Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01253 and CCNA_01254 overlap by 1 nucleotides CCNA_01254 and CCNA_01255 are separated by 100 nucleotides CCNA_01255 and CCNA_01256 are separated by 437 nucleotides
CCNA_01253: CCNA_01253 - dihydrodipicolinate synthase, at 1,381,534 to 1,382,418
_01253
CCNA_01254: CCNA_01254 - SsrA-binding protein, at 1,382,418 to 1,382,876
_01254
CCNA_01255: CCNA_01255 - hypothetical protein, at 1,382,977 to 1,383,126
_01255
CCNA_01256: CCNA_01256 - hypothetical protein, at 1,383,564 to 1,384,559
_01256
Position (kb)
1382
1383 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1381.421 kb on + strand at 1381.421 kb on + strand at 1381.421 kb on + strand at 1381.421 kb on + strand at 1381.429 kb on - strand at 1381.465 kb on + strand at 1382.407 kb on + strand at 1382.412 kb on + strand at 1382.842 kb on + strand at 1382.860 kb on - strand at 1382.889 kb on + strand at 1382.889 kb on + strand at 1382.897 kb on - strand at 1382.979 kb on + strand at 1382.987 kb on - strand at 1382.989 kb on + strand at 1383.057 kb on - strand, within CCNA_01255 at 1383.058 kb on - strand, within CCNA_01255 at 1383.062 kb on + strand, within CCNA_01255 at 1383.082 kb on + strand, within CCNA_01255 at 1383.082 kb on + strand, within CCNA_01255 at 1383.083 kb on + strand, within CCNA_01255 at 1383.091 kb on - strand, within CCNA_01255 at 1383.102 kb on - strand, within CCNA_01255 at 1383.254 kb on - strand at 1383.297 kb on + strand at 1383.416 kb on + strand at 1383.444 kb on - strand at 1383.544 kb on + strand at 1383.551 kb on + strand at 1383.559 kb on - strand at 1383.562 kb on + strand at 1383.573 kb on + strand at 1383.587 kb on + strand at 1383.595 kb on - strand at 1383.601 kb on + strand at 1383.613 kb on + strand at 1383.614 kb on - strand at 1383.643 kb on + strand at 1383.664 kb on + strand, within CCNA_01256 at 1383.676 kb on + strand, within CCNA_01256 at 1383.681 kb on + strand, within CCNA_01256 at 1383.730 kb on - strand, within CCNA_01256 at 1383.754 kb on - strand, within CCNA_01256 at 1383.756 kb on + strand, within CCNA_01256 at 1383.764 kb on - strand, within CCNA_01256 at 1383.802 kb on + strand, within CCNA_01256 at 1383.802 kb on + strand, within CCNA_01256 at 1383.810 kb on - strand, within CCNA_01256 at 1383.810 kb on - strand, within CCNA_01256 at 1383.810 kb on - strand, within CCNA_01256 at 1383.866 kb on - strand, within CCNA_01256
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,381,421 + +2.1 1,381,421 + +0.3 1,381,421 + -0.8 1,381,421 + +0.2 1,381,429 - +0.9 1,381,465 + +0.1 1,382,407 + +0.3 1,382,412 + +0.4 1,382,842 + -0.6 1,382,860 - +0.8 1,382,889 + +0.1 1,382,889 + -0.2 1,382,897 - -0.2 1,382,979 + -0.4 1,382,987 - +0.9 1,382,989 + +0.9 1,383,057 - CCNA_01255 0.53 +0.4 1,383,058 - CCNA_01255 0.54 -1.2 1,383,062 + CCNA_01255 0.57 +0.9 1,383,082 + CCNA_01255 0.70 -0.0 1,383,082 + CCNA_01255 0.70 -1.6 1,383,083 + CCNA_01255 0.71 +0.3 1,383,091 - CCNA_01255 0.76 -0.8 1,383,102 - CCNA_01255 0.83 +0.3 1,383,254 - +0.3 1,383,297 + -2.8 1,383,416 + +0.9 1,383,444 - -0.1 1,383,544 + -0.0 1,383,551 + -1.1 1,383,559 - -0.1 1,383,562 + -2.0 1,383,573 + -1.7 1,383,587 + -0.3 1,383,595 - +0.2 1,383,601 + +0.3 1,383,613 + +2.1 1,383,614 - -0.5 1,383,643 + -0.3 1,383,664 + CCNA_01256 0.10 -0.1 1,383,676 + CCNA_01256 0.11 -1.0 1,383,681 + CCNA_01256 0.12 +0.4 1,383,730 - CCNA_01256 0.17 +0.5 1,383,754 - CCNA_01256 0.19 +0.4 1,383,756 + CCNA_01256 0.19 +2.3 1,383,764 - CCNA_01256 0.20 +1.4 1,383,802 + CCNA_01256 0.24 -0.4 1,383,802 + CCNA_01256 0.24 -0.3 1,383,810 - CCNA_01256 0.25 +0.3 1,383,810 - CCNA_01256 0.25 -0.5 1,383,810 - CCNA_01256 0.25 +0.4 1,383,866 - CCNA_01256 0.30 -0.6
Or see this region's nucleotide sequence