Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01332 and CCNA_01333 are separated by 443 nucleotides CCNA_01333 and CCNA_01334 are separated by 166 nucleotides CCNA_01334 and CCNA_01335 overlap by 1 nucleotides
CCNA_01332: CCNA_01332 - LSU ribosomal protein L17P, at 1,445,475 to 1,445,888
_01332
CCNA_01333: CCNA_01333 - hypothetical protein, at 1,446,332 to 1,446,724
_01333
CCNA_01334: CCNA_01334 - ABC2-family membrane transporter, at 1,446,891 to 1,447,721
_01334
CCNA_01335: CCNA_01335 - ABC-type multidrug transport system, ATPase component, at 1,447,721 to 1,448,638
_01335
Position (kb)
1446
1447 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1445.384 kb on + strand at 1445.849 kb on + strand at 1445.856 kb on + strand at 1445.968 kb on - strand at 1445.990 kb on + strand at 1445.999 kb on - strand at 1446.008 kb on + strand at 1446.046 kb on - strand at 1446.046 kb on - strand at 1446.046 kb on - strand at 1446.076 kb on - strand at 1446.116 kb on + strand at 1446.116 kb on + strand at 1446.116 kb on + strand at 1446.184 kb on + strand at 1446.234 kb on - strand at 1446.307 kb on + strand at 1446.577 kb on + strand, within CCNA_01333 at 1446.644 kb on - strand, within CCNA_01333 at 1446.649 kb on - strand, within CCNA_01333 at 1446.649 kb on - strand, within CCNA_01333 at 1446.675 kb on + strand, within CCNA_01333 at 1446.722 kb on - strand at 1446.761 kb on + strand at 1446.764 kb on - strand at 1446.794 kb on + strand at 1446.802 kb on - strand at 1446.810 kb on + strand at 1446.835 kb on - strand at 1446.837 kb on - strand at 1446.837 kb on - strand at 1446.869 kb on + strand at 1446.929 kb on - strand at 1446.952 kb on + strand at 1446.952 kb on + strand at 1446.982 kb on - strand, within CCNA_01334 at 1447.000 kb on + strand, within CCNA_01334 at 1447.005 kb on + strand, within CCNA_01334 at 1447.010 kb on + strand, within CCNA_01334 at 1447.035 kb on + strand, within CCNA_01334 at 1447.070 kb on - strand, within CCNA_01334 at 1447.084 kb on + strand, within CCNA_01334 at 1447.092 kb on - strand, within CCNA_01334 at 1447.111 kb on + strand, within CCNA_01334 at 1447.111 kb on + strand, within CCNA_01334 at 1447.125 kb on + strand, within CCNA_01334 at 1447.195 kb on - strand, within CCNA_01334 at 1447.215 kb on + strand, within CCNA_01334 at 1447.223 kb on - strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.368 kb on - strand, within CCNA_01334 at 1447.368 kb on - strand, within CCNA_01334 at 1447.368 kb on - strand, within CCNA_01334 at 1447.368 kb on - strand, within CCNA_01334 at 1447.368 kb on - strand, within CCNA_01334 at 1447.368 kb on - strand, within CCNA_01334 at 1447.414 kb on - strand, within CCNA_01334 at 1447.415 kb on - strand, within CCNA_01334 at 1447.415 kb on - strand, within CCNA_01334 at 1447.417 kb on + strand, within CCNA_01334 at 1447.429 kb on + strand, within CCNA_01334 at 1447.429 kb on + strand, within CCNA_01334 at 1447.437 