Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00671

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00669 and CCNA_00670 overlap by 4 nucleotidesCCNA_00670 and CCNA_00671 are separated by 9 nucleotidesCCNA_00671 and CCNA_00672 are separated by 133 nucleotides CCNA_00669: CCNA_00669 - glycosyltransferase family 99 protein WbsX, at 725,750 to 728,206 _00669 CCNA_00670: CCNA_00670 - ABC-type polysaccharide/polyol phosphate transport system, ATPase component, at 728,203 to 728,955 _00670 CCNA_00671: CCNA_00671 - ABC-type polysaccharide/polyol phosphate export system, permease component, at 728,965 to 729,756 _00671 CCNA_00672: CCNA_00672 - hypothetical protein, at 729,890 to 730,693 _00672 Position (kb) 728 729 730Strain fitness (log2 ratio) -2 -1 0 1 2 3at 728.031 kb on - strandat 728.031 kb on - strandat 728.057 kb on - strandat 728.067 kb on + strandat 728.075 kb on - strandat 728.131 kb on - strandat 728.178 kb on + strandat 728.236 kb on + strandat 728.236 kb on + strandat 728.269 kb on + strandat 728.290 kb on + strand, within CCNA_00670at 728.316 kb on + strand, within CCNA_00670at 728.318 kb on - strand, within CCNA_00670at 728.347 kb on - strand, within CCNA_00670at 728.352 kb on + strand, within CCNA_00670at 728.413 kb on - strand, within CCNA_00670at 728.465 kb on - strand, within CCNA_00670at 728.568 kb on - strand, within CCNA_00670at 728.598 kb on + strand, within CCNA_00670at 728.664 kb on - strand, within CCNA_00670at 728.728 kb on - strand, within CCNA_00670at 728.728 kb on - strand, within CCNA_00670at 728.747 kb on - strand, within CCNA_00670at 728.845 kb on - strand, within CCNA_00670at 728.866 kb on + strand, within CCNA_00670at 728.871 kb on + strand, within CCNA_00670at 728.940 kb on - strandat 729.004 kb on - strandat 729.058 kb on + strand, within CCNA_00671at 729.090 kb on - strand, within CCNA_00671at 729.101 kb on + strand, within CCNA_00671at 729.145 kb on - strand, within CCNA_00671at 729.170 kb on + strand, within CCNA_00671at 729.178 kb on - strand, within CCNA_00671at 729.178 kb on - strand, within CCNA_00671at 729.215 kb on - strand, within CCNA_00671at 729.229 kb on - strand, within CCNA_00671at 729.252 kb on + strand, within CCNA_00671at 729.278 kb on + strand, within CCNA_00671at 729.278 kb on - strand, within CCNA_00671at 729.323 kb on - strand, within CCNA_00671at 729.382 kb on - strand, within CCNA_00671at 729.538 kb on - strand, within CCNA_00671at 729.545 kb on - strand, within CCNA_00671at 729.556 kb on - strand, within CCNA_00671at 729.562 kb on - strand, within CCNA_00671at 729.589 kb on + strand, within CCNA_00671at 729.592 kb on - strand, within CCNA_00671at 729.616 kb on - strand, within CCNA_00671at 729.680 kb on - strandat 729.699 kb on - strandat 729.719 kb on + strandat 729.727 kb on + strandat 729.735 kb on - strandat 729.782 kb on + strandat 729.790 kb on - strandat 729.830 kb on + strandat 729.837 kb on - strandat 729.858 kb on - strandat 729.911 kb on + strandat 729.927 kb on + strandat 729.927 kb on + strandat 729.927 kb on + strandat 729.927 kb on + strandat 729.933 kb on + strandat 729.950 kb on - strandat 729.950 kb on - strandat 729.950 kb on - strandat 729.981 kb on + strand, within CCNA_00672at 729.981 kb on + strand, within CCNA_00672at 729.981 kb on + strand, within CCNA_00672at 729.989 kb on - strand, within CCNA_00672at 729.989 kb on - strand, within CCNA_00672at 729.989 kb on - strand, within CCNA_00672at 729.999 kb on - strand, within CCNA_00672at 730.016 kb on - strand, within CCNA_00672at 730.038 kb on - strand, within CCNA_00672at 730.045 kb on + strand, within CCNA_00672at 730.066 kb on - strand, within CCNA_00672at 730.077 kb on + strand, within CCNA_00672at 730.077 kb on + strand, within CCNA_00672at 730.090 kb on - strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.112 kb on - strand, within CCNA_00672at 730.112 kb on - strand, within CCNA_00672at 730.112 kb on - strand, within CCNA_00672at 730.112 kb on - strand, within CCNA_00672at 730.112 kb on - strand, within CCNA_00672at 730.112 kb on - strand, within CCNA_00672at 730.112 kb on - strand, within CCNA_00672at 730.112 kb on - strand, within CCNA_00672at 730.122 kb on - strand, within CCNA_00672at 730.139 kb on - strand, within CCNA_00672at 730.223 kb on + strand, within CCNA_00672at 730.223 kb on + strand, within CCNA_00672at 730.243 kb on + strand, within CCNA_00672at 730.253 kb on + strand, within CCNA_00672at 730.260 kb on + strand, within CCNA_00672at 730.265 kb on + strand, within CCNA_00672at 730.272 kb on + strand, within CCNA_00672at 730.352 kb on + strand, within CCNA_00672at 730.360 kb on - strand, within CCNA_00672at 730.360 kb on - strand, within CCNA_00672at 730.390 kb on + strand, within CCNA_00672at 730.398 kb on - strand, within CCNA_00672at 730.403 kb on - strand, within CCNA_00672at 730.403 kb on - strand, within CCNA_00672at 730.445 kb on - strand, within CCNA_00672at 730.524 kb on + strand, within CCNA_00672at 730.556 kb on + strand, within CCNA_00672at 730.559 kb on - strand, within CCNA_00672at 730.564 kb on - strand, within CCNA_00672at 730.564 kb on - strand, within CCNA_00672at 730.564 kb on - strand, within CCNA_00672at 730.565 kb on - strand, within CCNA_00672at 730.586 kb on + strand, within CCNA_00672at 730.605 kb on + strand, within CCNA_00672at 730.612 kb on - strand, within CCNA_00672at 730.612 kb on - strand, within CCNA_00672at 730.613 kb on - strandat 730.645 kb on - strandat 730.682 kb on - strandat 730.689 kb on + strandat 730.695 kb on + strandat 730.695 kb on + strandat 730.695 kb on + strandat 730.703 kb on - strandat 730.721 kb on - strandat 730.721 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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728,031 - +0.5
728,031 - +1.0
728,057 - +0.8
728,067 + -0.7
728,075 - +0.4
728,131 - +1.2
728,178 + -0.8
728,236 + -2.2
728,236 + -0.6
728,269 + -0.5
728,290 + CCNA_00670 0.12 +0.8
728,316 + CCNA_00670 0.15 -1.4
728,318 - CCNA_00670 0.15 +0.5
728,347 - CCNA_00670 0.19 -0.2
728,352 + CCNA_00670 0.20 +2.8
728,413 - CCNA_00670 0.28 +0.2
728,465 - CCNA_00670 0.35 +0.8
728,568 - CCNA_00670 0.48 +0.8
728,598 + CCNA_00670 0.52 -1.7
728,664 - CCNA_00670 0.61 +0.2
