Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00796

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00794 and CCNA_00795 are separated by 10 nucleotidesCCNA_00795 and CCNA_00796 overlap by 8 nucleotidesCCNA_00796 and CCNA_03940 are separated by 109 nucleotidesCCNA_03940 and CCNA_00798 are separated by 8 nucleotides CCNA_00794: CCNA_00794 - conserved membrane spanning protein, at 857,776 to 858,969 _00794 CCNA_00795: CCNA_00795 - two-component response regulator FixJ, at 858,980 to 859,588 _00795 CCNA_00796: CCNA_00796 - oxygen sensory histidine kinase FixL, at 859,581 to 861,068 _00796 CCNA_03940: CCNA_03940 - hypothetical protein, at 861,178 to 861,285 _03940 CCNA_00798: CCNA_00798 - ABC transporter, ATP-binding protein cydC, at 861,294 to 862,892 _00798 Position (kb) 859 860 861 862Strain fitness (log2 ratio) -2 -1 0 1at 858.598 kb on - strand, within CCNA_00794at 858.625 kb on + strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.730 kb on + strand, within CCNA_00794at 858.730 kb on + strand, within CCNA_00794at 858.738 kb on - strand, within CCNA_00794at 858.769 kb on - strand, within CCNA_00794at 858.791 kb on + strand, within CCNA_00794at 858.791 kb on + strand, within CCNA_00794at 858.799 kb on - strand, within CCNA_00794at 858.806 kb on - strand, within CCNA_00794at 858.856 kb on - strandat 858.918 kb on + strandat 858.938 kb on - strandat 859.000 kb on + strandat 859.010 kb on + strandat 859.017 kb on + strandat 859.032 kb on + strandat 859.064 kb on + strand, within CCNA_00795at 859.064 kb on + strand, within CCNA_00795at 859.083 kb on - strand, within CCNA_00795at 859.093 kb on + strand, within CCNA_00795at 859.133 kb on - strand, within CCNA_00795at 859.163 kb on - strand, within CCNA_00795at 859.261 kb on + strand, within CCNA_00795at 859.343 kb on + strand, within CCNA_00795at 859.389 kb on + strand, within CCNA_00795at 859.402 kb on - strand, within CCNA_00795at 859.406 kb on + strand, within CCNA_00795at 859.414 kb on - strand, within CCNA_00795at 859.443 kb on + strand, within CCNA_00795at 859.443 kb on + strand, within CCNA_00795at 859.451 kb on - strand, within CCNA_00795at 859.453 kb on + strand, within CCNA_00795at 859.463 kb on + strand, within CCNA_00795at 859.471 kb on - strand, within CCNA_00795at 859.492 kb on - strand, within CCNA_00795at 859.498 kb on + strand, within CCNA_00795at 859.514 kb on + strand, within CCNA_00795at 859.543 kb on - strandat 859.570 kb on + strandat 859.576 kb on - strandat 859.585 kb on - strandat 859.625 kb on + strandat 859.636 kb on + strandat 859.644 kb on - strandat 859.667 kb on + strandat 859.668 kb on - strandat 859.672 kb on + strandat 859.672 kb on + strandat 859.680 kb on - strandat 859.680 kb on - strandat 859.680 kb on - strandat 859.680 kb on - strandat 859.727 kb on + strandat 859.727 kb on + strandat 859.729 kb on + strandat 859.735 kb on - strand, within CCNA_00796at 859.737 kb on - strand, within CCNA_00796at 859.737 kb on - strand, within CCNA_00796at 859.781 kb on - strand, within CCNA_00796at 859.828 kb on - strand, within CCNA_00796at 859.854 kb on + strand, within CCNA_00796at 859.854 kb on + strand, within CCNA_00796at 859.862 kb on - strand, within CCNA_00796at 859.862 kb on - strand, within CCNA_00796at 859.862 kb on - strand, within CCNA_00796at 859.877 kb on + strand, within CCNA_00796at 859.885 kb on - strand, within CCNA_00796at 859.885 kb on - strand, within CCNA_00796at 859.889 kb on + strand, within CCNA_00796at 859.935 kb on + strand, within CCNA_00796at 859.986 kb on - strand, within CCNA_00796at 860.030 kb on - strand, within CCNA_00796at 860.056 kb on - strand, within CCNA_00796at 860.056 kb on - strand, within CCNA_00796at 860.058 kb on + strand, within CCNA_00796at 860.058 kb on + strand, within CCNA_00796at 860.058 kb on + strand, within CCNA_00796at 860.066 kb on - strand, within CCNA_00796at 860.133 kb on + strand, within CCNA_00796at 860.141 kb on - strand, within CCNA_00796at 860.141 kb on - strand, within CCNA_00796at 860.150 kb on + strand, within CCNA_00796at 860.185 kb on - strand, within CCNA_00796at 860.202 kb on - strand, within CCNA_00796at 860.217 kb on + strand, within CCNA_00796at 860.225 kb on + strand, within CCNA_00796at 860.225 kb on - strand, within CCNA_00796at 860.225 kb on - strand, within CCNA_00796at 860.249 kb on + strand, within CCNA_00796at 860.257 kb on - strand, within CCNA_00796at 860.268 kb on + strand, within CCNA_00796at 860.268 kb on + strand, within CCNA_00796at 860.313 kb on - strand, within CCNA_00796at 860.313 kb on - strand, within CCNA_00796at 860.347 kb on + strand, within CCNA_00796at 860.347 kb on + strand, within CCNA_00796at 860.461 kb on + strand, within CCNA_00796at 860.490 kb on + strand, within CCNA_00796at 860.498 kb on - strand, within CCNA_00796at 860.498 kb on - strand, within CCNA_00796at 860.559 kb on - strand, within CCNA_00796at 860.590 kb on - strand, within CCNA_00796at 860.615 kb on + strand, within CCNA_00796at 860.629 kb on - strand, within CCNA_00796at 860.677 kb on - strand, within CCNA_00796at 860.679 kb on + strand, within CCNA_00796at 860.687 kb on - strand, within CCNA_00796at 860.687 kb on - strand, within CCNA_00796at 860.697 kb on - strand, within CCNA_00796at 860.731 kb on + strand, within CCNA_00796at 860.731 kb on + strand, within CCNA_00796at 860.731 kb on + strand, within CCNA_00796at 860.739 kb on - strand, within CCNA_00796at 860.742 kb on + strand, within CCNA_00796at 860.845 kb on + strand, within CCNA_00796at 860.850 kb on + strand, within CCNA_00796at 860.850 kb on + strand, within CCNA_00796at 860.856 kb on + strand, within CCNA_00796at 860.858 kb on - strand, within CCNA_00796at 860.886 kb on + strand, within CCNA_00796at 860.891 kb on + strand, within CCNA_00796at 860.894 kb on - strand, within CCNA_00796at 860.894 kb on - strand, within CCNA_00796at 