Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01070

Experiment: PYE no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01069 and CCNA_01070 are separated by 688 nucleotidesCCNA_01070 and CCNA_01071 are separated by 41 nucleotides CCNA_01069: CCNA_01069 - methyltransferase, at 1,174,284 to 1,175,819 _01069 CCNA_01070: CCNA_01070 - hypothetical protein, at 1,176,508 to 1,177,257 _01070 CCNA_01071: CCNA_01071 - alpha-ketoglutarate permease, at 1,177,299 to 1,178,732 _01071 Position (kb) 1176 1177 1178Strain fitness (log2 ratio) -2 -1 0 1at 1175.519 kb on - strand, within CCNA_01069at 1175.629 kb on + strand, within CCNA_01069at 1175.652 kb on + strand, within CCNA_01069at 1175.652 kb on + strand, within CCNA_01069at 1175.660 kb on - strand, within CCNA_01069at 1175.674 kb on + strandat 1175.735 kb on - strandat 1175.790 kb on + strandat 1176.089 kb on + strandat 1176.152 kb on + strandat 1176.160 kb on - strandat 1176.236 kb on + strandat 1176.238 kb on - strandat 1176.279 kb on + strandat 1176.343 kb on - strandat 1176.387 kb on - strandat 1176.480 kb on + strandat 1176.544 kb on + strandat 1176.544 kb on + strandat 1176.549 kb on + strandat 1176.549 kb on + strandat 1176.549 kb on + strandat 1176.549 kb on + strandat 1176.549 kb on + strandat 1176.552 kb on - strandat 1176.552 kb on - strandat 1176.557 kb on - strandat 1176.557 kb on - strandat 1176.557 kb on - strandat 1176.557 kb on - strandat 1176.557 kb on - strandat 1176.557 kb on - strandat 1176.562 kb on - strandat 1176.619 kb on + strand, within CCNA_01070at 1176.646 kb on - strand, within CCNA_01070at 1176.658 kb on + strand, within CCNA_01070at 1176.685 kb on - strand, within CCNA_01070at 1176.725 kb on + strand, within CCNA_01070at 1176.779 kb on - strand, within CCNA_01070at 1176.801 kb on - strand, within CCNA_01070at 1176.879 kb on - strand, within CCNA_01070at 1176.900 kb on - strand, within CCNA_01070at 1176.906 kb on + strand, within CCNA_01070at 1176.944 kb on + strand, within CCNA_01070at 1176.946 kb on - strand, within CCNA_01070at 1176.963 kb on + strand, within CCNA_01070at 1176.976 kb on + strand, within CCNA_01070at 1176.992 kb on + strand, within CCNA_01070at 1177.005 kb on - strand, within CCNA_01070at 1177.138 kb on + strand, within CCNA_01070at 1177.143 kb on - strand, within CCNA_01070at 1177.154 kb on + strand, within CCNA_01070at 1177.156 kb on + strand, within CCNA_01070at 1177.162 kb on - strand, within CCNA_01070at 1177.162 kb on - strand, within CCNA_01070at 1177.164 kb on - strand, within CCNA_01070at 1177.171 kb on + strand, within CCNA_01070at 1177.171 kb on + strand, within CCNA_01070at 1177.174 kb on - strand, within CCNA_01070at 1177.179 kb on - strand, within CCNA_01070at 1177.184 kb on + strandat 1177.219 kb on + strandat 1177.227 kb on - strandat 1177.260 kb on - strandat 1177.264 kb on + strandat 1177.264 kb on + strandat 1177.264 kb on + strandat 1177.264 kb on + strandat 