728,728 - CCNA_00670 0.70 +0.2
728,728 - CCNA_00670 0.70 +1.6
728,747 - CCNA_00670 0.72 -0.0
728,845 - CCNA_00670 0.85 +1.0
728,866 + CCNA_00670 0.88 +2.0
728,871 + CCNA_00670 0.89 -0.6
728,940 - -0.0
729,004 - -0.0
729,058 + CCNA_00671 0.12 +0.8
729,090 - CCNA_00671 0.16 +2.8
729,101 + CCNA_00671 0.17 +0.2
729,145 - CCNA_00671 0.23 +0.4
729,170 + CCNA_00671 0.26 +0.2
729,178 - CCNA_00671 0.27 -1.9
729,178 - CCNA_00671 0.27 -1.1
729,215 - CCNA_00671 0.32 +0.2
729,229 - CCNA_00671 0.33 +0.0
729,252 + CCNA_00671 0.36 -0.5
729,278 + CCNA_00671 0.40 +0.8
729,278 - CCNA_00671 0.40 -2.5
729,323 - CCNA_00671 0.45 -1.1
729,382 - CCNA_00671 0.53 -0.4
729,538 - CCNA_00671 0.72 -0.5
729,545 - CCNA_00671 0.73 -0.5
729,556 - CCNA_00671 0.75 +1.0
729,562 - CCNA_00671 0.75 +0.6
729,589 + CCNA_00671 0.79 +0.8
729,592 - CCNA_00671 0.79 +2.0
729,616 - CCNA_00671 0.82 +1.5
729,680 - -0.2
729,699 - +0.8
729,719 + -0.8
729,727 + +1.5
729,735 - -0.0
729,782 + -0.0
729,790 - +0.8
729,830 + -0.7
729,837 - +0.2
729,858 - +0.6
729,911 + -0.5
729,927 + +0.3
729,927 + -1.6
729,927 + +1.5
729,927 + -0.8
729,933 + +0.5
729,950 - -0.6
729,950 - -0.6
729,950 - -0.1
729,981 + CCNA_00672 0.11 -0.5
729,981 + CCNA_00672 0.11 -0.9
729,981 + CCNA_00672 0.11 +1.0
729,989 - CCNA_00672 0.12 -0.3
729,989 - CCNA_00672 0.12 -0.4
729,989 - CCNA_00672 0.12 -0.4
729,999 - CCNA_00672 0.14 +0.6
730,016 - CCNA_00672 0.16 -0.8
730,038 - CCNA_00672 0.18 +2.0
730,045 + CCNA_00672 0.19 -0.1
730,066 - CCNA_00672 0.22 +0.0
730,077 + CCNA_00672 0.23 +0.1
730,077 + CCNA_00672 0.23 -1.1
730,090 - CCNA_00672 0.25 -0.4
730,104 + CCNA_00672 0.27 -0.5
730,104 + CCNA_00672 0.27 -0.2
730,104 + CCNA_00672 0.27 -0.3
730,104 + CCNA_00672 0.27 -1.9
730,104 + CCNA_00672 0.27 -0.7
730,104 + CCNA_00672 0.27 -0.8
730,112 - CCNA_00672 0.28 -0.8
730,112 - CCNA_00672 0.28 -0.6
730,112 - CCNA_00672 0.28 -1.0
730,112 - CCNA_00672 0.28 +0.8
730,112 - CCNA_00672 0.28 -0.7
730,112 - CCNA_00672 0.28 +1.3
730,112 - CCNA_00672 0.28 -0.6
730,112 - CCNA_00672 0.28 -0.8
730,122 - CCNA_00672 0.29 -0.0
730,139 - CCNA_00672 0.31 -1.7
730,223 + CCNA_00672 0.41 +0.8
730,223 + CCNA_00672 0.41 +0.5
730,243 + CCNA_00672 0.44 +0.4
730,253 + CCNA_00672 0.45 +1.4
730,260 + CCNA_00672 0.46 +0.6
730,265 + CCNA_00672 0.47 +0.1
730,272 + CCNA_00672 0.48 -0.1
730,352 + CCNA_00672 0.57 -0.6
730,360 - CCNA_00672 0.58 -2.3
730,360 - CCNA_00672 0.58 -0.9
730,390 + CCNA_00672 0.62 -0.6
730,398 - CCNA_00672 0.63 +0.0
730,403 - CCNA_00672 0.64 -0.4
730,403 - CCNA_00672 0.64 -0.2
730,445 - CCNA_00672 0.69 +0.9
730,524 + CCNA_00672 0.79 +0.6
730,556 + CCNA_00672 0.83 +0.6
730,559 - CCNA_00672 0.83 +0.6
730,564 - CCNA_00672 0.84 +0.1
730,564 - CCNA_00672 0.84 +0.1
730,564 - CCNA_00672 0.84 +1.9
730,565 - CCNA_00672 0.84 -0.0
730,586 + CCNA_00672 0.87 +0.4
730,605 + CCNA_00672 0.89 -0.1
730,612 - CCNA_00672 0.90 +1.3
730,612 - CCNA_00672 0.90 +0.5
730,613 - +0.1
730,645 - -0.8
730,682 - -1.2
730,689 + -1.2
730,695 + +0.8
730,695 + +0.4
730,695 + +0.5
730,703 - +0.5
730,721 - -0.8
730,721 - -2.2

Or see this region's nucleotide sequence