Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00668

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00667 and CCNA_00668 are separated by 10 nucleotidesCCNA_00668 and CCNA_00669 overlap by 4 nucleotides CCNA_00667: CCNA_00667 - lipopolysaccharide biosynthesis protein, at 723,506 to 724,690 _00667 CCNA_00668: CCNA_00668 - capsular polysaccharide biosynthesis protein, at 724,701 to 725,753 _00668 CCNA_00669: CCNA_00669 - glycosyltransferase family 99 protein WbsX, at 725,750 to 728,206 _00669 Position (kb) 724 725 726Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 723.705 kb on - strand, within CCNA_00667at 723.752 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.802 kb on + strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.861 kb on + strand, within CCNA_00667at 723.883 kb on + strand, within CCNA_00667at 723.889 kb on + strand, within CCNA_00667at 723.889 kb on + strand, within CCNA_00667at 723.908 kb on + strand, within CCNA_00667at 723.943 kb on + strand, within CCNA_00667at 723.950 kb on + strand, within CCNA_00667at 723.952 kb on + strand, within CCNA_00667at 723.953 kb on - strand, within CCNA_00667at 723.976 kb on + strand, within CCNA_00667at 723.999 kb on + strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.024 kb on - strand, within CCNA_00667at 724.103 kb on + strand, within CCNA_00667at 724.126 kb on + strand, within CCNA_00667at 724.126 kb on + strand, within CCNA_00667at 724.134 kb on - strand, within CCNA_00667at 724.177 kb on + strand, within CCNA_00667at 724.179 kb on + strand, within CCNA_00667at 724.194 kb on + strand, within CCNA_00667at 724.202 kb on - strand, within CCNA_00667at 724.202 kb on - strand, within CCNA_00667at 724.220 kb on + strand, within CCNA_00667at 724.220 kb on + strand, within CCNA_00667at 724.255 kb on + strand, within CCNA_00667at 724.263 kb on - strand, within CCNA_00667at 724.263 kb on - strand, within CCNA_00667at 724.263 kb on - strand, within CCNA_00667at 724.276 kb on + strand, within CCNA_00667at 724.383 kb on + strand, within CCNA_00667at 724.388 kb on + strand, within CCNA_00667at 724.419 kb on + strand, within CCNA_00667at 724.419 kb on + strand, within CCNA_00667at 724.448 kb on - strand, within CCNA_00667at 724.521 kb on + strand, within CCNA_00667at 724.526 kb on - strand, within CCNA_00667at 724.622 kb on + strandat 724.631 kb on + strandat 724.634 kb on - strandat 724.649 kb on - strandat 724.705 kb on - strandat 724.705 kb on - strandat 724.780 kb on + strandat 724.785 kb on - strandat 724.840 kb on + strand, within CCNA_00668at 724.876 kb on - strand, within CCNA_00668at 724.948 kb on + strand, within CCNA_00668at 724.948 kb on + strand, within CCNA_00668at 724.956 kb on - strand, within CCNA_00668at 724.977 kb on - strand, within CCNA_00668at 725.032 kb on + strand, within CCNA_00668at 725.040 kb on - strand, within CCNA_00668at 725.139 kb on - strand, within CCNA_00668at 725.141 kb on + strand, within CCNA_00668at 725.171 kb on + strand, within CCNA_00668at 725.198 kb on - strand, within CCNA_00668at 725.229 kb on + strand, within CCNA_00668at 725.247 kb on - strand, within CCNA_00668at 725.259 kb on - strand, within CCNA_00668at 725.259 kb on - strand, within