Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01789 and CCNA_01790 are separated by 139 nucleotides CCNA_01790 and CCNA_01791 are separated by 115 nucleotides CCNA_01791 and CCNA_01792 are separated by 114 nucleotides CCNA_01792 and CCNA_01793 are separated by 123 nucleotides
CCNA_01789: CCNA_01789 - acetyltransferase, GNAT family, at 1,916,649 to 1,917,164
_01789
CCNA_01790: CCNA_01790 - protein translocase subunit secG, at 1,917,304 to 1,917,771
_01790
CCNA_01791: CCNA_01791 - CTP synthase, at 1,917,887 to 1,919,539
_01791
CCNA_01792: CCNA_01792 - LSU ribosomal protein L32P, at 1,919,654 to 1,919,836
_01792
CCNA_01793: CCNA_01793 - aspartate protease, at 1,919,960 to 1,920,958
_01793
Position (kb)
1917
1918
1919
1920 Strain fitness (log2 ratio)
-2
-1
0
1 at 1916.897 kb on - strand, within CCNA_01789 at 1916.946 kb on - strand, within CCNA_01789 at 1916.954 kb on - strand, within CCNA_01789 at 1916.971 kb on + strand, within CCNA_01789 at 1916.971 kb on + strand, within CCNA_01789 at 1917.053 kb on + strand, within CCNA_01789 at 1917.061 kb on - strand, within CCNA_01789 at 1917.061 kb on - strand, within CCNA_01789 at 1917.072 kb on - strand, within CCNA_01789 at 1917.073 kb on - strand, within CCNA_01789 at 1917.102 kb on + strand, within CCNA_01789 at 1917.151 kb on + strand at 1917.153 kb on + strand at 1917.168 kb on + strand at 1917.180 kb on + strand at 1917.180 kb on + strand at 1917.180 kb on + strand at 1917.188 kb on - strand at 1917.208 kb on + strand at 1917.211 kb on - strand at 1917.570 kb on + strand, within CCNA_01790 at 1917.580 kb on + strand, within CCNA_01790 at 1917.675 kb on + strand, within CCNA_01790 at 1917.683 kb on - strand, within CCNA_01790 at 1917.759 kb on + strand at 1917.759 kb on + strand at 1917.759 kb on + strand at 1917.759 kb on + strand at 1917.765 kb on + strand at 1917.765 kb on + strand at 1917.772 kb on - strand at 1919.958 kb on - strand at 1919.987 kb on + strand at 1919.988 kb on - strand at 1920.050 kb on + strand at 1920.079 kb on + strand, within CCNA_01793 at 1920.218 kb on + strand, within CCNA_01793 at 1920.225 kb on + strand, within CCNA_01793 at 1920.226 kb on - strand, within CCNA_01793 at 1920.233 kb on - strand, within CCNA_01793 at 1920.233 kb on - strand, within CCNA_01793 at 1920.233 kb on - strand, within CCNA_01793 at 1920.233 kb on - strand, within CCNA_01793 at 1920.244 kb on + strand, within CCNA_01793 at 1920.252 kb on - strand, within CCNA_01793 at 1920.311 kb on + strand, within CCNA_01793 at 1920.347 kb on - strand, within CCNA_01793 at 1920.496 kb on + strand, within CCNA_01793
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,916,897 - CCNA_01789 0.48 -0.6 1,916,946 - CCNA_01789 0.58 +0.4 1,916,954 - CCNA_01789 0.59 +0.3 1,916,971 + CCNA_01789 0.62 +0.2 1,916,971 + CCNA_01789 0.62 -0.1 1,917,053 + CCNA_01789 0.78 +0.5 1,917,061 - CCNA_01789 0.80 -1.4 1,917,061 - CCNA_01789 0.80 +0.5 1,917,072 - CCNA_01789 0.82 +0.9 1,917,073 - CCNA_01789 0.82 +1.4 1,917,102 + CCNA_01789 0.88 +0.4 1,917,151 + +1.2 1,917,153 + +0.2 1,917,168 + +0.3 1,917,180 + -1.4 1,917,180 + +0.6 1,917,180 + +0.9 1,917,188 - -1.1 1,917,208 + -0.7 1,917,211 - -0.0 1,917,570 + CCNA_01790 0.57 +0.4 1,917,580 + CCNA_01790 0.59 +1.0 1,917,675 + CCNA_01790 0.79 +0.5 1,917,683 - CCNA_01790 0.81 +1.0 1,917,759 + +0.6 1,917,759 + -1.0 1,917,759 + +0.7 1,917,759 + +0.2 1,917,765 + -0.4 1,917,765 + +0.6 1,917,772 - +0.7 1,919,958 - +0.2 1,919,987 + -0.7 1,919,988 - +0.1 1,920,050 + +0.6 1,920,079 + CCNA_01793 0.12 +0.4 1,920,218 + CCNA_01793 0.26 +0.8 1,920,225 + CCNA_01793 0.27 -0.0 1,920,226 - CCNA_01793 0.27 -1.9 1,920,233 - CCNA_01793 0.27 +0.1 1,920,233 - CCNA_01793 0.27 -0.4 1,920,233 - CCNA_01793 0.27 +0.3 1,920,233 - CCNA_01793 0.27 -1.0 1,920,244 + CCNA_01793 0.28 -0.0 1,920,252 - CCNA_01793 0.29 -0.2 1,920,311 + CCNA_01793 0.35 +0.3 1,920,347 - CCNA_01793 0.39 +0.0 1,920,496 + CCNA_01793 0.54 +1.4
Or see this region's nucleotide sequence