Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00596

Experiment: PYE no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00595 and CCNA_00596 overlap by 43 nucleotidesCCNA_00596 and CCNA_00597 are separated by 158 nucleotides CCNA_00595: CCNA_00595 - FecR family protein, at 626,899 to 627,888 _00595 CCNA_00596: CCNA_00596 - RpoE-family sigma factor, at 627,846 to 628,364 _00596 CCNA_00597: CCNA_00597 - TonB-dependent receptor, at 628,523 to 631,663 _00597 Position (kb) 627 628 629Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 626.854 kb on - strandat 626.855 kb on - strandat 626.856 kb on - strandat 626.858 kb on + strandat 626.858 kb on + strandat 626.858 kb on + strandat 626.866 kb on - strandat 626.866 kb on - strandat 626.866 kb on - strandat 626.893 kb on - strandat 626.904 kb on - strandat 626.914 kb on - strandat 626.947 kb on + strandat 626.954 kb on + strandat 627.022 kb on + strand, within CCNA_00595at 627.030 kb on - strand, within CCNA_00595at 627.030 kb on - strand, within CCNA_00595at 627.043 kb on + strand, within CCNA_00595at 627.043 kb on + strand, within CCNA_00595at 627.043 kb on + strand, within CCNA_00595at 627.051 kb on - strand, within CCNA_00595at 627.051 kb on - strand, within CCNA_00595at 627.051 kb on - strand, within CCNA_00595at 627.051 kb on - strand, within CCNA_00595at 627.052 kb on - strand, within CCNA_00595at 627.103 kb on + strand, within CCNA_00595at 627.103 kb on + strand, within CCNA_00595at 627.103 kb on + strand, within CCNA_00595at 627.103 kb on + strand, within CCNA_00595at 627.111 kb on - strand, within CCNA_00595at 627.111 kb on - strand, within CCNA_00595at 627.111 kb on - strand, within CCNA_00595at 627.111 kb on - strand, within CCNA_00595at 627.111 kb on - strand, within CCNA_00595at 627.111 kb on - strand, within CCNA_00595at 627.111 kb on - strand, within CCNA_00595at 627.111 kb on - strand, within CCNA_00595at 627.111 kb on - strand, within CCNA_00595at 627.128 kb on - strand, within CCNA_00595at 627.187 kb on + strand, within CCNA_00595at 627.196 kb on + strand, within CCNA_00595at 627.196 kb on + strand, within CCNA_00595at 627.204 kb on - strand, within CCNA_00595at 627.206 kb on + strand, within CCNA_00595at 627.206 kb on + strand, within CCNA_00595at 627.209 kb on - strand, within CCNA_00595at 627.220 kb on + strand, within CCNA_00595at 627.220 kb on + strand, within CCNA_00595at 627.228 kb on - strand, within CCNA_00595at 627.300 kb on + strand, within CCNA_00595at 627.309 kb on - strand, within CCNA_00595at 627.314 kb on - strand, within CCNA_00595at 627.320 kb on + strand, within CCNA_00595at 627.321 kb on + strand, within CCNA_00595at 627.328 kb on - strand, within CCNA_00595at 627.371 kb on - strand, within CCNA_00595at 627.380 kb on + strand, within CCNA_00595at 627.380 