Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01333

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01332 and CCNA_01333 are separated by 443 nucleotidesCCNA_01333 and CCNA_01334 are separated by 166 nucleotidesCCNA_01334 and CCNA_01335 overlap by 1 nucleotides CCNA_01332: CCNA_01332 - LSU ribosomal protein L17P, at 1,445,475 to 1,445,888 _01332 CCNA_01333: CCNA_01333 - hypothetical protein, at 1,446,332 to 1,446,724 _01333 CCNA_01334: CCNA_01334 - ABC2-family membrane transporter, at 1,446,891 to 1,447,721 _01334 CCNA_01335: CCNA_01335 - ABC-type multidrug transport system, ATPase component, at 1,447,721 to 1,448,638 _01335 Position (kb) 1446 1447Strain fitness (log2 ratio) -2 -1 0 1 2at 1445.384 kb on + strandat 1445.849 kb on + strandat 1445.856 kb on + strandat 1445.968 kb on - strandat 1445.990 kb on + strandat 1445.999 kb on - strandat 1446.008 kb on + strandat 1446.046 kb on - strandat 1446.046 kb on - strandat 1446.046 kb on - strandat 1446.076 kb on - strandat 1446.116 kb on + strandat 1446.116 kb on + strandat 1446.116 kb on + strandat 1446.184 kb on + strandat 1446.234 kb on - strandat 1446.307 kb on + strandat 1446.577 kb on + strand, within CCNA_01333at 1446.644 kb on - strand, within CCNA_01333at 1446.649 kb on - strand, within CCNA_01333at 1446.649 kb on - strand, within CCNA_01333at 1446.675 kb on + strand, within CCNA_01333at 1446.722 kb on - strandat 1446.761 kb on + strandat 1446.764 kb on - strandat 1446.794 kb on + strandat 1446.802 kb on - strandat 1446.810 kb on + strandat 1446.835 kb on - strandat 1446.837 kb on - strandat 1446.837 kb on - strandat 1446.869 kb on + strandat 1446.929 kb on - strandat 1446.952 kb on + strandat 1446.952 kb on + strandat 1446.982 kb on - strand, within CCNA_01334at 1447.000 kb on + strand, within CCNA_01334at 1447.005 kb on + strand, within CCNA_01334at 1447.010 kb on + strand, within CCNA_01334at 1447.035 kb on + strand, within CCNA_01334at 1447.070 kb on - strand, within CCNA_01334at 1447.084 kb on + strand, within CCNA_01334at 1447.092 kb on - strand, within CCNA_01334at 1447.111 kb on + strand, within CCNA_01334at 1447.111 kb on + strand, within CCNA_01334at 1447.125 kb on + strand, within CCNA_01334at 1447.195 kb on - strand, within CCNA_01334at 1447.215 kb on + strand, within CCNA_01334at 1447.223 kb on - strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.368 kb on - strand, within CCNA_01334at 1447.368 kb on - strand, within CCNA_01334at 1447.368 kb on - strand, within CCNA_01334at 1447.368 kb on - strand, within CCNA_01334at 1447.368 kb on - strand, within CCNA_01334at 1447.368 kb on - strand, within CCNA_01334at 1447.414 kb on - strand, within CCNA_01334at 1447.415 kb on - strand, within CCNA_01334at 1447.415 kb on - strand, within CCNA_01334at 1447.417 kb on + strand, within CCNA_01334at 1447.429 kb on + strand, within CCNA_01334at 1447.429 kb on + strand, within CCNA_01334at 1447.437 kb on - strand, within CCNA_01334at 