Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01268 and CCNA_01269 are separated by 280 nucleotides CCNA_01269 and CCNA_01270 are separated by 56 nucleotides CCNA_01270 and CCNA_01271 are separated by 148 nucleotides CCNA_01271 and CCNA_01272 are separated by 7 nucleotides
CCNA_01268: CCNA_01268 - cytochrome c, at 1,396,765 to 1,397,271
_01268
CCNA_01269: CCNA_01269 - GcrA superfamily protein, at 1,397,552 to 1,398,055
_01269
CCNA_01270: CCNA_01270 - hypothetical protein, at 1,398,112 to 1,398,321
_01270
CCNA_01271: CCNA_01271 - MarR-family transcriptional regulator, at 1,398,470 to 1,399,003
_01271
CCNA_01272: CCNA_01272 - peptidyl-tRNA hydrolase family protein, at 1,399,011 to 1,399,442
_01272
Position (kb)
1398
1399 Strain fitness (log2 ratio)
-2
-1
0
1 at 1397.141 kb on - strand, within CCNA_01268 at 1397.208 kb on + strand, within CCNA_01268 at 1397.208 kb on + strand, within CCNA_01268 at 1397.208 kb on + strand, within CCNA_01268 at 1397.216 kb on - strand, within CCNA_01268 at 1397.276 kb on - strand at 1397.330 kb on - strand at 1397.347 kb on - strand at 1397.398 kb on - strand at 1397.398 kb on - strand at 1397.398 kb on - strand at 1397.479 kb on - strand at 1397.530 kb on + strand at 1397.533 kb on - strand at 1397.535 kb on + strand at 1397.538 kb on - strand at 1397.557 kb on - strand at 1397.557 kb on - strand at 1397.557 kb on - strand at 1397.589 kb on - strand at 1397.635 kb on - strand, within CCNA_01269 at 1397.782 kb on - strand, within CCNA_01269 at 1397.841 kb on + strand, within CCNA_01269 at 1397.841 kb on + strand, within CCNA_01269 at 1397.841 kb on + strand, within CCNA_01269 at 1397.849 kb on - strand, within CCNA_01269 at 1397.849 kb on - strand, within CCNA_01269 at 1397.849 kb on - strand, within CCNA_01269 at 1397.849 kb on - strand, within CCNA_01269 at 1397.946 kb on - strand, within CCNA_01269 at 1397.946 kb on - strand, within CCNA_01269 at 1397.993 kb on - strand, within CCNA_01269 at 1398.002 kb on + strand, within CCNA_01269 at 1398.008 kb on + strand at 1398.016 kb on - strand at 1398.018 kb on - strand at 1398.060 kb on + strand at 1398.068 kb on - strand at 1398.117 kb on - strand at 1398.121 kb on + strand at 1398.124 kb on - strand at 1398.240 kb on + strand, within CCNA_01270 at 1398.293 kb on - strand, within CCNA_01270 at 1398.301 kb on - strand at 1398.336 kb on - strand at 1398.359 kb on - strand at 1398.369 kb on - strand at 1398.369 kb on - strand at 1398.384 kb on - strand at 1398.394 kb on + strand at 1398.424 kb on + strand at 1398.463 kb on + strand at 1398.506 kb on + strand at 1398.506 kb on + strand at 1398.523 kb on + strand at 1398.559 kb on + strand, within CCNA_01271 at 1398.561 kb on - strand, within CCNA_01271 