kb on - strand, within CCNA_01334 at 1447.489 kb on + strand, within CCNA_01334 at 1447.509 kb on + strand, within CCNA_01334 at 1447.534 kb on + strand, within CCNA_01334 at 1447.539 kb on - strand, within CCNA_01334 at 1447.552 kb on - strand, within CCNA_01334 at 1447.553 kb on + strand, within CCNA_01334 at 1447.607 kb on - strand, within CCNA_01334 at 1447.612 kb on - strand, within CCNA_01334 at 1447.630 kb on - strand, within CCNA_01334 at 1447.662 kb on - strand at 1447.662 kb on - strand at 1447.662 kb on - strand at 1447.662 kb on - strand at 1447.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,445,384 + +0.8 1,445,849 + +0.4 1,445,856 + -0.6 1,445,968 - -0.4 1,445,990 + +0.6 1,445,999 - +0.3 1,446,008 + +0.8 1,446,046 - -0.4 1,446,046 - +0.2 1,446,046 - +1.0 1,446,076 - -0.0 1,446,116 + -0.5 1,446,116 + +0.1 1,446,116 + +0.1 1,446,184 + -1.3 1,446,234 - -0.3 1,446,307 + -0.5 1,446,577 + CCNA_01333 0.62 -0.3 1,446,644 - CCNA_01333 0.79 +0.8 1,446,649 - CCNA_01333 0.81 +0.8 1,446,649 - CCNA_01333 0.81 +0.3 1,446,675 + CCNA_01333 0.87 -2.2 1,446,722 - +0.5 1,446,761 + -0.2 1,446,764 - +1.3 1,446,794 + -0.7 1,446,802 - -0.1 1,446,810 + +0.3 1,446,835 - +0.2 1,446,837 - -2.0 1,446,837 - -2.1 1,446,869 + -0.6 1,446,929 - -0.4 1,446,952 + -0.7 1,446,952 + -0.7 1,446,982 - CCNA_01334 0.11 +0.1 1,447,000 + CCNA_01334 0.13 -1.3 1,447,005 + CCNA_01334 0.14 -0.3 1,447,010 + CCNA_01334 0.14 -0.8 1,447,035 + CCNA_01334 0.17 -2.4 1,447,070 - CCNA_01334 0.22 +2.1 1,447,084 + CCNA_01334 0.23 -0.3 1,447,092 - CCNA_01334 0.24 -0.4 1,447,111 + CCNA_01334 0.26 -0.5 1,447,111 + CCNA_01334 0.26 -0.4 1,447,125 + CCNA_01334 0.28 +0.3 1,447,195 - CCNA_01334 0.37 +0.3 1,447,215 + CCNA_01334 0.39 -0.4 1,447,223 - CCNA_01334 0.40 +0.7 1,447,360 + CCNA_01334 0.56 +1.1 1,447,360 + CCNA_01334 0.56 +0.1 1,447,360 + CCNA_01334 0.56 +0.2 1,447,360 + CCNA_01334 0.56 +1.2 1,447,360 + CCNA_01334 0.56 -0.4 1,447,360 + CCNA_01334 0.56 +0.8 1,447,360 + CCNA_01334 0.56 -0.4 1,447,360 + CCNA_01334 0.56 +1.2 1,447,360 + CCNA_01334 0.56 -0.2 1,447,360 + CCNA_01334 0.56 +0.1 1,447,368 - CCNA_01334 0.57 +0.4 1,447,368 - CCNA_01334 0.57 -0.4 1,447,368 - CCNA_01334 0.57 -0.6 1,447,368 - CCNA_01334 0.57 +0.8 1,447,368 - CCNA_01334 0.57 +0.0 1,447,368 - CCNA_01334 0.57 -0.1 1,447,414 - CCNA_01334 0.63 +0.3 1,447,415 - CCNA_01334 0.63 +0.3 1,447,415 - CCNA_01334 0.63 +1.4 1,447,417 + CCNA_01334 0.63 +0.2 1,447,429 + CCNA_01334 0.65 -0.3 1,447,429 + CCNA_01334 0.65 -0.2 1,447,437 - CCNA_01334 0.66 +0.4 1,447,489 + CCNA_01334 0.72 +0.1 1,447,509 + CCNA_01334 0.74 -0.5 1,447,534 + CCNA_01334 0.77 -1.0 1,447,539 - CCNA_01334 0.78 +0.3 1,447,552 - CCNA_01334 0.80 -0.0 1,447,553 + CCNA_01334 0.80 -1.2 1,447,607 - CCNA_01334 0.86 +1.3 1,447,612 - CCNA_01334 0.87 +0.3 1,447,630 - CCNA_01334 0.89 -0.1 1,447,662 - -0.3 1,447,662 - +0.5 1,447,662 - +0.1 1,447,662 - +0.6 1,447,662 - +0.7
Or see this region's nucleotide sequence