Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00869 and CCNA_00870 are separated by 65 nucleotides CCNA_00870 and CCNA_00871 are separated by 19 nucleotides CCNA_00871 and CCNA_00872 overlap by 4 nucleotides CCNA_00872 and CCNA_00873 are separated by 28 nucleotides
CCNA_00869: CCNA_00869 - DNA modification methyltransferase-related protein, at 947,426 to 950,383
_00869
CCNA_00870: CCNA_00870 - hypothetical protein, at 950,449 to 950,886
_00870
CCNA_00871: CCNA_00871 - carbon-nitrogen hydrolase family protein, at 950,906 to 951,757
_00871
CCNA_00872: CCNA_00872 - glutaredoxin, at 951,754 to 952,008
_00872
CCNA_00873: CCNA_00873 - amidophosphoribosyltransferase family protein, at 952,037 to 952,834
_00873
Position (kb) 950
951
952 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 949.930 kb on + strand, within CCNA_00869 at 949.957 kb on - strand, within CCNA_00869 at 949.995 kb on - strand, within CCNA_00869 at 950.050 kb on - strand, within CCNA_00869 at 950.065 kb on + strand, within CCNA_00869 at 950.074 kb on + strand, within CCNA_00869 at 950.082 kb on - strand, within CCNA_00869 at 950.111 kb on + strand at 950.112 kb on - strand at 950.119 kb on - strand at 950.120 kb on - strand at 950.123 kb on + strand at 950.162 kb on - strand at 950.162 kb on - strand at 950.162 kb on - strand at 950.191 kb on - strand at 950.233 kb on + strand at 950.246 kb on - strand at 950.349 kb on - strand at 950.349 kb on - strand at 950.386 kb on - strand at 950.386 kb on - strand at 950.387 kb on - strand at 950.387 kb on - strand at 950.388 kb on - strand at 950.432 kb on + strand at 950.447 kb on + strand at 950.503 kb on - strand, within CCNA_00870 at 950.503 kb on - strand, within CCNA_00870 at 950.507 kb on + strand, within CCNA_00870 at 950.518 kb on + strand, within CCNA_00870 at 950.527 kb on - strand, within CCNA_00870 at 950.603 kb on - strand, within CCNA_00870 at 950.607 kb on - strand, within CCNA_00870 at 950.682 kb on + strand, within CCNA_00870 at 950.726 kb on - strand, within CCNA_00870 at 950.742 kb on - strand, within CCNA_00870 at 950.764 kb on + strand, within CCNA_00870 at 950.783 kb on + strand, within CCNA_00870 at 950.793 kb on + strand, within CCNA_00870 at 950.798 kb on + strand, within CCNA_00870 at 950.801 kb on - strand, within CCNA_00870 at 950.887 kb on + strand at 950.895 kb on - strand at 950.905 kb on + strand at 950.913 kb on - strand at 950.941 kb on - strand at 950.978 kb on + strand at 950.986 kb on - strand at 951.029 kb on + strand, within CCNA_00871 at 951.052 kb on + strand, within CCNA_00871 at 951.070 kb on - strand, within CCNA_00871 at 951.085 kb on + strand, within CCNA_00871 at 951.098 kb on - strand, within CCNA_00871 at 951.112 kb on + strand, within CCNA_00871 at 951.120 kb on - strand, within CCNA_00871 at 951.125 kb on + strand, within CCNA_00871 at 951.200 kb on + strand, within CCNA_00871 at 951.208 kb on - strand, within CCNA_00871 at 951.208 kb on - strand, within CCNA_00871 at 951.218 kb on + strand, within CCNA_00871 at 951.226 kb on - strand, within CCNA_00871 at 951.269 kb on + strand, within