -0.8 1,943,012 + CCNA_01816 0.76 +0.3 1,943,054 + CCNA_01816 0.78 +0.5 1,943,085 + CCNA_01816 0.79 +0.7 1,943,182 + CCNA_01816 0.83 +0.3 1,943,182 + CCNA_01816 0.83 +1.2 1,943,200 - CCNA_01816 0.84 -1.1 1,943,207 - CCNA_01816 0.84 +0.5 1,943,269 - CCNA_01816 0.87 -0.2 1,943,274 + CCNA_01816 0.87 -0.5 1,943,274 + CCNA_01816 0.87 +0.1 1,943,308 - CCNA_01816 0.89 +0.6 1,943,323 - CCNA_01816 0.90 +0.5 1,943,394 + -0.4 1,943,395 + +0.5 1,943,395 + +0.9 1,943,395 - -0.6 1,943,408 - +1.0 1,943,408 - +0.7 1,943,408 - +0.5 1,943,451 - -0.1 1,943,455 - -1.1 1,943,487 + -0.6 1,943,511 + +0.5 1,943,526 + -0.8 1,943,526 + -0.5 1,943,534 - -0.1 1,943,660 - +0.1 1,943,738 - CCNA_01817 0.13 -0.1 1,943,739 + CCNA_01817 0.13 -0.9 1,943,739 + CCNA_01817 0.13 +0.4 1,943,739 + CCNA_01817 0.13 -1.1 1,943,758 + CCNA_01817 0.15 -0.8 1,943,759 + CCNA_01817 0.15 -0.5 1,943,766 - CCNA_01817 0.15 +0.9 1,943,814 - CCNA_01817 0.19 +0.9 1,943,966 - CCNA_01817 0.30 +0.1 1,944,003 - CCNA_01817 0.32 -1.5 1,944,100 - CCNA_01817 0.39 +0.6 1,944,130 - CCNA_01817 0.42 -0.8 1,944,290 + CCNA_01817 0.53 -1.6 1,944,298 - CCNA_01817 0.54 -0.7 1,944,327 - CCNA_01817 0.56 -0.1 1,944,455 - CCNA_01817 0.65 +1.2 1,944,548 + CCNA_01817 0.72 -0.3
Or see this region's nucleotide sequence