kb on + strand, within CCNA_00595at 627.380 kb on + strand, within CCNA_00595at 627.385 kb on + strand, within CCNA_00595at 627.388 kb on - strand, within CCNA_00595at 627.388 kb on - strand, within CCNA_00595at 627.388 kb on - strand, within CCNA_00595at 627.388 kb on - strand, within CCNA_00595at 627.388 kb on - strand, within CCNA_00595at 627.526 kb on + strand, within CCNA_00595at 627.534 kb on - strand, within CCNA_00595at 627.534 kb on - strand, within CCNA_00595at 627.546 kb on - strand, within CCNA_00595at 627.550 kb on + strand, within CCNA_00595at 627.551 kb on + strand, within CCNA_00595at 627.558 kb on - strand, within CCNA_00595at 627.558 kb on - strand, within CCNA_00595at 627.558 kb on - strand, within CCNA_00595at 627.565 kb on + strand, within CCNA_00595at 627.585 kb on - strand, within CCNA_00595at 627.598 kb on + strand, within CCNA_00595at 627.627 kb on - strand, within CCNA_00595at 627.672 kb on + strand, within CCNA_00595at 627.680 kb on - strand, within CCNA_00595at 627.683 kb on + strand, within CCNA_00595at 627.729 kb on + strand, within CCNA_00595at 627.759 kb on - strand, within CCNA_00595at 627.777 kb on + strand, within CCNA_00595at 627.817 kb on - strandat 627.833 kb on + strandat 627.833 kb on + strandat 627.863 kb on - strandat 627.867 kb on - strandat 627.867 kb on - strandat 627.868 kb on + strandat 627.875 kb on + strandat 627.876 kb on - strandat 627.876 kb on - strandat 627.878 kb on + strandat 627.899 kb on - strand, within CCNA_00596at 627.903 kb on + strand, within CCNA_00596at 627.904 kb on + strand, within CCNA_00596at 627.912 kb on + strand, within CCNA_00596at 627.920 kb on - strand, within CCNA_00596at 627.920 kb on - strand, within CCNA_00596at 627.920 kb on - strand, within CCNA_00596at 628.006 kb on + strand, within CCNA_00596at 628.014 kb on - strand, within CCNA_00596at 628.014 kb on - strand, within CCNA_00596at 628.016 kb on + strand, within CCNA_00596at 628.016 kb on + strand, within CCNA_00596at 628.024 kb on - strand, within CCNA_00596at 628.030 kb on - strand, within CCNA_00596at 628.063 kb on + strand, within CCNA_00596at 628.068 kb on + strand, within CCNA_00596at 628.068 kb on + strand, within CCNA_00596at 628.076 kb on + strand, within CCNA_00596at 628.084 kb on - strand, within CCNA_00596at 628.084 kb on - strand, within CCNA_00596at 628.102 kb on - strand, within CCNA_00596at 628.112 kb on - strand, within CCNA_00596at 628.129 kb on + strand, within CCNA_00596at 628.129 kb on + strand, within CCNA_00596at 628.177 kb on + strand, within CCNA_00596at 628.184 kb on + strand, within CCNA_00596at 628.185 kb on - strand, within CCNA_00596at 628.187 kb on + strand, within CCNA_00596at 628.192 kb on + strand, within CCNA_00596at 628.205 kb on - strand, within CCNA_00596at 628.259 kb on - strand, within CCNA_00596at 628.267 kb on - strand, within CCNA_00596at 628.280 kb on + strand, within CCNA_00596at 628.288 kb on - strand, within CCNA_00596at 628.290 kb on + strand, within CCNA_00596at 628.338 kb on - strandat 628.379 kb on + strandat 628.390 kb on + strandat 628.393 kb on - strandat 628.398 kb on - strandat 628.407 kb on + strandat 628.415 kb on - strandat 628.439 kb on - strandat 628.439 kb on - strandat 628.439 kb on - strandat 628.451 kb on + strandat 628.451 kb on + strandat 628.451 kb on + strandat 628.454 kb on - strandat 628.459 kb on - strandat 628.459 kb on - strandat 628.473 kb on - strandat 628.476 kb on + strandat 628.476 kb on + strandat 628.476 kb on + strandat 628.476 kb on + strandat 628.476 kb on + strandat 628.484 kb on - strandat 628.498 kb on - strandat 628.503 kb on + strandat 628.503 kb on + strandat 628.503 kb on + strandat 628.511 kb on + strandat 628.519 kb on + strandat 628.528 kb on - strandat 628.528 kb on - strandat 628.534 kb on - strandat 628.534 kb on - strandat 628.534 kb on - strandat 628.557 kb on + strandat 628.600 kb on + strandat 628.608 kb on - strandat 628.652 kb on + strandat 628.672 kb on - strandat 628.679 kb on - strandat 628.684 kb on - strandat 628.690 kb on - strandat 628.726 kb on - strandat 628.750 kb on - strandat 628.814 kb on + strandat 628.827 kb on - strandat 628.844 kb on + strand, within CCNA_00597at 628.878 kb on - strand, within CCNA_00597at 628.889 kb on - strand, within CCNA_00597at 628.915 kb on - strand, within CCNA_00597at 628.947 kb on + strand, within CCNA_00597at 628.950 kb on + strand, within CCNA_00597at 628.966 kb on - strand, within CCNA_00597at 628.984 kb on - strand, within CCNA_00597at 629.014 kb on - strand, within CCNA_00597at 629.014 kb on - strand, within CCNA_00597at 629.016 kb on - strand, within CCNA_00597at 629.016 kb on - strand, within CCNA_00597at 629.055 kb on - strand, within CCNA_00597at 629.091 kb on - strand, within CCNA_00597at 629.131 kb on - strand, within CCNA_00597at 629.131 kb on - strand, within CCNA_00597at 629.131 kb on - strand, within CCNA_00597at 629.192 kb on + strand, within CCNA_00597at 629.210 kb on + strand, within CCNA_00597at 629.225 kb on + strand, within CCNA_00597at 629.226 kb on + strand, within CCNA_00597at 629.226 kb on + strand, within CCNA_00597at 629.226 kb on + strand, within CCNA_00597at 629.249 kb on + strand, within CCNA_00597at 629.250 kb on + strand, within CCNA_00597at 629.256 kb on - strand, within CCNA_00597at 629.274 kb on + strand, within CCNA_00597at 629.274 kb on + strand, within CCNA_00597at 629.282 kb on - strand, within CCNA_00597at 629.282 kb on - strand, within CCNA_00597at 629.282 kb on - strand, within CCNA_00597at 629.282 kb on - strand, within CCNA_00597at 629.292 kb on - strand, within CCNA_00597at 629.342 kb on + strand, within CCNA_00597at 629.342 kb on + strand, within CCNA_00597