CCNA_00871 at 951.274 kb on + strand, within CCNA_00871 at 951.280 kb on + strand, within CCNA_00871 at 951.292 kb on - strand, within CCNA_00871 at 951.338 kb on - strand, within CCNA_00871 at 951.369 kb on + strand, within CCNA_00871 at 951.369 kb on + strand, within CCNA_00871 at 951.482 kb on + strand, within CCNA_00871 at 951.482 kb on + strand, within CCNA_00871 at 951.482 kb on + strand, within CCNA_00871 at 951.482 kb on + strand, within CCNA_00871 at 951.490 kb on - strand, within CCNA_00871 at 951.547 kb on - strand, within CCNA_00871 at 951.567 kb on + strand, within CCNA_00871 at 951.567 kb on - strand, within CCNA_00871 at 951.575 kb on - strand, within CCNA_00871 at 951.575 kb on - strand, within CCNA_00871 at 951.596 kb on - strand, within CCNA_00871 at 951.617 kb on - strand, within CCNA_00871 at 951.637 kb on + strand, within CCNA_00871 at 951.645 kb on - strand, within CCNA_00871 at 951.683 kb on + strand at 951.686 kb on - strand at 951.691 kb on - strand at 951.691 kb on - strand at 951.691 kb on - strand at 951.691 kb on - strand at 951.696 kb on - strand at 951.696 kb on - strand at 951.716 kb on + strand at 951.716 kb on + strand at 951.742 kb on + strand at 951.742 kb on + strand at 951.750 kb on - strand at 951.762 kb on + strand at 951.770 kb on - strand at 951.815 kb on - strand, within CCNA_00872 at 951.823 kb on - strand, within CCNA_00872 at 951.841 kb on + strand, within CCNA_00872 at 951.841 kb on + strand, within CCNA_00872 at 951.849 kb on - strand, within CCNA_00872 at 951.871 kb on - strand, within CCNA_00872 at 951.900 kb on - strand, within CCNA_00872 at 951.905 kb on - strand, within CCNA_00872 at 951.986 kb on + strand at 951.992 kb on + strand at 951.993 kb on - strand at 951.998 kb on + strand at 952.000 kb on - strand at 952.000 kb on - strand at 952.005 kb on - strand at 952.034 kb on + strand at 952.044 kb on - strand at 952.044 kb on - strand at 952.046 kb on - strand at 952.067 kb on - strand at 952.067 kb on - strand at 952.084 kb on + strand at 952.087 kb on - strand at 952.127 kb on + strand, within CCNA_00873 at 952.148 kb on + strand, within CCNA_00873 at 952.148 kb on + strand, within CCNA_00873 at 952.148 kb on + strand, within CCNA_00873 at 952.166 kb on - strand, within CCNA_00873 at 952.205 kb on + strand, within CCNA_00873 at 952.222 kb on - strand, within CCNA_00873 at 952.248 kb on + strand, within CCNA_00873 at 952.288 kb on + strand, within CCNA_00873 at 952.297 kb on - strand, within CCNA_00873 at 952.376 kb on + strand, within CCNA_00873 at 952.378 kb on + strand, within CCNA_00873 at 952.378 kb on + strand, within CCNA_00873 at 952.384 kb on + strand, within CCNA_00873 at 952.399 kb on - strand, within CCNA_00873 at 952.424 kb on - strand, within CCNA_00873 at 952.429 kb on - strand, within CCNA_00873 at 952.463 kb on - strand, within CCNA_00873 at 952.504 kb on + strand, within CCNA_00873 at 952.504 kb on + strand, within CCNA_00873 at 952.504 kb on + strand, within CCNA_00873 at 952.512 kb on - strand, within CCNA_00873 at 952.512 kb on - strand, within CCNA_00873 at 952.512 kb on - strand, within CCNA_00873 at 952.550 kb on - strand, within CCNA_00873 at 952.555 kb on - strand, within CCNA_00873 at 952.555 kb on - strand, within CCNA_00873 at 952.559 kb on + strand, within CCNA_00873 at 952.560 kb on + strand, within CCNA_00873 at 952.560 kb on + strand, within CCNA_00873 at 952.560 kb on + strand, within CCNA_00873 at 952.560 kb on + strand, within CCNA_00873 at 952.560 kb on + strand, within CCNA_00873 at 952.560 kb on + strand, within CCNA_00873 at 952.567 kb on - strand, within CCNA_00873 at 952.568 kb on - strand, within CCNA_00873 at 952.568 kb on - strand, within CCNA_00873 at 952.568 kb on - strand, within CCNA_00873 at 952.568 kb on - strand, within CCNA_00873 at 952.568 kb on - strand, within CCNA_00873 at 952.568 kb on - strand, within CCNA_00873 at 952.568 kb on - strand, within CCNA_00873 at 952.572 kb on + strand, within CCNA_00873 at 952.579 kb on + strand, within CCNA_00873 at 952.579 kb on - strand, within CCNA_00873 at 952.584 kb on + strand, within CCNA_00873 at 952.608 kb on + strand, within CCNA_00873 at 952.608 kb on + strand, within CCNA_00873 at 952.619 kb on + strand, within CCNA_00873 at 952.621 kb on - strand, within CCNA_00873 at 952.621 kb on - strand, within CCNA_00873 at 952.671 kb on - strand, within CCNA_00873 at 952.694 kb on + strand, within CCNA_00873 at 952.699 kb on + strand, within CCNA_00873 at 952.699 kb on + strand, within CCNA_00873 at 952.702 kb on - strand, within CCNA_00873 at 952.707 kb on - strand, within CCNA_00873
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 949,930 + CCNA_00869 0.85 -0.4 949,957 - CCNA_00869 0.86 +0.7 949,995 - CCNA_00869 0.87 -0.3 950,050 - CCNA_00869 0.89 +0.2 950,065 + CCNA_00869 0.89 +1.1 950,074 + CCNA_00869 0.90 -0.7 950,082 - CCNA_00869 0.90 -0.2 950,111 + -0.1 950,112 - -0.2 950,119 - -0.7 950,120 - +0.5 950,123 + -0.5 950,162 - -0.0 950,162 - +0.5 950,162 - -1.0 950,191 - +0.9 950,233 + +0.0 950,246 - +0.6 950,349 - +0.5 950,349 - +0.7 950,386 - -0.2 950,386 - -0.9 950,387 - +0.2 950,387 - -1.1 950,388 - +0.5 950,432 + -0.2 950,447 + +0.6 950,503 - CCNA_00870 0.12 -0.1 950,503 - CCNA_00870 0.12 +0.3 950,507 + CCNA_00870 0.13 -0.2 950,518 + CCNA_00870 0.16 -0.5 950,527 - CCNA_00870 0.18 +0.7 950,603 - CCNA_00870 0.35 +0.2 950,607 - CCNA_00870 0.36 +0.2 950,682 + CCNA_00870 0.53 -1.4 950,726 - CCNA_00870 0.63 +0.0 950,742 - CCNA_00870 0.67 -0.7 950,764 + CCNA_00870 0.72 -0.6 950,783 + CCNA_00870 0.76 +0.7 950,793 + CCNA_00870 0.79 +0.2 950,798 + CCNA_00870 0.80 +0.8 950,801 - CCNA_00870 0.80 -1.6 950,887 + +1.5 950,895 - -0.2 950,905 + +1.0 950,913 - +0.2 950,941 - -0.2 950,978 + -0.3 950,986 - +1.6 951,029 + CCNA_00871 0.14 -0.4 951,052 + CCNA_00871 0.17 +0.4 951,070 - CCNA_00871 0.19 -0.3 951,085 + CCNA_00871 0.21 +0.7 951,098 - CCNA_00871 0.23 -1.2 951,112 + CCNA_00871 0.24 +1.0 951,120 - CCNA_00871 0.25 -0.0 951,125 + CCNA_00871 0.26 -0.7 951,200 + CCNA_00871 0.35 -0.8 951,208 - CCNA_00871 0.35 +0.5 951,208 - CCNA_00871 0.35 +0.4 951,218 + CCNA_00871 0.37 -0.5 951,226 - CCNA_00871 0.38 +0.1 951,269 + CCNA_00871 0.43 -1.1 951,274 + CCNA_00871 