860.894 kb on - strand, within CCNA_00796at 860.894 kb on - strand, within CCNA_00796at 860.894 kb on - strand, within CCNA_00796at 860.901 kb on + strand, within CCNA_00796at 860.901 kb on + strand, within CCNA_00796at 860.901 kb on + strand, within CCNA_00796at 860.901 kb on + strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 861.019 kb on + strandat 861.028 kb on + strandat 861.038 kb on + strandat 861.082 kb on - strandat 861.099 kb on + strandat 861.106 kb on - strandat 861.107 kb on - strandat 861.124 kb on + strandat 861.124 kb on + strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.174 kb on - strandat 861.252 kb on + strand, within CCNA_03940at 861.252 kb on + strand, within CCNA_03940at 861.259 kb on + strand, within CCNA_03940at 861.260 kb on - strand, within CCNA_03940at 861.300 kb on - strandat 861.424 kb on - strandat 861.462 kb on - strand, within CCNA_00798at 861.472 kb on + strand, within CCNA_00798at 861.482 kb on - strand, within CCNA_00798at 861.529 kb on + strand, within CCNA_00798at 861.539 kb on + strand, within CCNA_00798at 861.539 kb on + strand, within CCNA_00798at 861.542 kb on - strand, within CCNA_00798at 861.594 kb on + strand, within CCNA_00798at 861.594 kb on + strand, within CCNA_00798at 861.602 kb on - strand, within CCNA_00798at 861.614 kb on - strand, within CCNA_00798at 861.655 kb on + strand, within CCNA_00798at 861.655 kb on + strand, within CCNA_00798at 861.655 kb on + strand, within CCNA_00798at 861.663 kb on - strand, within CCNA_00798at 861.663 kb on - strand, within CCNA_00798at 861.663 kb on - strand, within CCNA_00798at 861.663 kb on - strand, within CCNA_00798at 861.706 kb on - strand, within CCNA_00798at 861.720 kb on - strand, within CCNA_00798at 861.764 kb on + strand, within CCNA_00798at 861.772 kb on - strand, within CCNA_00798at 861.788 kb on + strand, within CCNA_00798at 861.797 kb on - strand, within CCNA_00798at 861.832 kb on + strand, within CCNA_00798at 861.840 kb on - strand, within CCNA_00798at 861.842 kb on + strand, within CCNA_00798at 861.866 kb on + strand, within CCNA_00798at 861.874 kb on - strand, within CCNA_00798at 861.874 kb on - strand, within CCNA_00798at 861.896 kb on - strand, within CCNA_00798at 861.912 kb on - strand, within CCNA_00798at 861.927 kb on - strand, within CCNA_00798at 861.945 kb on + strand, within CCNA_00798at 861.951 kb on - strand, within CCNA_00798at 861.973 kb on + strand, within CCNA_00798at 861.981 kb on - strand, within CCNA_00798at 861.981 kb on - strand, within CCNA_00798at 861.981 kb on - strand, within CCNA_00798at 861.983 kb on + strand, within CCNA_00798at 862.013 kb on - strand, within CCNA_00798at 862.013 kb on - strand, within CCNA_00798at 862.013 kb on - strand, within CCNA_00798at 862.049 kb on - strand, within CCNA_00798at 862.058 kb on - strand, within CCNA_00798at 862.063 kb on - strand, within CCNA_00798at 862.065 kb on + strand, within CCNA_00798

