Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01348 and CCNA_01349 are separated by 272 nucleotides CCNA_01349 and CCNA_01350 are separated by 14 nucleotides CCNA_01350 and CCNA_01351 are separated by 127 nucleotides CCNA_01351 and CCNA_01352 are separated by 0 nucleotides
CCNA_01348: CCNA_01348 - hypothetical protein, at 1,461,471 to 1,462,034
_01348
CCNA_01349: CCNA_01349 - transposase, at 1,462,307 to 1,462,717
_01349
CCNA_01350: CCNA_01350 - transposase DDE domain protein, at 1,462,732 to 1,463,100
_01350
CCNA_01351: CCNA_01351 - two-component response regulator protein, at 1,463,228 to 1,463,956
_01351
CCNA_01352: CCNA_01352 - two component sensor histidine kinase, at 1,463,957 to 1,465,588
_01352
Position (kb)
1462
1463
1464 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1461.737 kb on - strand, within CCNA_01348 at 1461.762 kb on + strand, within CCNA_01348 at 1461.770 kb on - strand, within CCNA_01348 at 1461.782 kb on - strand, within CCNA_01348 at 1461.821 kb on + strand, within CCNA_01348 at 1461.846 kb on - strand, within CCNA_01348 at 1461.857 kb on - strand, within CCNA_01348 at 1461.888 kb on + strand, within CCNA_01348 at 1461.889 kb on - strand, within CCNA_01348 at 1461.934 kb on - strand, within CCNA_01348 at 1461.953 kb on + strand, within CCNA_01348 at 1461.953 kb on + strand, within CCNA_01348 at 1461.996 kb on + strand at 1461.999 kb on + strand at 1462.007 kb on - strand at 1462.011 kb on + strand at 1462.015 kb on - strand at 1462.016 kb on + strand at 1462.019 kb on - strand at 1462.024 kb on - strand at 1462.024 kb on - strand at 1462.056 kb on - strand at 1462.057 kb on + strand at 1462.061 kb on + strand at 1462.061 kb on + strand at 1462.061 kb on + strand at 1462.065 kb on - strand at 1462.092 kb on + strand at 1462.112 kb on + strand at 1462.160 kb on + strand at 1462.168 kb on - strand at 1462.168 kb on - strand at 1462.231 kb on - strand at 1462.233 kb on + strand at 1462.233 kb on + strand at 1462.241 kb on - strand at 1462.270 kb on - strand at 1462.270 kb on - strand at 1462.270 kb on - strand at 1462.287 kb on - strand at 1463.159 kb on - strand at 1463.342 kb on + strand, within CCNA_01351 at 1463.371 kb on - strand, within CCNA_01351 at 1463.371 kb on - strand, within CCNA_01351 at 1463.385 kb on + strand, within CCNA_01351 at 1463.385 kb on + strand, within CCNA_01351 at 1463.385 kb on - strand, within CCNA_01351 at 1463.414 kb on + strand, within CCNA_01351 at 1463.422 kb on - strand, within CCNA_01351 at 1463.444 kb on - strand, within CCNA_01351 at 1463.444 kb on - strand, within CCNA_01351 at 1463.446 kb on + strand, within CCNA_01351 at 1463.474 kb on + strand, within CCNA_01351 at 1463.628 kb on + strand, within CCNA_01351 at 1463.677 kb on + strand, within CCNA_01351 at 1463.683 kb on - strand, within CCNA_01351 at 1463.685 kb on - strand, within CCNA_01351 at 1463.693 kb on - strand, within CCNA_01351 at 1463.702 kb on + strand, within CCNA_01351 at 1463.712 kb on + strand, within CCNA_01351 at 1463.714 kb on + strand, within CCNA_01351 at 1463.749 kb on + strand, within CCNA_01351 