Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01175 and CCNA_01176 overlap by 4 nucleotides CCNA_01176 and CCNA_01177 are separated by 6 nucleotides
CCNA_01175: CCNA_01175 - uroporphyrin-III C-methyltransferase, at 1,294,712 to 1,295,635
_01175
CCNA_01176: CCNA_01176 - hypothetical protein, at 1,295,632 to 1,295,991
_01176
CCNA_01177: CCNA_01177 - sulfite reductase, beta subunit, at 1,295,998 to 1,297,656
_01177
Position (kb)
1295
1296 Strain fitness (log2 ratio)
-1
0
1 at 1294.637 kb on + strand at 1294.640 kb on - strand at 1294.683 kb on - strand at 1294.775 kb on + strand at 1294.793 kb on + strand at 1294.801 kb on + strand at 1294.821 kb on + strand, within CCNA_01175 at 1294.821 kb on + strand, within CCNA_01175 at 1294.830 kb on + strand, within CCNA_01175 at 1294.877 kb on + strand, within CCNA_01175 at 1295.018 kb on + strand, within CCNA_01175 at 1295.057 kb on - strand, within CCNA_01175 at 1295.063 kb on + strand, within CCNA_01175 at 1295.382 kb on + strand, within CCNA_01175 at 1295.472 kb on + strand, within CCNA_01175 at 1295.600 kb on - strand at 1295.611 kb on - strand at 1295.616 kb on + strand at 1295.624 kb on - strand at 1295.740 kb on - strand, within CCNA_01176 at 1295.864 kb on + strand, within CCNA_01176 at 1295.915 kb on + strand, within CCNA_01176 at 1295.931 kb on + strand, within CCNA_01176 at 1295.966 kb on + strand at 1295.988 kb on + strand at 1296.000 kb on + strand at 1296.142 kb on + strand at 1296.193 kb on + strand, within CCNA_01177 at 1296.343 kb on + strand, within CCNA_01177 at 1296.457 kb on + strand, within CCNA_01177 at 1296.548 kb on + strand, within CCNA_01177 at 1296.548 kb on + strand, within CCNA_01177 at 1296.562 kb on - strand, within CCNA_01177 at 1296.569 kb on + strand, within CCNA_01177 at 1296.590 kb on + strand, within CCNA_01177 at 1296.590 kb on + strand, within CCNA_01177 at 1296.590 kb on + strand, within CCNA_01177 at 1296.590 kb on + strand, within CCNA_01177 at 1296.628 kb on + strand, within CCNA_01177 at 1296.790 kb on + strand, within CCNA_01177 at 1296.845 kb on + strand, within CCNA_01177 at 1296.933 kb on + strand, within CCNA_01177 at 1296.933 kb on + strand, within CCNA_01177 at 1296.971 kb on + strand, within CCNA_01177 at 1296.988 kb on + strand, within CCNA_01177
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,294,637 + +0.2 1,294,640 - -0.7 1,294,683 - -0.1 1,294,775 + +1.5 1,294,793 + +0.1 1,294,801 + -0.3 1,294,821 + CCNA_01175 0.12 +0.1 1,294,821 + CCNA_01175 0.12 +0.6 1,294,830 + CCNA_01175 0.13 +0.4 1,294,877 + CCNA_01175 0.18 +0.0 1,295,018 + CCNA_01175 0.33 -0.1 1,295,057 - CCNA_01175 0.37 +0.1 1,295,063 + CCNA_01175 0.38 +1.0 1,295,382 + CCNA_01175 0.73 +0.0 1,295,472 + CCNA_01175 0.82 +0.8 1,295,600 - +0.4 1,295,611 - +0.0 1,295,616 + +0.4 1,295,624 - +0.4 1,295,740 - CCNA_01176 0.30 +0.1 1,295,864 + CCNA_01176 0.64 -0.6 1,295,915 + CCNA_01176 0.79 +0.2 1,295,931 + CCNA_01176 0.83 +0.7 1,295,966 + +0.1 1,295,988 + +0.1 1,296,000 + -0.2 1,296,142 + -0.9 1,296,193 + CCNA_01177 0.12 -0.0 1,296,343 + CCNA_01177 0.21 -0.2 1,296,457 + CCNA_01177 0.28 +1.1 1,296,548 + CCNA_01177 0.33 -0.0 1,296,548 + CCNA_01177 0.33 +0.6 1,296,562 - CCNA_01177 0.34 +0.7 1,296,569 + CCNA_01177 0.34 +1.5 1,296,590 + CCNA_01177 0.36 -0.1 1,296,590 + CCNA_01177 0.36 +0.1 1,296,590 + CCNA_01177 0.36 +0.1 1,296,590 + CCNA_01177 0.36 +0.6 1,296,628 + CCNA_01177 0.38 -0.1 1,296,790 + CCNA_01177 0.48 +0.6 1,296,845 + CCNA_01177 0.51 +0.4 1,296,933 + CCNA_01177 0.56 +0.5 1,296,933 + CCNA_01177 0.56 -0.1 1,296,971 + CCNA_01177 0.59 +0.5 1,296,988 + CCNA_01177 0.60 -0.8
Or see this region's nucleotide sequence