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
remove
626,854 - -0.6
626,855 - -0.8
626,856 - +1.0
626,858 + -1.3
626,858 + -0.1
626,858 + +1.1
626,866 - -0.3
626,866 - +0.8
626,866 - +2.8
626,893 - +0.6
626,904 - +0.5
626,914 - -0.6
626,947 + +0.1
626,954 + +0.8
627,022 + CCNA_00595 0.12 +0.7
627,030 - CCNA_00595 0.13 +0.7
627,030 - CCNA_00595 0.13 +0.1
627,043 + CCNA_00595 0.15 +0.5
627,043 + CCNA_00595 0.15 -1.9
627,043 + CCNA_00595 0.15 -1.3
627,051 - CCNA_00595 0.15 +0.6
627,051 - CCNA_00595 0.15 -0.3
627,051 - CCNA_00595 0.15 +0.3
627,051 - CCNA_00595 0.15 +0.1
627,052 - CCNA_00595 0.15 -0.3
627,103 + CCNA_00595 0.21 -0.2
627,103 + CCNA_00595 0.21 +0.8
627,103 + CCNA_00595 0.21 -2.0
627,103 + CCNA_00595 0.21 +0.1
627,111 - CCNA_00595 0.21 +0.6
627,111 - CCNA_00595 0.21 -0.1
627,111 - CCNA_00595 0.21 +1.1
627,111 - CCNA_00595 0.21 +0.5
627,111 - CCNA_00595 0.21 +1.1
627,111 - CCNA_00595 0.21 -0.3
627,111 - CCNA_00595 0.21 +1.3
627,111 - CCNA_00595 0.21 -0.5
627,111 - CCNA_00595 0.21 +0.7
627,128 - CCNA_00595 0.23 +0.3
627,187 + CCNA_00595 0.29 -1.0
627,196 + CCNA_00595 0.30 -1.4
627,196 + CCNA_00595 0.30 -0.4
627,204 - CCNA_00595 0.31 -0.1
627,206 + CCNA_00595 0.31 -1.2
627,206 + CCNA_00595 0.31 +0.5
627,209 - CCNA_00595 0.31 +0.5
627,220 + CCNA_00595 0.32 +0.9
627,220 + CCNA_00595 0.32 +0.1
627,228 - CCNA_00595 0.33 +0.3
627,300 + CCNA_00595 0.41 +2.0
627,309 - CCNA_00595 0.41 +0.5
627,314 - CCNA_00595 0.42 -0.8
627,320 + CCNA_00595 0.43 -1.1
627,321 + CCNA_00595 0.43 -1.2
627,328 - CCNA_00595 0.43 +0.7
627,371 - CCNA_00595 0.48 -0.0
627,380 + CCNA_00595 0.49 +2.4
627,380 + CCNA_00595 0.49 +2.4
627,380 + CCNA_00595 0.49 -1.0
627,385 + CCNA_00595 0.49 -0.5
627,388 - CCNA_00595 0.49 +0.3
627,388 - CCNA_00595 0.49 -0.4
627,388 - CCNA_00595 0.49 -0.6
627,388 - CCNA_00595 0.49 +0.3
627,388 - CCNA_00595 0.49 -1.9
627,526 + CCNA_00595 0.63 -1.1
627,534 - CCNA_00595 0.64 +0.6
627,534 - CCNA_00595 0.64 -0.3
627,546 - CCNA_00595 0.65 -0.2
627,550 + CCNA_00595 0.66 -0.8
627,551 + CCNA_00595 0.66 -1.3
627,558 - CCNA_00595 0.67 -0.9
627,558 - CCNA_00595 0.67 -0.1
627,558 - CCNA_00595 0.67 +0.1
627,565 + CCNA_00595 0.67 -0.0
627,585 - CCNA_00595 0.69 -0.8
627,598 + CCNA_00595 0.71 +0.3
627,627 - CCNA_00595 0.74 +1.0
627,672 + CCNA_00595 0.78 -1.0
627,680 - CCNA_00595 0.79 -1.1
627,683 + CCNA_00595 0.79 +0.3
627,729 + CCNA_00595 0.84 +1.3
627,759 - CCNA_00595 0.87 +0.1
627,777 + CCNA_00595 0.89 -0.2
627,817 - +0.1
627,833 + -2.9
627,833 + +0.1
627,863 - -0.4
627,867 - +0.1
627,867 - +0.0
627,868 + -0.4
627,875 + +0.7
627,876 - -0.8
627,876 - +0.3
627,878 + -1.0
627,899 - CCNA_00596 0.10 -0.6
627,903 + CCNA_00596 0.11 +0.0
627,904 + CCNA_00596 0.11 +0.2
