Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01811

Experiment: PYE no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01809 and CCNA_01810 are separated by 3 nucleotidesCCNA_01810 and CCNA_01811 overlap by 4 nucleotidesCCNA_01811 and CCNA_01812 are separated by 38 nucleotides CCNA_01809: CCNA_01809 - lipoic acid synthetase, at 1,934,502 to 1,935,479 _01809 CCNA_01810: CCNA_01810 - coenzyme Q-binding protein, at 1,935,483 to 1,935,929 _01810 CCNA_01811: CCNA_01811 - competence/damage-inducible protein CinA, at 1,935,926 to 1,936,417 _01811 CCNA_01812: CCNA_01812 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,936,456 to 1,937,604 _01812 Position (kb) 1935 1936 1937Strain fitness (log2 ratio) -1 0 1 2 3at 1935.437 kb on + strandat 1935.445 kb on - strandat 1935.473 kb on + strandat 1935.480 kb on + strandat 1935.488 kb on - strandat 1936.070 kb on - strand, within CCNA_01811at 1936.123 kb on + strand, within CCNA_01811at 1936.131 kb on + strand, within CCNA_01811at 1936.138 kb on - strand, within CCNA_01811at 1936.197 kb on - strand, within CCNA_01811at 1936.228 kb on - strand, within CCNA_01811at 1936.339 kb on - strand, within CCNA_01811at 1936.445 kb on + strandat 1936.936 kb on - strand, within CCNA_01812

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
remove
1,935,437 + +0.2
1,935,445 - -1.3
1,935,473 + +1.6
1,935,480 + +0.3
1,935,488 - -1.5
1,936,070 - CCNA_01811 0.29 -0.9
1,936,123 + CCNA_01811 0.40 -0.3
1,936,131 + CCNA_01811 0.42 +3.1
1,936,138 - CCNA_01811 0.43 +0.9
1,936,197 - CCNA_01811 0.55 -0.0
1,936,228 - CCNA_01811 0.61 +0.7
1,936,339 - CCNA_01811 0.84 +0.2
1,936,445 + -1.3
1,936,936 - CCNA_01812 0.42 +0.3

Or see this region's nucleotide sequence