Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00683 and CCNA_00684 are separated by 12 nucleotides CCNA_00684 and CCNA_00685 overlap by 4 nucleotides CCNA_00685 and CCNA_00686 are separated by 171 nucleotides
CCNA_00683: CCNA_00683 - Deoxyribodipyrimidine photo-lyase-related protein, at 738,931 to 740,460
_00683
CCNA_00684: CCNA_00684 - anti-sigma factor, ChrR-family, at 740,473 to 741,111
_00684
CCNA_00685: CCNA_00685 - RNA polymerase sigma factor, at 741,108 to 741,725
_00685
CCNA_00686: CCNA_00686 - peptidase family S41 protein, at 741,897 to 743,330
_00686
Position (kb) 740
741
742 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 739.475 kb on + strand, within CCNA_00683 at 739.480 kb on + strand, within CCNA_00683 at 739.483 kb on - strand, within CCNA_00683 at 739.483 kb on - strand, within CCNA_00683 at 739.483 kb on - strand, within CCNA_00683 at 739.485 kb on + strand, within CCNA_00683 at 739.508 kb on - strand, within CCNA_00683 at 739.566 kb on - strand, within CCNA_00683 at 739.578 kb on - strand, within CCNA_00683 at 739.609 kb on - strand, within CCNA_00683 at 739.645 kb on + strand, within CCNA_00683 at 739.645 kb on + strand, within CCNA_00683 at 739.653 kb on - strand, within CCNA_00683 at 739.653 kb on - strand, within CCNA_00683 at 739.658 kb on - strand, within CCNA_00683 at 739.659 kb on + strand, within CCNA_00683 at 739.688 kb on + strand, within CCNA_00683 at 739.720 kb on + strand, within CCNA_00683 at 739.775 kb on - strand, within CCNA_00683 at 739.792 kb on + strand, within CCNA_00683 at 739.801 kb on - strand, within CCNA_00683 at 739.845 kb on - strand, within CCNA_00683 at 739.846 kb on + strand, within CCNA_00683 at 739.904 kb on - strand, within CCNA_00683 at 739.908 kb on + strand, within CCNA_00683 at 739.926 kb on - strand, within CCNA_00683 at 739.974 kb on + strand, within CCNA_00683 at 739.979 kb on + strand, within CCNA_00683 at 739.987 kb on - strand, within CCNA_00683 at 740.039 kb on - strand, within CCNA_00683 at 740.099 kb on - strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.111 kb on + strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.120 kb on - strand, within CCNA_00683 at 740.125 kb on + strand, within CCNA_00683 at 740.125 kb on + strand, within CCNA_00683 at 740.125 kb on + strand, within CCNA_00683 at 740.187 kb on - strand, within CCNA_00683 at 740.202 kb on - strand, within CCNA_00683 at 740.222 kb on - strand, within CCNA_00683 at 740.253 kb on + strand, within CCNA_00683 at 740.253 kb on + strand, within CCNA_00683 at 740.257 kb on + strand, within CCNA_00683 at 740.261 kb on - strand, within CCNA_00683 at 740.261 kb on - strand, within CCNA_00683 at 740.282 kb on - strand, within CCNA_00683 at 740.308 kb on - strand at 740.351 kb on + strand at 740.364 kb on - strand at 740.378 kb on - strand at 740.388 kb on + strand at 740.391 kb on - strand at 740.393 kb on + strand at 740.396 kb on - strand at 740.424 kb on + strand at 740.424 kb on + strand at 740.430 kb on - strand at 740.436 kb on + strand at 740.444 kb on - strand at 740.460 kb on + strand at 740.460 kb on + strand at 740.461 kb on + strand at 740.461 kb on + strand at 740.468 kb on - strand at 740.469 kb on - strand at 740.469 kb on - strand at 740.471 kb on + strand at 740.471 kb on + strand at 740.471 kb on + strand at 740.471 kb on + strand at 740.472 kb on + strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.492 kb on + strand at 740.492 kb on + strand at 740.523 kb on + strand at 740.541 kb on - strand, within CCNA_00684 at 740.557 kb on - strand, within CCNA_00684 