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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858,598 - CCNA_00794 0.69 +0.6
858,625 + CCNA_00794 0.71 -0.4
858,633 - CCNA_00794 0.72 +0.2
858,633 - CCNA_00794 0.72 +0.6
858,730 + CCNA_00794 0.80 -0.8
858,730 + CCNA_00794 0.80 -0.6
858,738 - CCNA_00794 0.81 -1.2
858,769 - CCNA_00794 0.83 -0.5
858,791 + CCNA_00794 0.85 -0.6
858,791 + CCNA_00794 0.85 -0.1
858,799 - CCNA_00794 0.86 +1.2
858,806 - CCNA_00794 0.86 +0.0
858,856 - -0.5
858,918 + -1.9
858,938 - -0.3
859,000 + -1.2
859,010 + +1.2
859,017 + +1.1
859,032 + +0.1
859,064 + CCNA_00795 0.14 -1.2
859,064 + CCNA_00795 0.14 +0.1
859,083 - CCNA_00795 0.17 +0.2
859,093 + CCNA_00795 0.19 -0.6
859,133 - CCNA_00795 0.25 +0.8
859,163 - CCNA_00795 0.30 +0.1
859,261 + CCNA_00795 0.46 +0.1
859,343 + CCNA_00795 0.60 +0.1
859,389 + CCNA_00795 0.67 -0.5
859,402 - CCNA_00795 0.69 +0.3
859,406 + CCNA_00795 0.70 -0.6
859,414 - CCNA_00795 0.71 -0.0
859,443 + CCNA_00795 0.76 +0.1
859,443 + CCNA_00795 0.76 +0.2
859,451 - CCNA_00795 0.77 +0.8
859,453 + CCNA_00795 0.78 -1.0
859,463 + CCNA_00795 0.79 -0.1
859,471 - CCNA_00795 0.81 +0.7
859,492 - CCNA_00795 0.84 +0.1
859,498 + CCNA_00795 0.85 -0.3
859,514 + CCNA_00795 0.88 +0.5
859,543 - +0.4
859,570 + -0.7
859,576 - +0.6
859,585 - -0.1
859,625 + -0.4
859,636 + +0.6
859,644 - +1.1
859,667 + +1.3
859,668 - +0.2
859,672 + -0.8
859,672 + +0.9
859,680 - -0.3
859,680 - +0.2
859,680 - +0.1
859,680 - +0.3
859,727 + +0.2
859,727 + -1.9
859,729 + +0.3
859,735 - CCNA_00796 0.10 +0.2
859,737 - CCNA_00796 0.10 +0.3
859,737 - CCNA_00796 0.10 -0.7
859,781 - CCNA_00796 0.13 +0.6
859,828 - CCNA_00796 0.17 +0.2
859,854 + CCNA_00796 0.18 +0.4
859,854 + CCNA_00796 0.18 +0.2
859,862 - CCNA_00796 0.19 +0.1
859,862 - CCNA_00796 0.19 -0.0
859,862 - CCNA_00796 0.19 +0.4
859,877 + CCNA_00796 0.20 -0.5
859,885 - CCNA_00796 0.20 +0.6
859,885 - CCNA_00796 0.20 -0.3
859,889 + CCNA_00796 0.21 +0.2
859,935 + CCNA_00796 0.24 +1.1
859,986 - CCNA_00796 0.27 +0.6
860,030 - CCNA_00796 0.30 +0.1
860,056 - CCNA_00796 0.32 -0.1
860,056 - CCNA_00796 0.32 -0.4
860,058 + CCNA_00796 0.32 +0.2
860,058 + CCNA_00796 0.32 +0.2
860,058 + CCNA_00796 0.32 -0.4
860,066 - CCNA_00796 0.33 +1.3
860,133 + CCNA_00796 0.37 +0.5
860,141 - CCNA_00796 0.38 +0.6
860,141 - CCNA_00796 0.38 -0.2
860,150 + CCNA_00796 0.38 +0.7
860,185 - CCNA_00796 0.41 +0.9
860,202 - CCNA_00796 0.42 -0.1
860,217 + CCNA_00796 0.43 +0.3
860,225 + CCNA_00796 0.43 +0.3
860,225 - CCNA_00796 0.43 +0.3
860,225 - CCNA_00796 0.43 +0.2
860,249 + CCNA_00796 0.45 +0.3
860,257 - CCNA_00796 0.45 -1.4
860,268 + CCNA_00796 0.46 -0.2
860,268 + CCNA_00796 0.46 +0.9
860,313 - CCNA_00796 0.49 +0.4
860,313 - CCNA_00796 0.49 -0.3
860,347 + CCNA_00796 0.51 +0.0
860,347 + CCNA_00796 0.51 +0.4
860,461 + CCNA_00796 0.59 -0.1
860,490 + CCNA_00796 0.61 +0.2
860,498 - CCNA_00796 0.62 +0.3
860,498 - CCNA_00796 0.62 +0.4
860,559 - CCNA_00796 0.66 +0.6
