Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01630

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01628 and CCNA_01629 are separated by 123 nucleotidesCCNA_01629 and CCNA_01630 are separated by 21 nucleotidesCCNA_01630 and CCNA_01632 are separated by 303 nucleotidesCCNA_01632 and CCNA_01633 are separated by 149 nucleotides CCNA_01628: CCNA_01628 - hypothetical protein, at 1,748,742 to 1,749,035 _01628 CCNA_01629: CCNA_01629 - signal peptidase I, at 1,749,159 to 1,750,004 _01629 CCNA_01630: CCNA_01630 - ribonuclease III, at 1,750,026 to 1,750,721 _01630 CCNA_01632: CCNA_01632 - hypothetical protein, at 1,751,025 to 1,751,486 _01632 CCNA_01633: CCNA_01633 - GTP-binding protein era, at 1,751,636 to 1,752,586 _01633 Position (kb) 1750 1751Strain fitness (log2 ratio) -2 -1 0 1 2at 1749.028 kb on - strandat 1749.042 kb on + strandat 1749.042 kb on + strandat 1749.043 kb on + strandat 1749.050 kb on - strandat 1749.050 kb on - strandat 1749.077 kb on + strandat 1749.077 kb on + strandat 1749.077 kb on + strandat 1749.085 kb on - strandat 1749.085 kb on - strandat 1749.091 kb on + strandat 1749.156 kb on + strandat 1749.156 kb on + strandat 1749.249 kb on - strand, within CCNA_01629at 1749.251 kb on + strand, within CCNA_01629at 1749.251 kb on + strand, within CCNA_01629at 1749.253 kb on + strand, within CCNA_01629at 1749.259 kb on + strand, within CCNA_01629at 1749.267 kb on - strand, within CCNA_01629at 1749.323 kb on + strand, within CCNA_01629at 1749.366 kb on + strand, within CCNA_01629at 1749.366 kb on + strand, within CCNA_01629at 1749.530 kb on - strand, within CCNA_01629at 1749.530 kb on - strand, within CCNA_01629at 1749.530 kb on - strand, within CCNA_01629at 1749.543 kb on + strand, within CCNA_01629at 1749.543 kb on + strand, within CCNA_01629at 1749.543 kb on + strand, within CCNA_01629at 1749.548 kb on + strand, within CCNA_01629at 1749.550 kb on - strand, within CCNA_01629at 1749.551 kb on - strand, within CCNA_01629at 1749.561 kb on + strand, within CCNA_01629at 1749.566 kb on + strand, within CCNA_01629at 1749.568 kb on - strand, within CCNA_01629at 1749.569 kb on - strand, within CCNA_01629at 1749.574 kb on - strand, within CCNA_01629at 1749.576 kb on + strand, within CCNA_01629at 1749.581 kb on + strand, within CCNA_01629at 1749.584 kb on - strand, within CCNA_01629at 1749.589 kb on - strand, within CCNA_01629at 1749.603 kb on + strand, within CCNA_01629at 1749.612 kb on - strand, within CCNA_01629at 1749.624 kb on + strand, within CCNA_01629at 1749.685 kb on - strand, within CCNA_01629at 1749.778 kb on + strand, within CCNA_01629at 1749.905 kb on + strand, within CCNA_01629at 1750.697 kb on + strandat 1750.716 kb on + strandat 1750.724 kb on - strandat 1750.724 kb on - strandat 1750.724 kb on - strandat 