1447.489 kb on + strand, within CCNA_01334at 1447.509 kb on + strand, within CCNA_01334at 1447.534 kb on + strand, within CCNA_01334at 1447.539 kb on - strand, within CCNA_01334at 1447.552 kb on - strand, within CCNA_01334at 1447.553 kb on + strand, within CCNA_01334at 1447.607 kb on - strand, within CCNA_01334at 1447.612 kb on - strand, within CCNA_01334at 1447.630 kb on - strand, within CCNA_01334at 1447.662 kb on - strandat 1447.662 kb on - strandat 1447.662 kb on - strandat 1447.662 kb on - strandat 1447.662 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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1,445,384 + +0.8
1,445,849 + +0.4
1,445,856 + -0.6
1,445,968 - -0.4
1,445,990 + +0.6
1,445,999 - +0.3
1,446,008 + +0.8
1,446,046 - -0.4
1,446,046 - +0.2
1,446,046 - +1.0
1,446,076 - -0.0
1,446,116 + -0.5
1,446,116 + +0.1
1,446,116 + +0.1
1,446,184 + -1.3
1,446,234 - -0.3
1,446,307 + -0.5
1,446,577 + CCNA_01333 0.62 -0.3
1,446,644 - CCNA_01333 0.79 +0.8
1,446,649 - CCNA_01333 0.81 +0.8
1,446,649 - CCNA_01333 0.81 +0.3
1,446,675 + CCNA_01333 0.87 -2.2
1,446,722 - +0.5
1,446,761 + -0.2
1,446,764 - +1.3
1,446,794 + -0.7
1,446,802 - -0.1
1,446,810 + +0.3
1,446,835 - +0.2
1,446,837 - -2.0
1,446,837 - -2.1
1,446,869 + -0.6
1,446,929 - -0.4
1,446,952 + -0.7
1,446,952 + -0.7
1,446,982 - CCNA_01334 0.11 +0.1
1,447,000 + CCNA_01334 0.13 -1.3
1,447,005 + CCNA_01334 0.14 -0.3
1,447,010 + CCNA_01334 0.14 -0.8
1,447,035 + CCNA_01334 0.17 -2.4
1,447,070 - CCNA_01334 0.22 +2.1
1,447,084 + CCNA_01334 0.23 -0.3
1,447,092 - CCNA_01334 0.24 -0.4
1,447,111 + CCNA_01334 0.26 -0.5
1,447,111 + CCNA_01334 0.26 -0.4
1,447,125 + CCNA_01334 0.28 +0.3
1,447,195 - CCNA_01334 0.37 +0.3
1,447,215 + CCNA_01334 0.39 -0.4
1,447,223 - CCNA_01334 0.40 +0.7
1,447,360 + CCNA_01334 0.56 +1.1
1,447,360 + CCNA_01334 0.56 +0.1
1,447,360 + CCNA_01334 0.56 +0.2
1,447,360 + CCNA_01334 0.56 +1.2
1,447,360 + CCNA_01334 0.56 -0.4
1,447,360 + CCNA_01334 0.56 +0.8
1,447,360 + CCNA_01334 0.56 -0.4
1,447,360 + CCNA_01334 0.56 +1.2
1,447,360 + CCNA_01334 0.56 -0.2
1,447,360 + CCNA_01334 0.56 +0.1
1,447,368 - CCNA_01334 0.57 +0.4
1,447,368 - CCNA_01334 0.57 -0.4
1,447,368 - CCNA_01334 0.57 -0.6
1,447,368 - CCNA_01334 0.57 +0.8
1,447,368 - CCNA_01334 0.57 +0.0
1,447,368 - CCNA_01334 0.57 -0.1
1,447,414 - CCNA_01334 0.63 +0.3
1,447,415 - CCNA_01334 0.63 +0.3
1,447,415 - CCNA_01334 0.63 +1.4
1,447,417 + CCNA_01334 0.63 +0.2
1,447,429 + CCNA_01334 0.65 -0.3
1,447,429 + CCNA_01334 0.65 -0.2
1,447,437 - CCNA_01334 0.66 +0.4
1,447,489 + CCNA_01334 0.72 +0.1
1,447,509 + CCNA_01334 0.74 -0.5
1,447,534 + CCNA_01334 0.77 -1.0
1,447,539 - CCNA_01334 0.78 +0.3
1,447,552 - CCNA_01334 0.80 -0.0
1,447,553 + CCNA_01334 0.80 -1.2
1,447,607 - CCNA_01334 0.86 +1.3
1,447,612 - CCNA_01334 0.87 +0.3
1,447,630 - CCNA_01334 0.89 -0.1
1,447,662 - -0.3
1,447,662 - +0.5
1,447,662 - +0.1
1,447,662 - +0.6
1,447,662 - +0.7

Or see this region's nucleotide sequence