860,590 - CCNA_00796 0.68 -0.9
860,615 + CCNA_00796 0.69 +0.8
860,629 - CCNA_00796 0.70 -0.5
860,677 - CCNA_00796 0.74 -0.2
860,679 + CCNA_00796 0.74 -0.3
860,687 - CCNA_00796 0.74 -0.7
860,687 - CCNA_00796 0.74 -0.0
860,697 - CCNA_00796 0.75 -0.5
860,731 + CCNA_00796 0.77 -0.2
860,731 + CCNA_00796 0.77 -0.6
860,731 + CCNA_00796 0.77 +0.7
860,739 - CCNA_00796 0.78 -0.2
860,742 + CCNA_00796 0.78 -0.6
860,845 + CCNA_00796 0.85 -0.5
860,850 + CCNA_00796 0.85 +0.9
860,850 + CCNA_00796 0.85 +0.5
860,856 + CCNA_00796 0.86 +0.1
860,858 - CCNA_00796 0.86 -0.4
860,886 + CCNA_00796 0.88 -1.4
860,891 + CCNA_00796 0.88 -0.3
860,894 - CCNA_00796 0.88 -0.9
860,894 - CCNA_00796 0.88 -0.1
860,894 - CCNA_00796 0.88 +0.3
860,894 - CCNA_00796 0.88 +0.7
860,894 - CCNA_00796 0.88 +0.3
860,901 + CCNA_00796 0.89 +0.5
860,901 + CCNA_00796 0.89 +1.0
860,901 + CCNA_00796 0.89 +0.6
860,901 + CCNA_00796 0.89 +1.1
860,909 - CCNA_00796 0.89 -0.4
860,909 - CCNA_00796 0.89 +0.1
860,909 - CCNA_00796 0.89 -0.4
860,909 - CCNA_00796 0.89 -0.1
860,909 - CCNA_00796 0.89 +0.6
861,019 + -1.3
861,028 + -1.0
861,038 + +0.1
861,082 - -0.2
861,099 + +0.1
861,106 - -0.2
861,107 - +0.7
861,124 + +0.2
861,124 + -0.6
861,132 - +0.4
861,132 - -0.3
861,132 - +0.9
861,132 - +0.1
861,174 - +1.4
861,252 + CCNA_03940 0.69 -0.3
861,252 + CCNA_03940 0.69 -0.3
861,259 + CCNA_03940 0.75 +0.3
861,260 - CCNA_03940 0.76 -0.4
861,300 - -1.1
861,424 - -0.3
861,462 - CCNA_00798 0.11 +0.4
861,472 + CCNA_00798 0.11 -0.3
861,482 - CCNA_00798 0.12 -0.2
861,529 + CCNA_00798 0.15 -1.1
861,539 + CCNA_00798 0.15 -0.1
861,539 + CCNA_00798 0.15 -0.5
861,542 - CCNA_00798 0.16 -0.2
861,594 + CCNA_00798 0.19 -0.4
861,594 + CCNA_00798 0.19 -0.0
861,602 - CCNA_00798 0.19 -0.2
861,614 - CCNA_00798 0.20 -0.1
861,655 + CCNA_00798 0.23 -0.6
861,655 + CCNA_00798 0.23 +0.5
861,655 + CCNA_00798 0.23 +0.5
861,663 - CCNA_00798 0.23 -0.7
861,663 - CCNA_00798 0.23 +0.3
861,663 - CCNA_00798 0.23 -0.5
861,663 - CCNA_00798 0.23 +1.3
861,706 - CCNA_00798 0.26 -0.2
861,720 - CCNA_00798 0.27 -0.1
861,764 + CCNA_00798 0.29 -0.1
861,772 - CCNA_00798 0.30 +0.6
861,788 + CCNA_00798 0.31 +0.9
861,797 - CCNA_00798 0.31 +0.5
861,832 + CCNA_00798 0.34 +0.3
861,840 - CCNA_00798 0.34 +0.7
861,842 + CCNA_00798 0.34 +0.0
861,866 + CCNA_00798 0.36 +0.1
861,874 - CCNA_00798 0.36 -0.2
861,874 - CCNA_00798 0.36 -1.6
861,896 - CCNA_00798 0.38 -0.1
861,912 - CCNA_00798 0.39 +0.1
861,927 - CCNA_00798 0.40 -0.4
861,945 + CCNA_00798 0.41 -0.0
861,951 - CCNA_00798 0.41 -0.5
861,973 + CCNA_00798 0.42 +0.7
861,981 - CCNA_00798 0.43 +0.1
861,981 - CCNA_00798 0.43 +0.3
861,981 - CCNA_00798 0.43 -0.2
861,983 + CCNA_00798 0.43 -0.9
862,013 - CCNA_00798 0.45 -0.1
862,013 - CCNA_00798 0.45 +0.1
862,013 - CCNA_00798 0.45 +1.2
862,049 - CCNA_00798 0.47 +0.4
862,058 - CCNA_00798 0.48 +0.4
862,063 - CCNA_00798 0.48 -0.2
862,065 + CCNA_00798 0.48 -0.1

Or see this region's nucleotide sequence