Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01779

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01778 and CCNA_01779 are separated by 32 nucleotidesCCNA_01779 and CCNA_01780 are separated by 155 nucleotides CCNA_01778: CCNA_01778 - penicillin-binding protein, at 1,905,204 to 1,906,496 _01778 CCNA_01779: CCNA_01779 - hypothetical protein, at 1,906,529 to 1,906,798 _01779 CCNA_01780: CCNA_01780 - exopolyphosphatase, at 1,906,954 to 1,908,453 _01780 Position (kb) 1906 1907Strain fitness (log2 ratio) -2 -1 0 1 2at 1905.600 kb on - strand, within CCNA_01778at 1905.675 kb on - strand, within CCNA_01778at 1905.675 kb on - strand, within CCNA_01778at 1905.675 kb on - strand, within CCNA_01778at 1905.740 kb on - strand, within CCNA_01778at 1905.740 kb on - strand, within CCNA_01778at 1905.780 kb on - strand, within CCNA_01778at 1905.817 kb on - strand, within CCNA_01778at 1905.846 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.898 kb on + strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.906 kb on - strand, within CCNA_01778at 1905.939 kb on + strand, within CCNA_01778at 1905.949 kb on - strand, within CCNA_01778at 1905.960 kb on + strand, within CCNA_01778at 1906.033 kb on + strand, within CCNA_01778at 1906.091 kb on - strand, within CCNA_01778at 1906.161 kb on + strand, within CCNA_01778at 1906.202 kb on + strand, within CCNA_01778at 1906.210 kb on - strand, within CCNA_01778at 1906.213 kb on + strand, within CCNA_01778at 1906.228 kb on - strand, within CCNA_01778at 1906.235 kb on - strand, within CCNA_01778at 1906.248 kb on - strand, within CCNA_01778at 1906.255 kb on + strand, within CCNA_01778at 1906.263 kb on - strand, within CCNA_01778at 1906.367 kb on - strandat 1906.485 kb on - strandat 1906.513 kb on + strandat 1906.521 kb on - strandat 1906.575 kb on - strand, within CCNA_01779at 1906.575 kb on - strand, within CCNA_01779at 1906.583 kb on - strand, within CCNA_01779at 1906.658 kb on + strand, within CCNA_01779at 1906.666 kb on - strand, within CCNA_01779at 1906.724 kb on + strand, within CCNA_01779at 1906.746 kb on + strand, within CCNA_01779at 1906.795 kb on + strandat 1906.987 kb on + strandat 1907.075 kb on + strandat 1907.080 kb on + strandat 1907.088 kb on - strandat 1907.109 kb on - strand, within CCNA_01780at 1907.122 kb on - strand, within CCNA_01780at 1907.171 kb on + strand, within CCNA_01780at 1907.178 kb on + strand, within CCNA_01780at 1907.292 kb on - strand, within CCNA_01780at 1907.306 kb on + strand, within CCNA_01780at 1907.340 kb on + strand, within CCNA_01780at 1907.490 kb on + strand, within CCNA_01780at 1907.545 kb on + strand, within CCNA_01780at 1907.555 kb on + strand, within CCNA_01780at 1907.582 kb on + strand, within CCNA_01780at 1907.653 kb on + strand, within CCNA_01780at 1907.653 kb on + strand, within CCNA_01780at 1907.705 kb on + strand, within CCNA_01780at 1907.705 kb on + strand, within CCNA_01780at 1907.705 kb on + strand, within CCNA_01780at 1907.713 kb on - strand, within CCNA_01780at 1907.713 kb on - strand, within CCNA_01780at 1907.713 kb on - strand, within CCNA_01780at 1907.742 kb on + strand, within CCNA_01780at 1907.743 kb on - strand, within CCNA_01780at 1907.770 kb on - strand, within CCNA_01780

