Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00747 and CCNA_00748 are separated by 210 nucleotides CCNA_00748 and CCNA_00749 are separated by 4 nucleotides CCNA_00749 and CCNA_00750 are separated by 208 nucleotides
CCNA_00747: CCNA_00747 - cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF, at 803,595 to 804,953
_00747
CCNA_00748: CCNA_00748 - ferrous iron transport protein A, at 805,164 to 805,484
_00748
CCNA_00749: CCNA_00749 - ferrous iron transport protein B, at 805,489 to 807,384
_00749
CCNA_00750: CCNA_00750 - FeaR-family transcriptional regulator, at 807,593 to 808,621
_00750
Position (kb) 805
806
807
808 Strain fitness (log2 ratio) -1
0
1 at 804.544 kb on + strand, within CCNA_00747 at 804.544 kb on + strand, within CCNA_00747 at 804.557 kb on - strand, within CCNA_00747 at 804.565 kb on - strand, within CCNA_00747 at 804.691 kb on - strand, within CCNA_00747 at 804.729 kb on + strand, within CCNA_00747 at 804.742 kb on - strand, within CCNA_00747 at 804.747 kb on + strand, within CCNA_00747 at 804.840 kb on - strand at 804.840 kb on - strand at 804.890 kb on + strand at 804.900 kb on + strand at 804.909 kb on - strand at 804.909 kb on - strand at 804.932 kb on + strand at 804.932 kb on - strand at 804.932 kb on - strand at 804.971 kb on + strand at 804.976 kb on + strand at 804.976 kb on + strand at 804.976 kb on + strand at 804.976 kb on + strand at 804.979 kb on - strand at 804.979 kb on - strand at 804.981 kb on + strand at 804.981 kb on + strand at 804.989 kb on - strand at 804.989 kb on - strand at 805.043 kb on - strand at 805.049 kb on + strand at 805.098 kb on + strand at 805.164 kb on - strand at 805.166 kb on - strand at 805.479 kb on + strand at 805.479 kb on + strand at 805.487 kb on - strand at 806.016 kb on + strand, within CCNA_00749 at 806.078 kb on - strand, within CCNA_00749 at 807.374 kb on + strand at 807.383 kb on + strand at 807.404 kb on - strand at 807.427 kb on - strand at 807.483 kb on - strand at 807.494 kb on + strand at 807.505 kb on + strand at 807.505 kb on + strand at 807.515 kb on + strand at 807.540 kb on - strand at 807.571 kb on - strand at 807.604 kb on - strand at 807.632 kb on - strand at 807.635 kb on + strand at 807.635 kb on + strand at 807.643 kb on - strand at 807.643 kb on - strand at 807.643 kb on - strand at 807.643 kb on - strand at 807.643 kb on - strand at 807.733 kb on - strand, within CCNA_00750 at 807.744 kb on + strand, within CCNA_00750 at 807.777 kb on + strand, within CCNA_00750 at 807.824 kb on - strand, within CCNA_00750 at 807.905 kb on - strand, within CCNA_00750 at 807.978 kb on + strand, within CCNA_00750 at 807.997 kb on + strand, within CCNA_00750 at 808.049 kb on - strand, within CCNA_00750 at 808.049 kb on - strand, within CCNA_00750 at 808.086 kb on + strand, within CCNA_00750 at 808.107 kb on - strand, within CCNA_00750 at 808.107 kb on - strand, within CCNA_00750 at 808.109 kb on + strand, within CCNA_00750 at 808.117 kb on - strand, within CCNA_00750 at 808.117 kb on - strand, within CCNA_00750 at 808.167 kb on - strand, within CCNA_00750 at 808.230 kb on - strand, within CCNA_00750 at 808.292 kb on + strand, within CCNA_00750 at 808.347 kb on + strand, within CCNA_00750 at 808.356 kb on + strand, within CCNA_00750
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 804,544 + CCNA_00747 0.70 -0.1 804,544 + CCNA_00747 0.70 -0.6 804,557 - CCNA_00747 0.71 -0.5 804,565 - CCNA_00747 0.71 +0.4 804,691 - CCNA_00747 0.81 -0.5 804,729 + CCNA_00747 0.83 -0.4 804,742 - CCNA_00747 0.84 +0.2 804,747 + CCNA_00747 0.85 -0.6 804,840 - +0.4 804,840 - +0.4 804,890 + +0.6 804,900 + -0.2 804,909 - +0.3 804,909 - -0.5 804,932 + -1.1 804,932 - +0.3 804,932 - +0.3 804,971 + -0.4 804,976 + -0.7 804,976 + +0.7 804,976 + +0.2 804,976 + +0.0 804,979 - +1.0 804,979 - +0.4 804,981 + +0.0 804,981 + +1.2 804,989 - -0.0 804,989 - -0.3 805,043 - +0.8 805,049 + +0.7 805,098 + +0.3 805,164 - +0.2 805,166 - +0.5 805,479 + +0.7 805,479 + +1.1 805,487 - -0.4 806,016 + CCNA_00749 0.28 +0.9 806,078 - CCNA_00749 0.31 -0.5 807,374 + +0.3 807,383 + +0.9 807,404 - +0.1 807,427 - -1.2 807,483 - +0.4 807,494 + +0.6 807,505 + +0.7 807,505 + +0.3 807,515 + +0.7 807,540 - +0.7 807,571 - -0.6 807,604 - +0.4 807,632 - +0.6 807,635 + +0.0 807,635 + -0.6 807,643 - +0.7 807,643 - -0.0 807,643 - +0.7 807,643 - +0.1 807,643 - +0.6 807,733 - CCNA_00750 0.14 +0.4 807,744 + CCNA_00750 0.15 +0.8 807,777 + CCNA_00750 0.18 +1.1 807,824 - CCNA_00750 0.22 +0.7 807,905 - CCNA_00750 0.30 -0.1 807,978 + CCNA_00750 0.37 +0.6 807,997 + CCNA_00750 0.39 -0.2 808,049 - CCNA_00750 0.44 -1.0 808,049 - CCNA_00750 0.44 +0.3 808,086 + CCNA_00750 0.48 +0.0 808,107 - CCNA_00750 0.50 -0.0 808,107 - CCNA_00750 0.50 +0.5 808,109 + CCNA_00750 0.50 +0.7 808,117 - CCNA_00750 0.51 +0.4 808,117 - CCNA_00750 0.51 +0.5 808,167 - CCNA_00750 0.56 +0.4 808,230 - CCNA_00750 0.62 +0.5 808,292 + CCNA_00750 0.68 -0.6 808,347 + CCNA_00750 0.73 +0.4 808,356 + CCNA_00750 0.74 +0.4
Or see this region's nucleotide sequence