at 1398.571 kb on - strand, within CCNA_01271 at 1398.672 kb on - strand, within CCNA_01271 at 1398.707 kb on + strand, within CCNA_01271 at 1398.707 kb on + strand, within CCNA_01271 at 1398.707 kb on + strand, within CCNA_01271 at 1398.707 kb on + strand, within CCNA_01271 at 1398.707 kb on + strand, within CCNA_01271 at 1398.707 kb on + strand, within CCNA_01271 at 1398.707 kb on + strand, within CCNA_01271 at 1398.707 kb on + strand, within CCNA_01271 at 1398.707 kb on + strand, within CCNA_01271 at 1398.707 kb on + strand, within CCNA_01271 at 1398.715 kb on - strand, within CCNA_01271 at 1398.715 kb on - strand, within CCNA_01271 at 1398.715 kb on - strand, within CCNA_01271 at 1398.715 kb on - strand, within CCNA_01271 at 1398.715 kb on - strand, within CCNA_01271 at 1398.715 kb on - strand, within CCNA_01271 at 1398.715 kb on - strand, within CCNA_01271 at 1398.715 kb on - strand, within CCNA_01271 at 1398.715 kb on - strand, within CCNA_01271 at 1398.715 kb on - strand, within CCNA_01271 at 1398.715 kb on - strand, within CCNA_01271 at 1398.761 kb on + strand, within CCNA_01271 at 1398.874 kb on + strand, within CCNA_01271 at 1398.874 kb on + strand, within CCNA_01271 at 1398.880 kb on - strand, within CCNA_01271 at 1398.896 kb on + strand, within CCNA_01271 at 1398.904 kb on + strand, within CCNA_01271 at 1398.942 kb on + strand, within CCNA_01271 at 1399.005 kb on - strand at 1399.005 kb on - strand at 1399.039 kb on - strand at 1399.050 kb on - strand at 1399.069 kb on + strand, within CCNA_01272 at 1399.086 kb on - strand, within CCNA_01272 at 1399.100 kb on - strand, within CCNA_01272 at 1399.128 kb on - strand, within CCNA_01272 at 1399.171 kb on - strand, within CCNA_01272 at 1399.218 kb on + strand, within CCNA_01272 at 1399.230 kb on + strand, within CCNA_01272 at 1399.238 kb on - strand, within CCNA_01272 at 1399.238 kb on - strand, within CCNA_01272 at 1399.238 kb on - strand, within CCNA_01272 at 1399.238 kb on - strand, within CCNA_01272 at 1399.238 kb on - strand, within CCNA_01272 at 1399.238 kb on - strand, within CCNA_01272 at 1399.243 kb on - strand, within CCNA_01272 at 1399.254 kb on - strand, within CCNA_01272 at 1399.279 kb on + strand, within CCNA_01272 at 1399.279 kb on + strand, within CCNA_01272 at 1399.315 kb on - strand, within CCNA_01272 at 1399.319 kb on + strand, within CCNA_01272