at 1463.757 kb on - strand, within CCNA_01351 at 1463.842 kb on + strand, within CCNA_01351 at 1463.850 kb on - strand, within CCNA_01351 at 1463.860 kb on - strand, within CCNA_01351 at 1463.860 kb on - strand, within CCNA_01351 at 1463.869 kb on - strand, within CCNA_01351 at 1463.879 kb on - strand, within CCNA_01351 at 1463.987 kb on - strand at 1463.998 kb on + strand at 1463.999 kb on + strand at 1463.999 kb on + strand at 1464.004 kb on + strand at 1464.007 kb on - strand at 1464.007 kb on - strand at 1464.024 kb on - strand at 1464.040 kb on + strand at 1464.043 kb on - strand at 1464.048 kb on - strand at 1464.048 kb on - strand at 1464.088 kb on + strand at 1464.088 kb on + strand at 1464.088 kb on + strand at 1464.096 kb on - strand at 1464.096 kb on - strand at 1464.096 kb on - strand at 1464.096 kb on - strand at 1464.096 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,461,737 - CCNA_01348 0.47 -0.2 1,461,762 + CCNA_01348 0.52 +0.2 1,461,770 - CCNA_01348 0.53 -0.1 1,461,782 - CCNA_01348 0.55 -0.4 1,461,821 + CCNA_01348 0.62 +0.1 1,461,846 - CCNA_01348 0.66 -0.1 1,461,857 - CCNA_01348 0.68 -0.3 1,461,888 + CCNA_01348 0.74 +1.1 1,461,889 - CCNA_01348 0.74 +0.2 1,461,934 - CCNA_01348 0.82 -0.7 1,461,953 + CCNA_01348 0.85 +0.5 1,461,953 + CCNA_01348 0.85 -0.0 1,461,996 + -1.8 1,461,999 + +0.1 1,462,007 - -1.2 1,462,011 + +0.8 1,462,015 - +2.1 1,462,016 + -0.3 1,462,019 - +1.2 1,462,024 - +0.6 1,462,024 - -0.6 1,462,056 - +0.1 1,462,057 + -0.1 1,462,061 + +0.5 1,462,061 + +0.6 1,462,061 + -0.1 1,462,065 - +0.6 1,462,092 + -0.3 1,462,112 + -0.4 1,462,160 + -0.3 1,462,168 - +0.6 1,462,168 - -0.7 1,462,231 - -0.2 1,462,233 + -0.3 1,462,233 + -0.1 1,462,241 - +1.5 1,462,270 - -1.5 1,462,270 - +0.1 1,462,270 - -0.3 1,462,287 - +0.4 1,463,159 - +0.4 1,463,342 + CCNA_01351 0.16 -0.9 1,463,371 - CCNA_01351 0.20 +0.3 1,463,371 - CCNA_01351 0.20 -1.9 1,463,385 + CCNA_01351 0.22 -0.9 1,463,385 + CCNA_01351 0.22 -0.0 1,463,385 - CCNA_01351 0.22 +0.7 1,463,414 + CCNA_01351 0.26 -2.3 1,463,422 - CCNA_01351 0.27 +0.3 1,463,444 - CCNA_01351 0.30 -0.1 1,463,444 - CCNA_01351 0.30 +0.2 1,463,446 + CCNA_01351 0.30 +0.3 1,463,474 + CCNA_01351 0.34 -0.3 1,463,628 + CCNA_01351 0.55 -0.4 1,463,677 + CCNA_01351 0.62 -1.0 1,463,683 - CCNA_01351 0.62 +0.2 1,463,685 - CCNA_01351 0.63 +0.6 1,463,693 - CCNA_01351 0.64 +0.8 1,463,702 + CCNA_01351 0.65 +0.5 1,463,712 + CCNA_01351 0.66 -0.7 1,463,714 + CCNA_01351 0.67 -0.7 1,463,749 + CCNA_01351 0.71 -0.2 1,463,757 - CCNA_01351 0.73 -0.8 1,463,842 + CCNA_01351 0.84 -0.5 1,463,850 - CCNA_01351 0.85 -0.2 1,463,860 - CCNA_01351 0.87 +0.6 1,463,860 - CCNA_01351 0.87 +0.1 1,463,869 - CCNA_01351 0.88 +0.8 1,463,879 - CCNA_01351 0.89 -0.0 1,463,987 - +0.6 1,463,998 + -0.9 1,463,999 + -0.7 1,463,999 + -0.3 1,464,004 + +0.6 1,464,007 - +0.5 1,464,007 - +0.5 1,464,024 - -0.4 1,464,040 + +0.5 1,464,043 - +0.8 1,464,048 - +0.0 1,464,048 - -0.5 1,464,088 + -1.6 1,464,088 + +0.8 1,464,088 + +0.2 1,464,096 - +0.0 1,464,096 - +0.8 1,464,096 - +1.0 1,464,096 - +0.3 1,464,096 - -0.1
Or see this region's nucleotide sequence