1750.746 kb on - strandat 1750.785 kb on - strandat 1750.793 kb on - strandat 1750.818 kb on - strandat 1750.825 kb on + strandat 1750.828 kb on - strandat 1750.892 kb on + strandat 1750.902 kb on + strandat 1750.902 kb on + strandat 1750.908 kb on - strandat 1750.908 kb on - strandat 1750.913 kb on + strandat 1750.930 kb on - strandat 1750.971 kb on + strandat 1750.973 kb on + strandat 1750.973 kb on + strandat 1750.973 kb on + strandat 1750.981 kb on - strandat 1750.981 kb on - strandat 1750.981 kb on - strandat 1751.010 kb on - strandat 1751.034 kb on + strandat 1751.051 kb on + strandat 1751.052 kb on - strandat 1751.059 kb on - strandat 1751.067 kb on + strandat 1751.085 kb on + strand, within CCNA_01632at 1751.085 kb on + strand, within CCNA_01632at 1751.093 kb on - strand, within CCNA_01632at 1751.119 kb on + strand, within CCNA_01632at 1751.142 kb on + strand, within CCNA_01632at 1751.161 kb on - strand, within CCNA_01632at 1751.207 kb on + strand, within CCNA_01632at 1751.232 kb on + strand, within CCNA_01632at 1751.232 kb on + strand, within CCNA_01632at 1751.240 kb on - strand, within CCNA_01632at 1751.251 kb on - strand, within CCNA_01632at 1751.288 kb on + strand, within CCNA_01632at 1751.288 kb on + strand, within CCNA_01632at 1751.288 kb on + strand, within CCNA_01632at 1751.288 kb on + strand, within CCNA_01632at 1751.288 kb on + strand, within CCNA_01632at 1751.288 kb on + strand, within CCNA_01632at 1751.288 kb on + strand, within CCNA_01632at 1751.296 kb on - strand, within CCNA_01632at 1751.296 kb on - strand, within CCNA_01632at 1751.296 kb on - strand, within CCNA_01632at 1751.296 kb on - strand, within CCNA_01632at 1751.296 kb on - strand, within CCNA_01632at 1751.296 kb on - strand, within CCNA_01632at 1751.298 kb on + strand, within CCNA_01632at 1751.298 kb on + strand, within CCNA_01632at 1751.317 kb on - strand, within CCNA_01632at 1751.400 kb on + strand, within CCNA_01632at 1751.454 kb on + strandat 1751.454 kb on + strandat 1751.454 kb on + strandat 1751.454 kb on + strandat 1751.462 kb on - strandat 1751.462 kb on - strandat 1751.467 kb on + strandat 1751.475 kb on - strandat 1751.475 kb on - strandat 1751.493 kb on + strandat 1751.493 kb on + strandat 1751.495 kb on + strandat 1751.509 kb on - strandat 1751.526 kb on - strandat 1751.626 kb on - strandat 1751.626 kb on - strandat 1751.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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1,749,028 - -0.7
1,749,042 + +0.5
1,749,042 + -0.0
1,749,043 + +0.4
1,749,050 - -1.1
1,749,050 - -0.7
1,749,077 + +1.3
1,749,077 + +0.6
1,749,077 + +1.8
1,749,085 - -0.6
1,749,085 - -2.3
1,749,091 + -0.4
1,749,156 + +0.7
1,749,156 + -0.1
1,749,249 - CCNA_01629 0.11 +0.5
1,749,251 + CCNA_01629 0.11 +0.7
1,749,251 + CCNA_01629 0.11 -0.2