CCNA_00668at 725.259 kb on - strand, within CCNA_00668at 725.358 kb on - strand, within CCNA_00668at 725.359 kb on + strand, within CCNA_00668at 725.367 kb on - strand, within CCNA_00668at 725.382 kb on + strand, within CCNA_00668at 725.466 kb on - strand, within CCNA_00668at 725.466 kb on - strand, within CCNA_00668at 725.476 kb on - strand, within CCNA_00668at 725.551 kb on + strand, within CCNA_00668at 725.564 kb on - strand, within CCNA_00668at 725.664 kb on - strandat 725.692 kb on - strandat 725.697 kb on + strandat 725.704 kb on + strandat 725.705 kb on - strandat 725.705 kb on - strandat 725.755 kb on + strandat 725.815 kb on + strandat 725.840 kb on + strandat 725.840 kb on + strandat 725.840 kb on + strandat 725.845 kb on + strandat 725.848 kb on - strandat 725.848 kb on - strandat 725.848 kb on - strandat 725.994 kb on + strandat 726.004 kb on - strand, within CCNA_00669at 726.004 kb on - strand, within CCNA_00669at 726.089 kb on + strand, within CCNA_00669at 726.089 kb on + strand, within CCNA_00669at 726.094 kb on + strand, within CCNA_00669at 726.120 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.160 kb on + strand, within CCNA_00669at 726.201 kb on - strand, within CCNA_00669at 726.208 kb on + strand, within CCNA_00669at 726.275 kb on - strand, within CCNA_00669at 726.308 kb on + strand, within CCNA_00669at 726.308 kb on + strand, within CCNA_00669at 726.316 kb on - strand, within CCNA_00669at 726.342 kb on + strand, within CCNA_00669at 726.350 kb on - strand, within CCNA_00669at 726.352 kb on + strand, within CCNA_00669at 726.398 kb on + strand, within CCNA_00669at 726.403 kb on + strand, within CCNA_00669at 726.403 kb on + strand, within CCNA_00669at 726.408 kb on + strand, within CCNA_00669at 726.416 kb on - strand, within CCNA_00669at 726.416 kb on - strand, within CCNA_00669at 726.416 kb on - strand, within CCNA_00669at 726.421 kb on + strand, within CCNA_00669at 726.491 kb on + strand, within CCNA_00669at 726.494 kb on - strand, within CCNA_00669at 726.494 kb on - strand, within CCNA_00669at 726.600 kb on - strand, within CCNA_00669at 726.603 kb on + strand, within CCNA_00669at 726.605 kb on + strand, within CCNA_00669at 726.721 kb on - strand, within CCNA_00669at 726.723 kb on + strand, within CCNA_00669at 726.751 kb on - strand, within CCNA_00669

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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723,705 - CCNA_00667 0.17 +0.7
723,752 + CCNA_00667 0.21 -2.1
723,797 + CCNA_00667 0.25 -0.5
723,797 + CCNA_00667 0.25 -2.0
723,797 + CCNA_00667 0.25 +1.2
723,797 + CCNA_00667 0.25 +1.5
723,802 + CCNA_00667 0.25 -0.2
723,805 - CCNA_00667 0.25 -0.2
723,805 - CCNA_00667 0.25 -0.8
723,861 + CCNA_00667 0.30 +0.0
723,883 + CCNA_00667 0.32 -0.8
723,889 + CCNA_00667 0.32 +0.5
723,889 + CCNA_00667 0.32 +0.2
723,908 + CCNA_00667 0.34 -0.7
723,943 + CCNA_00667 0.37 -0.5
723,950 + CCNA_00667 0.37 -0.8
723,952 + CCNA_00667 0.38 +0.8
723,953 - CCNA_00667 0.38 -1.3
723,976 + CCNA_00667 0.40 -0.0
723,999 + CCNA_00667 0.42 +1.8
724,016 + CCNA_00667 0.43 +0.8
724,016 + CCNA_00667 0.43 -0.2
724,016 + CCNA_00667 0.43 -0.6
724,016 + CCNA_00667 0.43 -0.0
724,024 - CCNA_00667 0.44 -0.2
