Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01628 and CCNA_01629 are separated by 123 nucleotides CCNA_01629 and CCNA_01630 are separated by 21 nucleotides CCNA_01630 and CCNA_01632 are separated by 303 nucleotides CCNA_01632 and CCNA_01633 are separated by 149 nucleotides
CCNA_01628: CCNA_01628 - hypothetical protein, at 1,748,742 to 1,749,035
_01628
CCNA_01629: CCNA_01629 - signal peptidase I, at 1,749,159 to 1,750,004
_01629
CCNA_01630: CCNA_01630 - ribonuclease III, at 1,750,026 to 1,750,721
_01630
CCNA_01632: CCNA_01632 - hypothetical protein, at 1,751,025 to 1,751,486
_01632
CCNA_01633: CCNA_01633 - GTP-binding protein era, at 1,751,636 to 1,752,586
_01633
Position (kb)
1750
1751 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1749.028 kb on - strand at 1749.042 kb on + strand at 1749.042 kb on + strand at 1749.043 kb on + strand at 1749.050 kb on - strand at 1749.050 kb on - strand at 1749.077 kb on + strand at 1749.077 kb on + strand at 1749.077 kb on + strand at 1749.085 kb on - strand at 1749.085 kb on - strand at 1749.091 kb on + strand at 1749.156 kb on + strand at 1749.156 kb on + strand at 1749.249 kb on - strand, within CCNA_01629 at 1749.251 kb on + strand, within CCNA_01629 at 1749.251 kb on + strand, within CCNA_01629 at 1749.253 kb on + strand, within CCNA_01629 at 1749.259 kb on + strand, within CCNA_01629 at 1749.267 kb on - strand, within CCNA_01629 at 1749.323 kb on + strand, within CCNA_01629 at 1749.366 kb on + strand, within CCNA_01629 at 1749.366 kb on + strand, within CCNA_01629 at 1749.530 kb on - strand, within CCNA_01629 at 1749.530 kb on - strand, within CCNA_01629 at 1749.530 kb on - strand, within CCNA_01629 at 1749.543 kb on + strand, within CCNA_01629 at 1749.543 kb on + strand, within CCNA_01629 at 1749.543 kb on + strand, within CCNA_01629 at 1749.548 kb on + strand, within CCNA_01629 at 1749.550 kb on - strand, within CCNA_01629 at 1749.551 kb on - strand, within CCNA_01629 at 1749.561 kb on + strand, within CCNA_01629 at 1749.566 kb on + strand, within CCNA_01629 at 1749.568 kb on - strand, within CCNA_01629 at 1749.569 kb on - strand, within CCNA_01629 at 1749.574 kb on - strand, within CCNA_01629 at 1749.576 kb on + strand, within CCNA_01629 at 1749.581 kb on + strand, within CCNA_01629 at 1749.584 kb on - strand, within CCNA_01629 at 1749.589 kb on - strand, within CCNA_01629 at 1749.603 kb on + strand, within CCNA_01629 at 1749.612 kb on - strand, within CCNA_01629 at 1749.624 kb on + strand, within CCNA_01629 at 1749.685 kb on - strand, within CCNA_01629 at 1749.778 kb on + strand, within CCNA_01629 at 1749.905 kb on + strand, within CCNA_01629 at 1750.697 kb on + strand at 1750.716 kb on + strand at 1750.724 kb on - strand at 1750.724 kb on - strand at 1750.724 kb on - strand at 1750.746 kb on - strand at 1750.785 kb on - strand at 1750.793 kb on - strand at 1750.818 kb on - strand at 1750.825 kb on + strand at 1750.828 kb on - strand at 1750.892 kb on + strand at 1750.902 kb on + strand at 1750.902 kb on + strand at 1750.908 kb on - strand at 1750.908 kb on - strand at 1750.913 kb on + strand at 1750.930 kb on - strand at 1750.971 kb on + strand at 1750.973 kb on + strand at 1750.973 kb on + strand at 1750.973 kb on + strand at 1750.981 kb on - strand at 1750.981 kb on - strand at 1750.981 kb on - strand at 1751.010 kb on - strand at 1751.034 kb on + strand at 1751.051 kb on + strand at 1751.052 kb on - strand at 1751.059 kb on - strand at 1751.067 kb on + strand at 1751.085 kb on + strand, within CCNA_01632 at 1751.085 kb on + strand, within CCNA_01632 at 1751.093 kb on - strand, within CCNA_01632 at 1751.119 kb on + strand, within CCNA_01632 at 1751.142 kb on + strand, within CCNA_01632 at 1751.161 kb on - strand, within CCNA_01632 at 1751.207 kb on + strand, within CCNA_01632 at 1751.232 kb on + strand, within CCNA_01632 at 1751.232 kb on + strand, within CCNA_01632 