at 740.643 kb on - strand, within CCNA_00684 at 740.707 kb on - strand, within CCNA_00684 at 740.795 kb on - strand, within CCNA_00684 at 740.795 kb on - strand, within CCNA_00684 at 741.134 kb on + strand at 741.134 kb on + strand at 741.142 kb on - strand at 741.142 kb on - strand at 741.157 kb on - strand at 741.166 kb on - strand at 741.183 kb on - strand, within CCNA_00685 at 741.186 kb on + strand, within CCNA_00685 at 741.189 kb on - strand, within CCNA_00685 at 741.194 kb on - strand, within CCNA_00685 at 741.205 kb on - strand, within CCNA_00685 at 741.256 kb on + strand, within CCNA_00685 at 741.266 kb on + strand, within CCNA_00685 at 741.279 kb on + strand, within CCNA_00685 at 741.299 kb on + strand, within CCNA_00685 at 741.339 kb on - strand, within CCNA_00685 at 741.358 kb on - strand, within CCNA_00685 at 741.363 kb on + strand, within CCNA_00685 at 741.363 kb on + strand, within CCNA_00685 at 741.384 kb on - strand, within CCNA_00685 at 741.457 kb on - strand, within CCNA_00685 at 741.536 kb on + strand, within CCNA_00685 at 741.562 kb on - strand, within CCNA_00685 at 741.570 kb on - strand, within CCNA_00685 at 741.570 kb on - strand, within CCNA_00685 at 741.570 kb on - strand, within CCNA_00685 at 741.575 kb on + strand, within CCNA_00685 at 741.582 kb on + strand, within CCNA_00685 at 741.612 kb on + strand, within CCNA_00685 at 741.622 kb on + strand, within CCNA_00685 at 741.636 kb on + strand, within CCNA_00685 at 741.657 kb on - strand, within CCNA_00685 at 741.657 kb on - strand, within CCNA_00685 at 741.659 kb on + strand, within CCNA_00685 at 741.659 kb on - strand, within CCNA_00685 at 741.672 kb on - strand at 741.702 kb on - strand at 741.725 kb on + strand at 741.742 kb on - strand at 741.799 kb on - strand at 741.799 kb on - strand at 741.808 kb on - strand at 741.869 kb on + strand at 741.907 kb on + strand at 741.915 kb on - strand at 741.915 kb on - strand at 741.915 kb on - strand at 741.974 kb on - strand at 742.008 kb on + strand at 742.013 kb on + strand at 742.013 kb on + strand at 742.013 kb on + strand at 742.013 kb on + strand at 742.022 kb on - strand at 742.023 kb on - strand at 742.038 kb on - strand at 742.038 kb on - strand at 742.046 kb on + strand, within CCNA_00686 at 742.046 kb on + strand, within CCNA_00686 at 742.046 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.093 kb on - strand, within CCNA_00686 at 742.098 kb on + strand, within CCNA_00686 at 742.100 kb on - strand, within CCNA_00686 at 742.106 kb on - strand, within CCNA_00686 at 742.108 kb on + strand, within CCNA_00686
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 739,475 + CCNA_00683 0.36 +0.5 739,480 + CCNA_00683 0.36 +0.1 739,483 - CCNA_00683 0.36 -0.8 739,483 - CCNA_00683 0.36 -1.6 739,483 - CCNA_00683 0.36 +0.1 739,485 + CCNA_00683 0.36 -0.3 739,508 - CCNA_00683 0.38 -2.4 739,566 - CCNA_00683 0.42 -0.4 739,578 - CCNA_00683 0.42 -0.4 739,609 - CCNA_00683 0.44 -0.1 739,645 + CCNA_00683 0.47 +0.1 739,645 + CCNA_00683 0.47 -0.5 739,653 - CCNA_00683 0.47 +0.2 739,653 - CCNA_00683 0.47 +0.5 739,658 - CCNA_00683 0.48 -0.7 739,659 + CCNA_00683 0.48 -0.4 739,688 + CCNA_00683 0.49 -0.9 739,720 + CCNA_00683 0.52 +0.3 739,775 - CCNA_00683 0.55 -0.5 739,792 + CCNA_00683 0.56 -0.8 739,801 - CCNA_00683 0.57 -1.4 739,845 - CCNA_00683 0.60 -0.8 739,846 + CCNA_00683 0.60 +0.0 739,904 - CCNA_00683 0.64 -0.5 739,908 + CCNA_00683 0.64 +0.0 739,926 - CCNA_00683 0.65 +0.3 739,974 + CCNA_00683 0.68 -0.7 739,979 + CCNA_00683 0.68 -2.0 739,987 - CCNA_00683 0.69 +0.2 740,039 - CCNA_00683 0.72 -1.6 740,099 - CCNA_00683 0.76 +0.5 740,106 + CCNA_00683 0.77 +3.4 740,106 + CCNA_00683 0.77 -0.1 740,106 + CCNA_00683 0.77 +0.2 740,106 + CCNA_00683 0.77 -1.1 740,106 + CCNA_00683 0.77 -1.3 740,106 + CCNA_00683 0.77 +0.2 740,106 + CCNA_00683 0.77 -2.2 740,106 + CCNA_00683 0.77 +1.4 740,106 + CCNA_00683 0.77 +0.5 740,106 + CCNA_00683 0.77 +0.3 740,111 + CCNA_00683 0.77 -2.0 740,114 - CCNA_00683 0.77 -0.7 740,114 - CCNA_00683 0.77 +0.1 740,114 - CCNA_00683 0.77 +0.2 740,114 - CCNA_00683 0.77 -0.2 740,114 - CCNA_00683 0.77 +0.4 740,114 - CCNA_00683 0.77 +0.0 740,120 - CCNA_00683 0.78 -0.2 740,125 + CCNA_00683 0.78 -1.6 740,125 + CCNA_00683 0.78 -1.5 740,125 + CCNA_00683 0.78 +0.2 740,187 - CCNA_00683 0.82 +1.8 740,202 - CCNA_00683 0.83 -1.3 740,222 - CCNA_00683 0.84 -0.4 740,253 + CCNA_00683 0.86 -0.1 740,253 + CCNA_00683 0.86 -1.6 740,257 + CCNA_00683 0.87 -0.9 740,261 - CCNA_00683 0.87 +0.5 740,261 - CCNA_00683 0.87 -0.4 740,282 - CCNA_00683 0.88 -0.3 740,308 - -1.1 740,351 + +1.6 740,364 - +1.4 740,378 - -1.5 740,388 + -0.9 740,391 - -0.3 740,393 + -1.2 740,396 - +1.0 740,424 + -0.6 740,424 + -1.1 740,430 - +1.5 740,436 + +0.8 740,444 - +0.0 740,460 + +0.0 740,460 + +0.1 740,461 + -0.2 740,461 + +1.4 740,468 - -0.7 740,469 - +0.0 740,469 - +0.1 740,471 + -0.0 740,471 + -1.2 740,471 + -0.7 740,471 + -0.3 740,472 + -0.1 740,479 - +0.2 740,479 - +0.0 740,479 - +0.4 740,479 - +0.4 740,479 - +0.3 740,479 - +0.6 740,479 - +0.3 740,492 + -1.0 740,492 + +0.0 740,523 + +0.9 740,541 - CCNA_00684 0.11 +0.2 740,557 - CCNA_00684 0.13 +0.2 740,643 - CCNA_00684 0.27 -0.6 740,707 - CCNA_00684 0.37 +0.5 740,795 - CCNA_00684 0.50 -0.5 740,795 - CCNA_00684 0.50 -0.8 741,134 + -0.0 741,134 + -0.0 741,142 - +0.6 741,142 - +0.9 741,157 - +0.4 741,166 - +0.8 741,183 - CCNA_00685 0.12 -0.7 741,186 + CCNA_00685 0.13 -0.1 741,189 - CCNA_00685 0.13 -0.7 741,194 - CCNA_00685 0.14 -0.1 741,205 - CCNA_00685 0.16 -0.3 741,256 + CCNA_00685 0.24 -0.7 741,266 + CCNA_00685 0.26 -0.6 741,279 + CCNA_00685 0.28 -2.1 741,299 + CCNA_00685 0.31 -1.0 741,339 - CCNA_00685 0.37 -1.1 741,358 - CCNA_00685 0.40 -0.0 741,363 + CCNA_00685 0.41 -1.2 741,363 + CCNA_00685 0.41 +1.8 741,384 - CCNA_00685 0.45 +0.1 741,457 - CCNA_00685 0.56 +0.1 741,536 + CCNA_00685 0.69 -0.0 741,562 - CCNA_00685 0.73 +0.4 741,570 - CCNA_00685 0.75 +0.3 741,570 - CCNA_00685 0.75 +0.1 741,570 - CCNA_00685 0.75 -0.2 741,575 + CCNA_00685 0.76 +1.9 741,582 + CCNA_00685 0.77 -0.4 741,612 + CCNA_00685 0.82 -0.3 741,622 + CCNA_00685 0.83 -0.4 741,636 + CCNA_00685 0.85 -0.9 741,657 - CCNA_00685 0.89 -0.7 741,657 - CCNA_00685 0.89 +1.3 741,659 + CCNA_00685 0.89 -0.5 741,659 - CCNA_00685 0.89 +0.5 741,672 - +0.4 741,702 - +0.3 741,725 + -0.8 741,742 - +0.5 741,799 - +0.8 741,799 - -0.0 741,808 - +0.2 741,869 + +2.8 741,907 + -0.6 741,915 - +0.5 741,915 - +0.7 741,915 - -1.7 741,974 - -0.7 742,008 + +0.5 742,013 + -0.1 742,013 + +0.9 742,013 + -0.9 742,013 + +1.1 742,022 - -0.4 742,023 - -0.8 742,038 - -1.2 742,038 - -0.0 742,046 + CCNA_00686 0.10 -1.1 742,046 + CCNA_00686 0.10 -0.0 742,046 + CCNA_00686 0.10 -0.4 742,061 + CCNA_00686 0.11 -0.2 742,061 + CCNA_00686 0.11 -0.9 742,061 + CCNA_00686 0.11 +0.1 742,061 + CCNA_00686 0.11 +0.8 742,061 + CCNA_00686 0.11 -0.1 742,069 - CCNA_00686 0.12 -0.6 742,069 - CCNA_00686 0.12 -1.7 742,069 - CCNA_00686 0.12 +0.1 742,069 - CCNA_00686 0.12 +0.1 742,069 - CCNA_00686 0.12 -1.9 742,093 - CCNA_00686 0.14 -0.1 742,098 + CCNA_00686 0.14 +0.1 742,100 - CCNA_00686 0.14 -0.6 742,106 - CCNA_00686 0.15 -0.7 742,108 + CCNA_00686 0.15 -0.3
Or see this region's nucleotide sequence