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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1,905,600 - CCNA_01778 0.31 +0.5
1,905,675 - CCNA_01778 0.36 +0.4
1,905,675 - CCNA_01778 0.36 -0.3
1,905,675 - CCNA_01778 0.36 -0.2
1,905,740 - CCNA_01778 0.41 +0.2
1,905,740 - CCNA_01778 0.41 +0.9
1,905,780 - CCNA_01778 0.45 -2.1
1,905,817 - CCNA_01778 0.47 -0.1
1,905,846 + CCNA_01778 0.50 +0.4
1,905,897 + CCNA_01778 0.54 +0.2
1,905,897 + CCNA_01778 0.54 -0.2
1,905,897 + CCNA_01778 0.54 +0.4
1,905,897 + CCNA_01778 0.54 +0.4
1,905,897 + CCNA_01778 0.54 +0.4
1,905,897 + CCNA_01778 0.54 +0.8
1,905,897 + CCNA_01778 0.54 +0.9
1,905,897 + CCNA_01778 0.54 +0.5
1,905,897 + CCNA_01778 0.54 +0.4
1,905,897 + CCNA_01778 0.54 -0.1
1,905,897 + CCNA_01778 0.54 +0.6
1,905,897 + CCNA_01778 0.54 +2.5
1,905,897 + CCNA_01778 0.54 +1.6
1,905,897 + CCNA_01778 0.54 +0.5
1,905,897 + CCNA_01778 0.54 +1.4
1,905,897 + CCNA_01778 0.54 +0.2
1,905,897 + CCNA_01778 0.54 +0.6
1,905,897 + CCNA_01778 0.54 +0.4
1,905,898 + CCNA_01778 0.54 +0.3
1,905,905 - CCNA_01778 0.54 +0.3
1,905,905 - CCNA_01778 0.54 -0.1
1,905,905 - CCNA_01778 0.54 +0.3
1,905,905 - CCNA_01778 0.54 +0.9
1,905,905 - CCNA_01778 0.54 -1.0
1,905,905 - CCNA_01778 0.54 -0.9
1,905,905 - CCNA_01778 0.54 -2.1
1,905,905 - CCNA_01778 0.54 -0.1
1,905,905 - CCNA_01778 0.54 +1.9
1,905,905 - CCNA_01778 0.54 -0.9
1,905,905 - CCNA_01778 0.54 +0.1
1,905,906 - CCNA_01778 0.54 +0.1
1,905,939 + CCNA_01778 0.57 +0.8
1,905,949 - CCNA_01778 0.58 -0.1
1,905,960 + CCNA_01778 0.58 +1.1
1,906,033 + CCNA_01778 0.64 -0.9
1,906,091 - CCNA_01778 0.69 -0.9
1,906,161 + CCNA_01778 0.74 +0.0
1,906,202 + CCNA_01778 0.77 -0.8
1,906,210 - CCNA_01778 0.78 -0.9
1,906,213 + CCNA_01778 0.78 +0.4
1,906,228 - CCNA_01778 0.79 -2.1
1,906,235 - CCNA_01778 0.80 -0.3
1,906,248 - CCNA_01778 0.81 +0.8
1,906,255 + CCNA_01778 0.81 +1.6
1,906,263 - CCNA_01778 0.82 +0.7
1,906,367 - +1.1
1,906,485 - -0.8
1,906,513 + +0.2
1,906,521 - +0.4
1,906,575 - CCNA_01779 0.17 +0.5
1,906,575 - CCNA_01779 0.17 +2.3
1,906,583 - CCNA_01779 0.20 +0.9
1,906,658 + CCNA_01779 0.48 -0.9
1,906,666 - CCNA_01779 0.51 +0.2
1,906,724 + CCNA_01779 0.72 -0.1
1,906,746 + CCNA_01779 0.80 +0.9
1,906,795 + -1.4
1,906,987 + -0.6
1,907,075 + -0.1
1,907,080 + -1.0
1,907,088 - +1.2
1,907,109 - CCNA_01780 0.10 -1.4
1,907,122 - CCNA_01780 0.11 -0.1
1,907,171 + CCNA_01780 0.14 -0.0
1,907,178 + CCNA_01780 0.15 -0.6
1,907,292 - CCNA_01780 0.23 +0.9
1,907,306 + CCNA_01780 0.23 -1.4
1,907,340 + CCNA_01780 0.26 +1.0
1,907,490 + CCNA_01780 0.36 +0.2
1,907,545 + CCNA_01780 0.39 +0.5
1,907,555 + CCNA_01780 0.40 -0.5
1,907,582 + CCNA_01780 0.42 -0.9
1,907,653 + CCNA_01780 0.47 -1.4
1,907,653 + CCNA_01780 0.47 -0.4
1,907,705 + CCNA_01780 0.50 -0.7
1,907,705 + CCNA_01780 0.50 -0.3
1,907,705 + CCNA_01780 0.50 +0.5
1,907,713 - CCNA_01780 0.51 -0.8
1,907,713 - CCNA_01780 0.51 -0.5
1,907,713 - CCNA_01780 0.51 -1.6
1,907,742 + CCNA_01780 0.53 +0.1
1,907,743 - CCNA_01780 0.53 -0.1
1,907,770 - CCNA_01780 0.54 +0.8

Or see this region's nucleotide sequence