at 1751.240 kb on - strand, within CCNA_01632 at 1751.251 kb on - strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.298 kb on + strand, within CCNA_01632 at 1751.298 kb on + strand, within CCNA_01632 at 1751.317 kb on - strand, within CCNA_01632 at 1751.400 kb on + strand, within CCNA_01632 at 1751.454 kb on + strand at 1751.454 kb on + strand at 1751.454 kb on + strand at 1751.454 kb on + strand at 1751.462 kb on - strand at 1751.462 kb on - strand at 1751.467 kb on + strand at 1751.475 kb on - strand at 1751.475 kb on - strand at 1751.493 kb on + strand at 1751.493 kb on + strand at 1751.495 kb on + strand at 1751.509 kb on - strand at 1751.526 kb on - strand at 1751.626 kb on - strand at 1751.626 kb on - strand at 1751.626 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,749,028 - -0.7 1,749,042 + +0.5 1,749,042 + -0.0 1,749,043 + +0.4 1,749,050 - -1.1 1,749,050 - -0.7 1,749,077 + +1.3 1,749,077 + +0.6 1,749,077 + +1.8 1,749,085 - -0.6 1,749,085 - -2.3 1,749,091 + -0.4 1,749,156 + +0.7 1,749,156 + -0.1 1,749,249 - CCNA_01629 0.11 +0.5 1,749,251 + CCNA_01629 0.11 +0.7 1,749,251 + CCNA_01629 0.11 -0.2 1,749,253 + CCNA_01629 0.11 -0.1 1,749,259 + CCNA_01629 0.12 -0.0 1,749,267 - CCNA_01629 0.13 -1.8 1,749,323 + CCNA_01629 0.19 +0.4 1,749,366 + CCNA_01629 0.24 +0.2 1,749,366 + CCNA_01629 0.24 +0.2 1,749,530 - CCNA_01629 0.44 +0.4 1,749,530 - CCNA_01629 0.44 -0.3 1,749,530 - CCNA_01629 0.44 +2.6 1,749,543 + CCNA_01629 0.45 -0.1 1,749,543 + CCNA_01629 0.45 +0.3 1,749,543 + CCNA_01629 0.45 +0.5 1,749,548 + CCNA_01629 0.46 +0.4 1,749,550 - CCNA_01629 0.46 -0.5 1,749,551 - CCNA_01629 0.46 +1.0 1,749,561 + CCNA_01629 0.48 +0.6 1,749,566 + CCNA_01629 0.48 +0.8 1,749,568 - CCNA_01629 0.48 -0.0 1,749,569 - CCNA_01629 0.48 +0.0 1,749,574 - CCNA_01629 0.49 +0.2 1,749,576 + CCNA_01629 0.49 -0.1 1,749,581 + CCNA_01629 0.50 +0.9 1,749,584 - CCNA_01629 0.50 -0.2 1,749,589 - CCNA_01629 0.51 -1.3 1,749,603 + CCNA_01629 0.52 +1.7 1,749,612 - CCNA_01629 0.54 -0.5 1,749,624 + CCNA_01629 0.55 +0.8 1,749,685 - CCNA_01629 0.62 -1.2 1,749,778 + CCNA_01629 0.73 +0.4 1,749,905 + CCNA_01629 0.88 +0.0 1,750,697 + +0.8 1,750,716 + -0.1 1,750,724 - -0.5 1,750,724 - -0.8 1,750,724 - +0.0 1,750,746 - -0.2 1,750,785 - +1.0 1,750,793 - +1.1 1,750,818 - -0.2 1,750,825 + +0.4 1,750,828 - +1.2 1,750,892 + -0.7 1,750,902 + +0.4 1,750,902 + +0.4 1,750,908 - +0.1 1,750,908 - +0.1 1,750,913 + +1.7 1,750,930 - -1.6 1,750,971 + -0.1 1,750,973 + -0.0 1,750,973 + -1.1 1,750,973 + -1.6 1,750,981 - -1.3 1,750,981 - -0.3 1,750,981 - +2.4 1,751,010 - -0.4 1,751,034 + -0.9 1,751,051 + -0.2 1,751,052 - -0.4 1,751,059 - -0.2 1,751,067 + +0.1 1,751,085 + CCNA_01632 0.13 +0.5 1,751,085 + CCNA_01632 0.13 -0.5 1,751,093 - CCNA_01632 0.15 -0.6 1,751,119 + CCNA_01632 0.20 -0.8 1,751,142 + CCNA_01632 0.25 +0.6 1,751,161 - CCNA_01632 0.29 +0.5 1,751,207 + CCNA_01632 0.39 +0.1 1,751,232 + CCNA_01632 0.45 -0.5 1,751,232 + CCNA_01632 0.45 -0.1 1,751,240 - CCNA_01632 0.47 +0.6 1,751,251 - CCNA_01632 0.49 -0.2 1,751,288 + CCNA_01632 0.57 +0.7 1,751,288 + CCNA_01632 0.57 -1.5 1,751,288 + CCNA_01632 0.57 -0.2 1,751,288 + CCNA_01632 0.57 -1.0 1,751,288 + CCNA_01632 0.57 -1.6 1,751,288 + CCNA_01632 0.57 -0.4 1,751,288 + CCNA_01632 0.57 -1.0 1,751,296 - CCNA_01632 0.59 +0.1 1,751,296 - CCNA_01632 0.59 -1.8 1,751,296 - CCNA_01632 0.59 -1.1 1,751,296 - CCNA_01632 0.59 -1.1 1,751,296 - CCNA_01632 0.59 -0.8 1,751,296 - CCNA_01632 0.59 -0.8 1,751,298 + CCNA_01632 0.59 -1.4 1,751,298 + CCNA_01632 0.59 +1.0 1,751,317 - CCNA_01632 0.63 +0.8 1,751,400 + CCNA_01632 0.81 -0.6 1,751,454 + -0.3 1,751,454 + -1.5 1,751,454 + -0.2 1,751,454 + +1.3 1,751,462 - +0.7 1,751,462 - +1.2 1,751,467 + +0.5 1,751,475 - +0.2 1,751,475 - +0.4 1,751,493 + -0.9 1,751,493 + +0.8 1,751,495 + -0.7 1,751,509 - -0.3 1,751,526 - +0.4 1,751,626 - -0.0 1,751,626 - -0.6 1,751,626 - +0.1
Or see this region's nucleotide sequence