627,912 + CCNA_00596 0.13 -1.2
627,920 - CCNA_00596 0.14 +0.3
627,920 - CCNA_00596 0.14 +0.2
627,920 - CCNA_00596 0.14 -0.7
628,006 + CCNA_00596 0.31 -0.2
628,014 - CCNA_00596 0.32 +0.5
628,014 - CCNA_00596 0.32 +0.5
628,016 + CCNA_00596 0.33 +0.3
628,016 + CCNA_00596 0.33 -0.3
628,024 - CCNA_00596 0.34 +0.6
628,030 - CCNA_00596 0.35 -0.2
628,063 + CCNA_00596 0.42 +1.5
628,068 + CCNA_00596 0.43 -1.9
628,068 + CCNA_00596 0.43 -1.3
628,076 + CCNA_00596 0.44 +0.1
628,084 - CCNA_00596 0.46 -0.4
628,084 - CCNA_00596 0.46 -0.9
628,102 - CCNA_00596 0.49 +1.2
628,112 - CCNA_00596 0.51 -0.4
628,129 + CCNA_00596 0.55 -1.9
628,129 + CCNA_00596 0.55 -0.5
628,177 + CCNA_00596 0.64 -0.0
628,184 + CCNA_00596 0.65 +0.6
628,185 - CCNA_00596 0.65 -0.2
628,187 + CCNA_00596 0.66 +0.5
628,192 + CCNA_00596 0.67 -0.3
628,205 - CCNA_00596 0.69 -0.4
628,259 - CCNA_00596 0.80 +0.6
628,267 - CCNA_00596 0.81 -0.9
628,280 + CCNA_00596 0.84 -1.5
628,288 - CCNA_00596 0.85 +0.1
628,290 + CCNA_00596 0.86 -0.9
628,338 - +0.2
628,379 + -1.5
628,390 + -0.0
628,393 - -0.7
628,398 - +1.2
628,407 + -1.0
628,415 - -0.5
628,439 - -0.3
628,439 - -0.8
628,439 - +0.1
628,451 + -0.9
628,451 + -0.9
628,451 + +0.2
628,454 - -0.2
628,459 - -0.1
628,459 - -0.5
628,473 - -0.3
628,476 + +0.6
628,476 + -1.2
628,476 + -0.1
628,476 + -1.3
628,476 + -0.4
628,484 - -0.6
628,498 - -1.0
628,503 + -0.2
628,503 + +1.2
628,503 + -1.3
628,511 + -0.1
628,519 + +0.6
628,528 - -0.8
628,528 - -1.0
628,534 - -0.7
628,534 - +0.8
628,534 - +1.6
628,557 + -1.4
628,600 + +0.2
628,608 - -2.3
628,652 + +0.2
628,672 - -0.1
628,679 - -0.8
628,684 - -1.0
628,690 - -0.6
628,726 - -0.4
628,750 - -1.1
628,814 + -0.5
628,827 - +0.5
628,844 + CCNA_00597 0.10 -0.5
628,878 - CCNA_00597 0.11 -1.0
628,889 - CCNA_00597 0.12 -0.1
628,915 - CCNA_00597 0.12 +1.0
628,947 + CCNA_00597 0.13 -0.2
628,950 + CCNA_00597 0.14 -0.2
628,966 - CCNA_00597 0.14 -0.1
628,984 - CCNA_00597 0.15 -0.1
629,014 - CCNA_00597 0.16 -1.7
629,014 - CCNA_00597 0.16 -0.5
629,016 - CCNA_00597 0.16 -0.5
629,016 - CCNA_00597 0.16 -0.9
629,055 - CCNA_00597 0.17 -0.2
629,091 - CCNA_00597 0.18 -0.1
629,131 - CCNA_00597 0.19 +0.8
629,131 - CCNA_00597 0.19 -1.5
629,131 - CCNA_00597 0.19 -0.6
629,192 + CCNA_00597 0.21 -1.2
629,210 + CCNA_00597 0.22 -0.5
629,225 + CCNA_00597 0.22 -0.1
629,226 + CCNA_00597 0.22 +0.1
629,226 + CCNA_00597 0.22 -1.0
629,226 + CCNA_00597 0.22 +0.9
629,249 + CCNA_00597 0.23 -0.8
629,250 + CCNA_00597 0.23 -0.4
629,256 - CCNA_00597 0.23 -0.3
629,274 + CCNA_00597 0.24 +2.3
629,274 + CCNA_00597 0.24 +0.0
629,282 - CCNA_00597 0.24 -0.3
629,282 - CCNA_00597 0.24 +0.4
629,282 - CCNA_00597 0.24 -0.4
629,282 - CCNA_00597 0.24 -1.1
629,292 - CCNA_00597 0.24 -0.5
629,342 + CCNA_00597 0.26 -0.2
629,342 + CCNA_00597 0.26 -0.7

Or see this region's nucleotide sequence