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,397,141 - CCNA_01268 0.74 -0.1 1,397,208 + CCNA_01268 0.87 +0.4 1,397,208 + CCNA_01268 0.87 -0.2 1,397,208 + CCNA_01268 0.87 -0.2 1,397,216 - CCNA_01268 0.89 -0.7 1,397,276 - +0.8 1,397,330 - -0.5 1,397,347 - -0.2 1,397,398 - -0.9 1,397,398 - -0.5 1,397,398 - +0.2 1,397,479 - +0.3 1,397,530 + +0.1 1,397,533 - +0.1 1,397,535 + -0.8 1,397,538 - -1.2 1,397,557 - -1.7 1,397,557 - -1.3 1,397,557 - -1.6 1,397,589 - -0.8 1,397,635 - CCNA_01269 0.16 +0.7 1,397,782 - CCNA_01269 0.46 +0.4 1,397,841 + CCNA_01269 0.57 -2.6 1,397,841 + CCNA_01269 0.57 -2.3 1,397,841 + CCNA_01269 0.57 -0.4 1,397,849 - CCNA_01269 0.59 +1.2 1,397,849 - CCNA_01269 0.59 -0.1 1,397,849 - CCNA_01269 0.59 -0.5 1,397,849 - CCNA_01269 0.59 -0.7 1,397,946 - CCNA_01269 0.78 -0.5 1,397,946 - CCNA_01269 0.78 -0.8 1,397,993 - CCNA_01269 0.88 -0.0 1,398,002 + CCNA_01269 0.89 -0.7 1,398,008 + -0.0 1,398,016 - +0.2 1,398,018 - +0.2 1,398,060 + -1.0 1,398,068 - -2.4 1,398,117 - +0.7 1,398,121 + +0.7 1,398,124 - -0.0 1,398,240 + CCNA_01270 0.61 -2.7 1,398,293 - CCNA_01270 0.86 -0.6 1,398,301 - +1.4 1,398,336 - +0.0 1,398,359 - +0.6 1,398,369 - -0.7 1,398,369 - -0.3 1,398,384 - -0.9 1,398,394 + -0.0 1,398,424 + +0.3 1,398,463 + +0.1 1,398,506 + +0.5 1,398,506 + +0.6 1,398,523 + +0.6 1,398,559 + CCNA_01271 0.17 +0.3 1,398,561 - CCNA_01271 0.17 -0.8 1,398,571 - CCNA_01271 0.19 +0.2 1,398,672 - CCNA_01271 0.38 -0.4 1,398,707 + CCNA_01271 0.44 -1.0 1,398,707 + CCNA_01271 0.44 +0.5 1,398,707 + CCNA_01271 0.44 -0.4 1,398,707 + CCNA_01271 0.44 +0.4 1,398,707 + CCNA_01271 0.44 -0.2 1,398,707 + CCNA_01271 0.44 +0.9 1,398,707 + CCNA_01271 0.44 +0.3 1,398,707 + CCNA_01271 0.44 +0.8 1,398,707 + CCNA_01271 0.44 -0.4 1,398,707 + CCNA_01271 0.44 -1.0 1,398,715 - CCNA_01271 0.46 -1.9 1,398,715 - CCNA_01271 0.46 -0.2 1,398,715 - CCNA_01271 0.46 +0.2 1,398,715 - CCNA_01271 0.46 -1.7 1,398,715 - CCNA_01271 0.46 +0.7 1,398,715 - CCNA_01271 0.46 -0.7 1,398,715 - CCNA_01271 0.46 -0.8 1,398,715 - CCNA_01271 0.46 +1.6 1,398,715 - CCNA_01271 0.46 -1.4 1,398,715 - CCNA_01271 0.46 -0.1 1,398,715 - CCNA_01271 0.46 -1.5 1,398,761 + CCNA_01271 0.54 +1.1 1,398,874 + CCNA_01271 0.76 -0.7 1,398,874 + CCNA_01271 0.76 +0.2 1,398,880 - CCNA_01271 0.77 -0.5 1,398,896 + CCNA_01271 0.80 +0.2 1,398,904 + CCNA_01271 0.81 +1.6 1,398,942 + CCNA_01271 0.88 +0.2 1,399,005 - -0.4 1,399,005 - -0.4 1,399,039 - +0.2 1,399,050 - +0.1 1,399,069 + CCNA_01272 0.13 +0.3 1,399,086 - CCNA_01272 0.17 +0.1 1,399,100 - CCNA_01272 0.21 -0.0 1,399,128 - CCNA_01272 0.27 -0.3 1,399,171 - CCNA_01272 0.37 -0.0 1,399,218 + CCNA_01272 0.48 -0.5 1,399,230 + CCNA_01272 0.51 -0.2 1,399,238 - CCNA_01272 0.53 -1.4 1,399,238 - CCNA_01272 0.53 +0.6 1,399,238 - CCNA_01272 0.53 +0.6 1,399,238 - CCNA_01272 0.53 -0.1 1,399,238 - CCNA_01272 0.53 +1.4 1,399,238 - CCNA_01272 0.53 +0.0 1,399,243 - CCNA_01272 0.54 -0.3 1,399,254 - CCNA_01272 0.56 -0.2 1,399,279 + CCNA_01272 0.62 -0.4 1,399,279 + CCNA_01272 0.62 +0.6 1,399,315 - CCNA_01272 0.70 +0.1 1,399,319 + CCNA_01272 0.71 -0.1
Or see this region's nucleotide sequence