1177.265 kb on + strandat 1177.265 kb on + strandat 1177.272 kb on - strandat 1177.297 kb on + strandat 1177.353 kb on + strandat 1177.353 kb on + strandat 1177.353 kb on + strandat 1177.353 kb on + strandat 1177.353 kb on + strandat 1177.356 kb on - strandat 1177.361 kb on - strandat 1177.361 kb on - strandat 1177.361 kb on - strandat 1177.361 kb on - strandat 1177.361 kb on - strandat 1177.361 kb on - strandat 1177.361 kb on - strandat 1177.361 kb on - strandat 1177.361 kb on - strandat 1177.366 kb on - strandat 1177.399 kb on - strandat 1177.442 kb on - strandat 1177.455 kb on - strand, within CCNA_01071at 1177.467 kb on - strand, within CCNA_01071at 1177.471 kb on + strand, within CCNA_01071at 1177.471 kb on + strand, within CCNA_01071at 1177.471 kb on + strand, within CCNA_01071at 1177.471 kb on + strand, within CCNA_01071at 1177.471 kb on + strand, within CCNA_01071at 1177.471 kb on + strand, within CCNA_01071at 1177.471 kb on + strand, within CCNA_01071at 1177.471 kb on + strand, within CCNA_01071at 1177.471 kb on + strand, within CCNA_01071at 1177.472 kb on - strand, within CCNA_01071at 1177.472 kb on - strand, within CCNA_01071at 1177.476 kb on + strand, within CCNA_01071at 1177.476 kb on + strand, within CCNA_01071at 1177.476 kb on + strand, within CCNA_01071at 1177.476 kb on + strand, within CCNA_01071at 1177.477 kb on - strand, within CCNA_01071at 1177.479 kb on - strand, within CCNA_01071at 1177.479 kb on - strand, within CCNA_01071at 1177.479 kb on - strand, within CCNA_01071at 1177.479 kb on - strand, within CCNA_01071at 1177.479 kb on - strand, within CCNA_01071at 1177.484 kb on - strand, within CCNA_01071at 1177.484 kb on - strand, within CCNA_01071at 1177.484 kb on - strand, within CCNA_01071at 1177.484 kb on - strand, within CCNA_01071at 1177.500 kb on + strand, within CCNA_01071at 1177.522 kb on + strand, within CCNA_01071at 1177.530 kb on - strand, within CCNA_01071at 1177.537 kb on - strand, within CCNA_01071at 1177.544 kb on + strand, within CCNA_01071at 1177.546 kb on + strand, within CCNA_01071at 1177.546 kb on + strand, within CCNA_01071at 1177.554 kb on - strand, within CCNA_01071at 1177.562 kb on - strand, within CCNA_01071at 1177.578 kb on + strand, within CCNA_01071at 1177.578 kb on + strand, within CCNA_01071at 1177.586 kb on - strand, within CCNA_01071at 1177.586 kb on - strand, within CCNA_01071at 1177.597 kb on - strand, within CCNA_01071at 1177.636 kb on - strand, within CCNA_01071at 1177.641 kb on + strand, within CCNA_01071at 1177.641 kb on + strand, within CCNA_01071at 1177.755 kb on + strand, within CCNA_01071at 1177.764 kb on + strand, within CCNA_01071at 1177.765 kb on - strand, within CCNA_01071at 1177.818 kb on + strand, within CCNA_01071at 1177.826 kb on + strand, within CCNA_01071at 1177.826 kb on - strand, within CCNA_01071at 1177.926 kb on - strand, within CCNA_01071at 1177.952 kb on + strand, within CCNA_01071at 1177.957 kb on + strand, within CCNA_01071at 1177.957 kb on + strand, within CCNA_01071at 1177.965 kb on - strand, within CCNA_01071at 1177.965 kb on - strand, within CCNA_01071at 1177.965 kb on - strand, within CCNA_01071at 1177.965 kb on - strand, within CCNA_01071at 1177.985 kb on - strand, within CCNA_01071at 1178.041 kb on - strand, within CCNA_01071at 1178.090 kb on + strand, within CCNA_01071at 1178.090 kb on + strand, within CCNA_01071at 1178.090 kb on + strand, within CCNA_01071at 1178.090 kb on + strand, within CCNA_01071at 1178.090 kb on + strand, within CCNA_01071at 1178.094 kb on - strand, within CCNA_01071at 1178.098 kb on - strand, within CCNA_01071at 1178.098 kb on - strand, within CCNA_01071at 1178.098 kb on - strand, within CCNA_01071at 1178.098 kb on - strand, within CCNA_01071at 1178.098 kb on - strand, within CCNA_01071at 1178.098 kb on - strand, within CCNA_01071at 1178.098 kb on - strand, within CCNA_01071at 1178.107 kb on + strand, within CCNA_01071at 1178.115 kb on - strand, within CCNA_01071at 1178.132 kb on - strand, within CCNA_01071at 1178.155 kb on + strand, within CCNA_01071at 1178.163 kb on - strand, within CCNA_01071

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
remove
1,175,519 - CCNA_01069 0.80 -1.4
1,175,629 + CCNA_01069 0.88 +1.5
1,175,652 + CCNA_01069 0.89 -0.2
1,175,652 + CCNA_01069 0.89 -0.2
1,175,660 - CCNA_01069 0.90 -0.9
1,175,674 + +0.3
1,175,735 - +0.1
1,175,790 + +0.1
1,176,089 + -0.1
1,176,152 + -0.6
1,176,160 - -0.8
1,176,236 + -0.3
1,176,238 - -0.4
1,176,279 + +0.1
1,176,343 - +0.4
1,176,387 - +0.2
1,176,480 + -0.3
1,176,544 + -0.0
1,176,544 + -2.3
1,176,549 + -0.2
1,176,549 + -0.6
1,176,549 + +0.7
1,176,549 + +0.2
1,176,549 + +0.7
1,176,552 - -0.2
1,176,552 - -0.8
1,176,557 - +0.1
1,176,557 - +0.4
1,176,557 - -0.1
1,176,557 - +0.6
1,176,557 - -0.0
1,176,557 - +0.8
1,176,562 - -0.4
1,176,619 + CCNA_01070 0.15 +0.0
1,176,646 - CCNA_01070 0.18 -0.5
1,176,658 + CCNA_01070 0.20 -0.3
1,176,685 - CCNA_01070 0.24 +1.2
1,176,725 + CCNA_01070 0.29 +0.3
1,176,779 - CCNA_01070 0.36 +0.1
1,176,801 - CCNA_01070 0.39 -0.1
1,176,879 - CCNA_01070 0.49 +0.5
1,176,900 - CCNA_01070 0.52 -0.1
1,176,906 + CCNA_01070 0.53 +0.6
1,176,944 + CCNA_01070 0.58 -0.4
1,176,946 - CCNA_01070 0.58 +0.3
1,176,963 + CCNA_01070 0.61 -0.0
1,176,976 + CCNA_01070 0.62 -1.8
1,176,992 + CCNA_01070 0.65 -0.7
1,177,005 - CCNA_01070 0.66 -0.9
1,177,138 + CCNA_01070 0.84 -0.7
1,177,143 - CCNA_01070 0.85 +0.6
1,177,154 + CCNA_01070 0.86 +0.3
1,177,156 + CCNA_01070 0.86 -1.6
1,177,162 - CCNA_01070 0.87 -0.3
1,177,162 - CCNA_01070 0.87 -1.1
1,177,164 - CCNA_01070 0.87 +0.8
1,177,171 + CCNA_01070 0.88 -0.3
1,177,171 + CCNA_01070 0.88 -2.3
1,177,174 - CCNA_01070 0.89 -0.2
1,177,179 - CCNA_01070 0.89 +1.3
1,177,184 + -1.9
1,177,219 + -1.1
1,177,227 - -0.6
1,177,260 - +0.8
1,177,264 + -0.8
1,177,264 + -0.0
1,177,264 + -0.2
1,177,264 + +0.8
1,177,265 + -0.8
1,177,265 + +0.2
1,177,272 - +0.1
