Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01816

Experiment: PYE no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01815 and CCNA_01816 are separated by 64 nucleotidesCCNA_01816 and CCNA_01817 overlap by 4 nucleotides CCNA_01815: CCNA_01815 - nitrogen assimilation regulatory protein NtrC, at 1,939,826 to 1,941,247 _01815 CCNA_01816: CCNA_01816 - nitrogen regulation protein ntrY, at 1,941,312 to 1,943,555 _01816 CCNA_01817: CCNA_01817 - nitrogen assimilation regulatory protein ntrX, at 1,943,552 to 1,944,940 _01817 Position (kb) 1941 1942 1943 1944Strain fitness (log2 ratio) -2 -1 0 1 2at 1941.224 kb on + strandat 1941.294 kb on + strandat 1941.311 kb on + strandat 1941.322 kb on - strandat 1941.324 kb on - strandat 1941.396 kb on + strandat 1941.461 kb on + strandat 1941.480 kb on + strandat 1941.502 kb on + strandat 1941.596 kb on + strand, within CCNA_01816at 1941.596 kb on + strand, within CCNA_01816at 1941.604 kb on - strand, within CCNA_01816at 1941.604 kb on - strand, within CCNA_01816at 1941.631 kb on + strand, within CCNA_01816at 1941.634 kb on - strand, within CCNA_01816at 1941.639 kb on - strand, within CCNA_01816at 1941.683 kb on + strand, within CCNA_01816at 1941.683 kb on + strand, within CCNA_01816at 1941.683 kb on + strand, within CCNA_01816at 1941.691 kb on - strand, within CCNA_01816at 1941.691 kb on - strand, within CCNA_01816at 1941.734 kb on + strand, within CCNA_01816at 1941.742 kb on - strand, within CCNA_01816at 1941.742 kb on - strand, within CCNA_01816at 1941.742 kb on - strand, within CCNA_01816at 1941.742 kb on - strand, within CCNA_01816at 1941.742 kb on - strand, within CCNA_01816at 1941.742 kb on - strand, within CCNA_01816at 1941.831 kb on + strand, within CCNA_01816at 1941.840 kb on - strand, within CCNA_01816at 1941.847 kb on + strand, within CCNA_01816at 1941.863 kb on + strand, within CCNA_01816at 1941.884 kb on + strand, within CCNA_01816at 1941.900 kb on + strand, within CCNA_01816at 1941.905 kb on + strand, within CCNA_01816at 1941.905 kb on + strand, within CCNA_01816at 1941.905 kb on + strand, within CCNA_01816at 1942.057 kb on + strand, within CCNA_01816at 1942.062 kb on + strand, within CCNA_01816at 1942.062 kb on + strand, within CCNA_01816at 1942.075 kb on - strand, within CCNA_01816at 1942.085 kb on + strand, within CCNA_01816at 1942.085 kb on + strand, within CCNA_01816at 1942.245 kb on - strand, within CCNA_01816at 1942.245 kb on - strand, within CCNA_01816at 1942.253 kb on + strand, within CCNA_01816at 1942.306 kb on - strand, within CCNA_01816at 1942.370 kb on + strand, within CCNA_01816at 1942.392 kb on + strand, within CCNA_01816at 1942.409 kb on + strand, within CCNA_01816at 1942.409 kb on + strand, within CCNA_01816at 1942.446 kb on - strand, within CCNA_01816at 1942.514 kb on + strand, within CCNA_01816at 1942.593 kb on + strand, within CCNA_01816at 1942.601 kb on - strand, within CCNA_01816at 1942.703 kb on + strand, within CCNA_01816at 1942.731 kb on + strand, within CCNA_01816at 1942.776 kb on + strand, within CCNA_01816at 1942.844 kb on - strand, within CCNA_01816at 1942.947 kb on - strand, within CCNA_01816at 1943.012 kb on + strand, within CCNA_01816at 1943.054 kb on + strand, within CCNA_01816at 1943.085 kb on + strand, within CCNA_01816at 1943.182 kb on + strand, within CCNA_01816at 1943.182 kb on + strand, within CCNA_01816at 1943.200 kb on - strand, within CCNA_01816at 1943.207 kb on - strand, within CCNA_01816at 1943.269 kb on - strand, within CCNA_01816at 1943.274 kb on + strand, within CCNA_01816at 1943.274 kb on + strand, within CCNA_01816at 1943.308 kb on - strand, within CCNA_01816at 1943.323 kb on - strand, within CCNA_01816at 1943.394 kb on + strandat 1943.395 kb on + strandat 1943.395 kb on + strandat 1943.395 kb on - strandat 1943.408 kb on - strandat 1943.408 kb on - strandat 1943.408 kb on - strandat 1943.451 kb on - strandat 1943.455 kb on - strandat 1943.487 kb on + strandat 1943.511 kb on + strandat 1943.526 kb on + strandat 1943.526 kb on + strandat 1943.534 kb on - strandat 1943.660 kb on - strandat 1943.738 kb on - strand, within CCNA_01817at 1943.739 kb on + strand, within CCNA_01817at 1943.739 kb on + strand, within CCNA_01817at 1943.739 kb on + strand, within CCNA_01817at 1943.758 kb on + strand, within CCNA_01817at 1943.759 kb on + strand, within CCNA_01817at 1943.766 kb on - strand, within CCNA_01817at 1943.814 kb on - strand, within CCNA_01817at 1943.966 kb on - strand, within CCNA_01817at 1944.003 kb on - strand, within CCNA_01817at 1944.100 kb on - strand, within CCNA_01817at 1944.130 kb on - strand, within CCNA_01817at 1944.290 kb on + strand, within CCNA_01817at 1944.298 kb on - strand, within CCNA_01817at 1944.327 kb on - strand, within CCNA_01817at 1944.455 kb on - strand, within CCNA_01817at 1944.548 kb on + strand, within CCNA_01817