0.43 +1.7 951,280 + CCNA_00871 0.44 +1.1 951,292 - CCNA_00871 0.45 +0.4 951,338 - CCNA_00871 0.51 +0.7 951,369 + CCNA_00871 0.54 +0.6 951,369 + CCNA_00871 0.54 +1.0 951,482 + CCNA_00871 0.68 -0.3 951,482 + CCNA_00871 0.68 -0.1 951,482 + CCNA_00871 0.68 +0.8 951,482 + CCNA_00871 0.68 +0.6 951,490 - CCNA_00871 0.69 +0.2 951,547 - CCNA_00871 0.75 +0.4 951,567 + CCNA_00871 0.78 -0.5 951,567 - CCNA_00871 0.78 +0.1 951,575 - CCNA_00871 0.79 +0.3 951,575 - CCNA_00871 0.79 +1.1 951,596 - CCNA_00871 0.81 +0.4 951,617 - CCNA_00871 0.83 -0.2 951,637 + CCNA_00871 0.86 -0.6 951,645 - CCNA_00871 0.87 +0.4 951,683 + -1.2 951,686 - +0.2 951,691 - +0.3 951,691 - +0.5 951,691 - +0.3 951,691 - -0.4 951,696 - +0.5 951,696 - +0.4 951,716 + -1.1 951,716 + -0.5 951,742 + -0.4 951,742 + -0.5 951,750 - +0.7 951,762 + +0.7 951,770 - +0.3 951,815 - CCNA_00872 0.24 +0.4 951,823 - CCNA_00872 0.27 -0.4 951,841 + CCNA_00872 0.34 -0.4 951,841 + CCNA_00872 0.34 -1.0 951,849 - CCNA_00872 0.37 +0.2 951,871 - CCNA_00872 0.46 -0.1 951,900 - CCNA_00872 0.57 -0.7 951,905 - CCNA_00872 0.59 -0.2 951,986 + +2.9 951,992 + +0.1 951,993 - -1.0 951,998 + +0.9 952,000 - +0.0 952,000 - -0.2 952,005 - -0.2 952,034 + -1.2 952,044 - +0.1 952,044 - -1.0 952,046 - -0.1 952,067 - +0.3 952,067 - -0.3 952,084 + -0.6 952,087 - -0.6 952,127 + CCNA_00873 0.11 -0.5 952,148 + CCNA_00873 0.14 +0.7 952,148 + CCNA_00873 0.14 -0.8 952,148 + CCNA_00873 0.14 -0.6 952,166 - CCNA_00873 0.16 -1.2 952,205 + CCNA_00873 0.21 -1.5 952,222 - CCNA_00873 0.23 -0.5 952,248 + CCNA_00873 0.26 -0.4 952,288 + CCNA_00873 0.31 -1.3 952,297 - CCNA_00873 0.33 -1.1 952,376 + CCNA_00873 0.42 -0.6 952,378 + CCNA_00873 0.43 -0.9 952,378 + CCNA_00873 0.43 -0.2 952,384 + CCNA_00873 0.43 +0.3 952,399 - CCNA_00873 0.45 -0.6 952,424 - CCNA_00873 0.48 +1.4 952,429 - CCNA_00873 0.49 -0.1 952,463 - CCNA_00873 0.53 -0.0 952,504 + CCNA_00873 0.59 -1.1 952,504 + CCNA_00873 0.59 +0.3 952,504 + CCNA_00873 0.59 -0.7 952,512 - CCNA_00873 0.60 -0.0 952,512 - CCNA_00873 0.60 +0.5 952,512 - CCNA_00873 0.60 +0.0 952,550 - CCNA_00873 0.64 +0.1 952,555 - CCNA_00873 0.65 -0.1 952,555 - CCNA_00873 0.65 +0.4 952,559 + CCNA_00873 0.65 +0.3 952,560 + CCNA_00873 0.66 -1.1 952,560 + CCNA_00873 0.66 -0.6 952,560 + CCNA_00873 0.66 +0.2 952,560 + CCNA_00873 0.66 -0.4 952,560 + CCNA_00873 0.66 +2.3 952,560 + CCNA_00873 0.66 -0.6 952,567 - CCNA_00873 0.66 -1.4 952,568 - CCNA_00873 0.67 +0.0 952,568 - CCNA_00873 0.67 -1.7 952,568 - CCNA_00873 0.67 +0.7 952,568 - CCNA_00873 0.67 -1.6 952,568 - CCNA_00873 0.67 -0.1 952,568 - CCNA_00873 0.67 -0.4 952,568 - CCNA_00873 0.67 +0.2 952,572 + CCNA_00873 0.67 -0.7 952,579 + CCNA_00873 0.68 +0.6 952,579 - CCNA_00873 0.68 +0.1 952,584 + CCNA_00873 0.69 -0.0 952,608 + CCNA_00873 0.72 -2.3 952,608 + CCNA_00873 0.72 -0.7 952,619 + CCNA_00873 0.73 +0.1 952,621 - CCNA_00873 0.73 -0.5 952,621 - CCNA_00873 0.73 -0.6 952,671 - CCNA_00873 0.79 -1.3 952,694 + CCNA_00873 0.82 -2.3 952,699 + CCNA_00873 0.83 +0.8 952,699 + CCNA_00873 0.83 -0.9 952,702 - CCNA_00873 0.83 -0.1 952,707 - CCNA_00873 0.84 -0.0
Or see this region's nucleotide sequence