1,749,253 + CCNA_01629 0.11 -0.1
1,749,259 + CCNA_01629 0.12 -0.0
1,749,267 - CCNA_01629 0.13 -1.8
1,749,323 + CCNA_01629 0.19 +0.4
1,749,366 + CCNA_01629 0.24 +0.2
1,749,366 + CCNA_01629 0.24 +0.2
1,749,530 - CCNA_01629 0.44 +0.4
1,749,530 - CCNA_01629 0.44 -0.3
1,749,530 - CCNA_01629 0.44 +2.6
1,749,543 + CCNA_01629 0.45 -0.1
1,749,543 + CCNA_01629 0.45 +0.3
1,749,543 + CCNA_01629 0.45 +0.5
1,749,548 + CCNA_01629 0.46 +0.4
1,749,550 - CCNA_01629 0.46 -0.5
1,749,551 - CCNA_01629 0.46 +1.0
1,749,561 + CCNA_01629 0.48 +0.6
1,749,566 + CCNA_01629 0.48 +0.8
1,749,568 - CCNA_01629 0.48 -0.0
1,749,569 - CCNA_01629 0.48 +0.0
1,749,574 - CCNA_01629 0.49 +0.2
1,749,576 + CCNA_01629 0.49 -0.1
1,749,581 + CCNA_01629 0.50 +0.9
1,749,584 - CCNA_01629 0.50 -0.2
1,749,589 - CCNA_01629 0.51 -1.3
1,749,603 + CCNA_01629 0.52 +1.7
1,749,612 - CCNA_01629 0.54 -0.5
1,749,624 + CCNA_01629 0.55 +0.8
1,749,685 - CCNA_01629 0.62 -1.2
1,749,778 + CCNA_01629 0.73 +0.4
1,749,905 + CCNA_01629 0.88 +0.0
1,750,697 + +0.8
1,750,716 + -0.1
1,750,724 - -0.5
1,750,724 - -0.8
1,750,724 - +0.0
1,750,746 - -0.2
1,750,785 - +1.0
1,750,793 - +1.1
1,750,818 - -0.2
1,750,825 + +0.4
1,750,828 - +1.2
1,750,892 + -0.7
1,750,902 + +0.4
1,750,902 + +0.4
1,750,908 - +0.1
1,750,908 - +0.1
1,750,913 + +1.7
1,750,930 - -1.6
1,750,971 + -0.1
1,750,973 + -0.0
1,750,973 + -1.1
1,750,973 + -1.6
1,750,981 - -1.3
1,750,981 - -0.3
1,750,981 - +2.4
1,751,010 - -0.4
1,751,034 + -0.9
1,751,051 + -0.2
1,751,052 - -0.4
1,751,059 - -0.2
1,751,067 + +0.1
1,751,085 + CCNA_01632 0.13 +0.5
1,751,085 + CCNA_01632 0.13 -0.5
1,751,093 - CCNA_01632 0.15 -0.6
1,751,119 + CCNA_01632 0.20 -0.8
1,751,142 + CCNA_01632 0.25 +0.6
1,751,161 - CCNA_01632 0.29 +0.5
1,751,207 + CCNA_01632 0.39 +0.1
1,751,232 + CCNA_01632 0.45 -0.5
1,751,232 + CCNA_01632 0.45 -0.1
1,751,240 - CCNA_01632 0.47 +0.6
1,751,251 - CCNA_01632 0.49 -0.2
1,751,288 + CCNA_01632 0.57 +0.7
1,751,288 + CCNA_01632 0.57 -1.5
1,751,288 + CCNA_01632 0.57 -0.2
1,751,288 + CCNA_01632 0.57 -1.0
1,751,288 + CCNA_01632 0.57 -1.6
1,751,288 + CCNA_01632 0.57 -0.4
1,751,288 + CCNA_01632 0.57 -1.0
1,751,296 - CCNA_01632 0.59 +0.1
1,751,296 - CCNA_01632 0.59 -1.8
1,751,296 - CCNA_01632 0.59 -1.1
1,751,296 - CCNA_01632 0.59 -1.1
1,751,296 - CCNA_01632 0.59 -0.8
1,751,296 - CCNA_01632 0.59 -0.8
1,751,298 + CCNA_01632 0.59 -1.4
1,751,298 + CCNA_01632 0.59 +1.0
1,751,317 - CCNA_01632 0.63 +0.8
1,751,400 + CCNA_01632 0.81 -0.6
1,751,454 + -0.3
1,751,454 + -1.5
1,751,454 + -0.2
1,751,454 + +1.3
1,751,462 - +0.7
1,751,462 - +1.2
1,751,467 + +0.5
1,751,475 - +0.2
1,751,475 - +0.4
1,751,493 + -0.9
1,751,493 + +0.8
1,751,495 + -0.7
1,751,509 - -0.3
1,751,526 - +0.4
1,751,626 - -0.0
1,751,626 - -0.6
1,751,626 - +0.1

Or see this region's nucleotide sequence