1,177,297 + -1.9
1,177,353 + -0.3
1,177,353 + +0.1
1,177,353 + -0.2
1,177,353 + +0.9
1,177,353 + +0.3
1,177,356 - +0.3
1,177,361 - +0.2
1,177,361 - -0.1
1,177,361 - +0.7
1,177,361 - -0.1
1,177,361 - -0.8
1,177,361 - -0.3
1,177,361 - +1.0
1,177,361 - +0.6
1,177,361 - -0.0
1,177,366 - +0.5
1,177,399 - +0.4
1,177,442 - -1.1
1,177,455 - CCNA_01071 0.11 +0.0
1,177,467 - CCNA_01071 0.12 +0.7
1,177,471 + CCNA_01071 0.12 -1.2
1,177,471 + CCNA_01071 0.12 +0.1
1,177,471 + CCNA_01071 0.12 -0.0
1,177,471 + CCNA_01071 0.12 +0.5
1,177,471 + CCNA_01071 0.12 +1.5
1,177,471 + CCNA_01071 0.12 +0.1
1,177,471 + CCNA_01071 0.12 -0.4
1,177,471 + CCNA_01071 0.12 -0.6
1,177,471 + CCNA_01071 0.12 -0.6
1,177,472 - CCNA_01071 0.12 -0.1
1,177,472 - CCNA_01071 0.12 -0.7
1,177,476 + CCNA_01071 0.12 +0.6
1,177,476 + CCNA_01071 0.12 -0.7
1,177,476 + CCNA_01071 0.12 -0.1
1,177,476 + CCNA_01071 0.12 -1.3
1,177,477 - CCNA_01071 0.12 +0.5
1,177,479 - CCNA_01071 0.13 -0.3
1,177,479 - CCNA_01071 0.13 -0.8
1,177,479 - CCNA_01071 0.13 -0.1
1,177,479 - CCNA_01071 0.13 +0.9
1,177,479 - CCNA_01071 0.13 -0.9
1,177,484 - CCNA_01071 0.13 -0.3
1,177,484 - CCNA_01071 0.13 -0.0
1,177,484 - CCNA_01071 0.13 +0.2
1,177,484 - CCNA_01071 0.13 -0.6
1,177,500 + CCNA_01071 0.14 +0.2
1,177,522 + CCNA_01071 0.16 +0.0
1,177,530 - CCNA_01071 0.16 +0.3
1,177,537 - CCNA_01071 0.17 -0.1
1,177,544 + CCNA_01071 0.17 -0.3
1,177,546 + CCNA_01071 0.17 -0.7
1,177,546 + CCNA_01071 0.17 -0.9
1,177,554 - CCNA_01071 0.18 -0.4
1,177,562 - CCNA_01071 0.18 -0.4
1,177,578 + CCNA_01071 0.19 -1.6
1,177,578 + CCNA_01071 0.19 -0.9
1,177,586 - CCNA_01071 0.20 +0.4
1,177,586 - CCNA_01071 0.20 -0.2
1,177,597 - CCNA_01071 0.21 -0.3
1,177,636 - CCNA_01071 0.24 -1.5
1,177,641 + CCNA_01071 0.24 -0.1
1,177,641 + CCNA_01071 0.24 -0.0
1,177,755 + CCNA_01071 0.32 -0.7
1,177,764 + CCNA_01071 0.32 -1.2
1,177,765 - CCNA_01071 0.32 +0.0
1,177,818 + CCNA_01071 0.36 -0.6
1,177,826 + CCNA_01071 0.37 +0.4
1,177,826 - CCNA_01071 0.37 -1.1
1,177,926 - CCNA_01071 0.44 -0.2
1,177,952 + CCNA_01071 0.46 -0.2
1,177,957 + CCNA_01071 0.46 -0.1
1,177,957 + CCNA_01071 0.46 -0.6
1,177,965 - CCNA_01071 0.46 -0.1
1,177,965 - CCNA_01071 0.46 +0.4
1,177,965 - CCNA_01071 0.46 +0.3
1,177,965 - CCNA_01071 0.46 -0.8
1,177,985 - CCNA_01071 0.48 +0.9
1,178,041 - CCNA_01071 0.52 +0.1
1,178,090 + CCNA_01071 0.55 -1.1
1,178,090 + CCNA_01071 0.55 -1.0
1,178,090 + CCNA_01071 0.55 -0.9
1,178,090 + CCNA_01071 0.55 -1.6
1,178,090 + CCNA_01071 0.55 -0.9
1,178,094 - CCNA_01071 0.55 +0.6
1,178,098 - CCNA_01071 0.56 +0.2
1,178,098 - CCNA_01071 0.56 -0.1
1,178,098 - CCNA_01071 0.56 +0.2
1,178,098 - CCNA_01071 0.56 -0.4
1,178,098 - CCNA_01071 0.56 +0.5
1,178,098 - CCNA_01071 0.56 +0.1
1,178,098 - CCNA_01071 0.56 +0.3
1,178,107 + CCNA_01071 0.56 -0.8
1,178,115 - CCNA_01071 0.57 +0.8
1,178,132 - CCNA_01071 0.58 -0.4
1,178,155 + CCNA_01071 0.60 +0.2
1,178,163 - CCNA_01071 0.60 -0.3

Or see this region's nucleotide sequence