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
remove
1,941,224 + -0.8
1,941,294 + -0.3
1,941,311 + +0.0
1,941,322 - -0.5
1,941,324 - +0.3
1,941,396 + +0.5
1,941,461 + +0.1
1,941,480 + +0.4
1,941,502 + -0.3
1,941,596 + CCNA_01816 0.13 +0.5
1,941,596 + CCNA_01816 0.13 +0.5
1,941,604 - CCNA_01816 0.13 -1.0
1,941,604 - CCNA_01816 0.13 +0.3
1,941,631 + CCNA_01816 0.14 -0.2
1,941,634 - CCNA_01816 0.14 +1.5
1,941,639 - CCNA_01816 0.15 +0.6
1,941,683 + CCNA_01816 0.17 +0.7
1,941,683 + CCNA_01816 0.17 +0.4
1,941,683 + CCNA_01816 0.17 +0.4
1,941,691 - CCNA_01816 0.17 -0.4
1,941,691 - CCNA_01816 0.17 +0.1
1,941,734 + CCNA_01816 0.19 +1.2
1,941,742 - CCNA_01816 0.19 +0.1
1,941,742 - CCNA_01816 0.19 -1.2
1,941,742 - CCNA_01816 0.19 -0.1
1,941,742 - CCNA_01816 0.19 -0.8
1,941,742 - CCNA_01816 0.19 -0.4
1,941,742 - CCNA_01816 0.19 -0.8
1,941,831 + CCNA_01816 0.23 -0.9
1,941,840 - CCNA_01816 0.24 -0.7
1,941,847 + CCNA_01816 0.24 -0.3
1,941,863 + CCNA_01816 0.25 +0.1
1,941,884 + CCNA_01816 0.25 +1.8
1,941,900 + CCNA_01816 0.26 +0.7
1,941,905 + CCNA_01816 0.26 +0.2
1,941,905 + CCNA_01816 0.26 -0.5
1,941,905 + CCNA_01816 0.26 +0.9
1,942,057 + CCNA_01816 0.33 -0.1
1,942,062 + CCNA_01816 0.33 -1.9
1,942,062 + CCNA_01816 0.33 +0.9
1,942,075 - CCNA_01816 0.34 -0.7
1,942,085 + CCNA_01816 0.34 +0.4
1,942,085 + CCNA_01816 0.34 +1.1
1,942,245 - CCNA_01816 0.42 -1.4
1,942,245 - CCNA_01816 0.42 -0.1
1,942,253 + CCNA_01816 0.42 -0.1
1,942,306 - CCNA_01816 0.44 -0.6
1,942,370 + CCNA_01816 0.47 +0.5
1,942,392 + CCNA_01816 0.48 +0.6
1,942,409 + CCNA_01816 0.49 +0.2
1,942,409 + CCNA_01816 0.49 +0.2
1,942,446 - CCNA_01816 0.51 -1.3
1,942,514 + CCNA_01816 0.54 +0.9
1,942,593 + CCNA_01816 0.57 +0.1
1,942,601 - CCNA_01816 0.57 -0.1
1,942,703 + CCNA_01816 0.62 +0.5
1,942,731 + CCNA_01816 0.63 +0.7
1,942,776 + CCNA_01816 0.65 +0.5
1,942,844 - CCNA_01816 0.68 +1.5
1,942,947 - CCNA_01816 0.73 -0.8
1,943,012 + CCNA_01816 0.76 +0.3
1,943,054 + CCNA_01816 0.78 +0.5
1,943,085 + CCNA_01816 0.79 +0.7
1,943,182 + CCNA_01816 0.83 +0.3
1,943,182 + CCNA_01816 0.83 +1.2
1,943,200 - CCNA_01816 0.84 -1.1
1,943,207 - CCNA_01816 0.84 +0.5
1,943,269 - CCNA_01816 0.87 -0.2
1,943,274 + CCNA_01816 0.87 -0.5
1,943,274 + CCNA_01816 0.87 +0.1
1,943,308 - CCNA_01816 0.89 +0.6
1,943,323 - CCNA_01816 0.90 +0.5
1,943,394 + -0.4
1,943,395 + +0.5
1,943,395 + +0.9
1,943,395 - -0.6
1,943,408 - +1.0
1,943,408 - +0.7
1,943,408 - +0.5
1,943,451 - -0.1
1,943,455 - -1.1
1,943,487 + -0.6
1,943,511 + +0.5
1,943,526 + -0.8
1,943,526 + -0.5
1,943,534 - -0.1
1,943,660 - +0.1
1,943,738 - CCNA_01817 0.13 -0.1
1,943,739 + CCNA_01817 0.13 -0.9
1,943,739 + CCNA_01817 0.13 +0.4
1,943,739 + CCNA_01817 0.13 -1.1
1,943,758 + CCNA_01817 0.15 -0.8
1,943,759 + CCNA_01817 0.15 -0.5
1,943,766 - CCNA_01817 0.15 +0.9
1,943,814 - CCNA_01817 0.19 +0.9
1,943,966 - CCNA_01817 0.30 +0.1
1,944,003 - CCNA_01817 0.32 -1.5
1,944,100 - CCNA_01817 0.39 +0.6
1,944,130 - CCNA_01817 0.42 -0.8
1,944,290 + CCNA_01817 0.53 -1.6
1,944,298 - CCNA_01817 0.54 -0.7
1,944,327 - CCNA_01817 0.56 -0.1
1,944,455 - CCNA_01817 0.65 +1.2
1,944,548 + CCNA_01817 0.72 -0.3

Or see this region's nucleotide sequence