724,103 + CCNA_00667 0.50 -0.4
724,126 + CCNA_00667 0.52 +1.9
724,126 + CCNA_00667 0.52 -1.5
724,134 - CCNA_00667 0.53 -1.3
724,177 + CCNA_00667 0.57 +1.2
724,179 + CCNA_00667 0.57 -1.5
724,194 + CCNA_00667 0.58 -1.7
724,202 - CCNA_00667 0.59 -0.7
724,202 - CCNA_00667 0.59 +0.4
724,220 + CCNA_00667 0.60 -1.0
724,220 + CCNA_00667 0.60 -1.5
724,255 + CCNA_00667 0.63 +0.0
724,263 - CCNA_00667 0.64 -0.5
724,263 - CCNA_00667 0.64 +1.2
724,263 - CCNA_00667 0.64 -1.9
724,276 + CCNA_00667 0.65 -1.9
724,383 + CCNA_00667 0.74 -0.0
724,388 + CCNA_00667 0.74 -0.2
724,419 + CCNA_00667 0.77 -0.4
724,419 + CCNA_00667 0.77 +0.7
724,448 - CCNA_00667 0.79 -0.7
724,521 + CCNA_00667 0.86 -0.8
724,526 - CCNA_00667 0.86 +0.3
724,622 + -0.5
724,631 + +0.5
724,634 - -1.1
724,649 - -0.4
724,705 - +0.4
724,705 - -0.8
724,780 + -0.0
724,785 - -0.7
724,840 + CCNA_00668 0.13 -1.6
724,876 - CCNA_00668 0.17 -1.9
724,948 + CCNA_00668 0.23 +0.4
724,948 + CCNA_00668 0.23 -0.7
724,956 - CCNA_00668 0.24 +0.4
724,977 - CCNA_00668 0.26 -1.4
725,032 + CCNA_00668 0.31 -0.9
725,040 - CCNA_00668 0.32 -1.0
725,139 - CCNA_00668 0.42 -1.4
725,141 + CCNA_00668 0.42 -1.1
725,171 + CCNA_00668 0.45 +1.8
725,198 - CCNA_00668 0.47 -0.7
725,229 + CCNA_00668 0.50 -1.1
725,247 - CCNA_00668 0.52 -0.0
725,259 - CCNA_00668 0.53 +0.4
725,259 - CCNA_00668 0.53 +2.1
725,259 - CCNA_00668 0.53 -1.0
725,358 - CCNA_00668 0.62 -0.7
725,359 + CCNA_00668 0.62 -0.9
725,367 - CCNA_00668 0.63 -0.7
725,382 + CCNA_00668 0.65 -1.4
725,466 - CCNA_00668 0.73 +0.6
725,466 - CCNA_00668 0.73 -1.2
725,476 - CCNA_00668 0.74 +1.3
725,551 + CCNA_00668 0.81 -2.6
725,564 - CCNA_00668 0.82 -0.3
725,664 - +1.8
725,692 - +0.1
725,697 + -0.8
725,704 + -0.1
725,705 - -0.0
725,705 - -0.9
725,755 + -0.4
725,815 + -1.0
725,840 + -0.1
725,840 + +1.2
725,840 + +0.8
725,845 + -1.6
725,848 - -0.5
725,848 - +0.1
725,848 - -1.0
725,994 + +0.5
726,004 - CCNA_00669 0.10 -0.8
726,004 - CCNA_00669 0.10 -0.7
726,089 + CCNA_00669 0.14 -0.8
726,089 + CCNA_00669 0.14 +0.1
726,094 + CCNA_00669 0.14 +0.5
726,120 + CCNA_00669 0.15 -1.3
726,150 + CCNA_00669 0.16 -0.2
726,150 + CCNA_00669 0.16 -0.1
726,150 + CCNA_00669 0.16 -0.4
726,150 + CCNA_00669 0.16 +0.0
726,150 + CCNA_00669 0.16 -1.4
726,158 - CCNA_00669 0.17 +0.9
726,158 - CCNA_00669 0.17 -0.4
726,158 - CCNA_00669 0.17 -0.3
726,158 - CCNA_00669 0.17 -0.2
726,160 + CCNA_00669 0.17 +1.6
726,201 - CCNA_00669 0.18 +0.7
726,208 + CCNA_00669 0.19 +0.0
726,275 - CCNA_00669 0.21 +0.5
726,308 + CCNA_00669 0.23 +0.6
726,308 + CCNA_00669 0.23 +0.0
726,316 - CCNA_00669 0.23 +0.1
726,342 + CCNA_00669 0.24 +0.5
726,350 - CCNA_00669 0.24 -0.7
726,352 + CCNA_00669 0.25 -2.8
726,398 + CCNA_00669 0.26 +0.5
726,403 + CCNA_00669 0.27 -0.4
726,403 + CCNA_00669 0.27 +0.5
726,408 + CCNA_00669 0.27 -1.1
726,416 - CCNA_00669 0.27 -1.5
726,416 - CCNA_00669 0.27 +0.2
726,416 - CCNA_00669 0.27 +0.2
726,421 + CCNA_00669 0.27 -0.3
726,491 + CCNA_00669 0.30 -2.1
726,494 - CCNA_00669 0.30 +0.1
726,494 - CCNA_00669 0.30 +1.4
726,600 - CCNA_00669 0.35 +0.6
726,603 + CCNA_00669 0.35 -1.7
726,605 + CCNA_00669 0.35 -0.0
726,721 - CCNA_00669 0.40 -0.2
726,723 + CCNA_00669 0.40 -0.7
726,751 - CCNA_00669 0.41 -1.2

Or see this region's nucleotide sequence