Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00473

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00472 and CCNA_00473 are separated by 104 nucleotidesCCNA_00473 and CCNA_00474 overlap by 1 nucleotides CCNA_00472: CCNA_00472 - GDP-mannose 4,6 dehydratase, at 487,093 to 488,169 _00472 CCNA_00473: CCNA_00473 - hypothetical protein, at 488,274 to 488,768 _00473 CCNA_00474: CCNA_00474 - DNA relaxase/conjugal transfer nickase-helicase trwC, at 488,768 to 491,578 _00474 Position (kb) 488 489Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 487.309 kb on - strand, within CCNA_00472at 487.323 kb on + strand, within CCNA_00472at 487.407 kb on - strand, within CCNA_00472at 487.407 kb on - strand, within CCNA_00472at 487.442 kb on - strand, within CCNA_00472at 487.495 kb on - strand, within CCNA_00472at 487.495 kb on - strand, within CCNA_00472at 487.503 kb on + strand, within CCNA_00472at 487.510 kb on - strand, within CCNA_00472at 487.513 kb on + strand, within CCNA_00472at 487.516 kb on - strand, within CCNA_00472at 487.523 kb on - strand, within CCNA_00472at 487.528 kb on + strand, within CCNA_00472at 487.561 kb on - strand, within CCNA_00472at 487.603 kb on - strand, within CCNA_00472at 487.635 kb on - strand, within CCNA_00472at 487.653 kb on + strand, within CCNA_00472at 487.663 kb on - strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.682 kb on + strand, within CCNA_00472at 487.683 kb on + strand, within CCNA_00472at 487.715 kb on - strand, within CCNA_00472at 487.728 kb on + strand, within CCNA_00472at 487.729 kb on + strand, within CCNA_00472at 487.739 kb on + strand, within CCNA_00472at 487.739 kb on + strand, within CCNA_00472at 487.739 kb on + strand, within CCNA_00472at 487.747 kb on - strand, within CCNA_00472at 487.749 kb on + strand, within CCNA_00472at 487.749 kb on + strand, within CCNA_00472at 487.752 kb on - strand, within CCNA_00472at 487.765 kb on - strand, within CCNA_00472at 487.805 kb on - strand, within CCNA_00472at 487.808 kb on + strand, within CCNA_00472at 487.829 kb on + strand, within CCNA_00472at 487.837 kb on - strand, within CCNA_00472at 487.871 kb on - strand, within CCNA_00472at 487.875 kb on + strand, within CCNA_00472at 487.881 kb on - strand, within CCNA_00472at 487.893 kb on - strand, within CCNA_00472at 487.907 kb on - strand, within CCNA_00472at 487.975 kb on - strand, within CCNA_00472at 487.989 kb on + strand, within CCNA_00472at 487.997 kb on - strand, within CCNA_00472at 488.031 kb on - strand, within CCNA_00472at 488.033 kb on + strand, within CCNA_00472at 488.041 kb on - strand, within CCNA_00472at 488.041 kb on - strand, within CCNA_00472at 488.055 kb on + strand, within CCNA_00472at 488.055 kb on + strand, within CCNA_00472at 488.063 kb on - strandat 488.063 kb on - strandat 488.063 kb on - strandat 488.063 kb on - strandat 488.070 kb on + strandat 488.070 kb on + strandat 488.070 kb on + strandat 488.070 kb on + strandat 488.070 kb on + strandat 488.072 kb on + strandat 488.072 kb on + strandat 488.072 kb on + strandat 488.072 kb on + strandat 488.075 kb on - strandat 488.078 kb on + strandat 488.078 kb on - strandat 488.078 kb on - strandat 488.078 kb on - strandat 488.080 kb on - strandat 488.080 kb on - strandat 488.080 kb on - strandat 488.102 kb on - strandat 488.102 kb on - strandat 488.129 kb on + strandat 488.129 kb on + strandat 488.129 kb on + strandat 488.135 kb on - strandat 488.137 kb on - strandat 488.139 kb on + strandat 488.139 kb on + strandat 488.179 kb on + strandat 488.181 kb on - strandat 488.218 kb on + strandat 488.226 kb on - strandat 488.228 kb on + strandat 488.243 kb on - strandat 488.281 kb on - strandat 488.299 kb on + strandat 488.308 kb on - strandat 488.318 kb on - strandat 488.401 kb on + strand, within CCNA_00473at 488.401 kb on + strand, within CCNA_00473at 488.402 kb on + strand, within CCNA_00473at 488.409 kb on - strand, within CCNA_00473at 488.409 kb on - strand, within CCNA_00473at 488.409 kb on - strand, within CCNA_00473at 488.504 kb on + strand, within CCNA_00473at 488.512 kb on + strand, within CCNA_00473at 488.535 kb on - strand, within CCNA_00473at 488.609 kb on + strand, within CCNA_00473at 488.609 kb on - strand, within CCNA_00473at 488.609 kb on - strand, within CCNA_00473at 488.635 kb on - strand, within CCNA_00473at 488.682 kb on + strand, within CCNA_00473at 488.688 kb on + strand, within CCNA_00473at 488.722 kb on - strandat 488.768 kb on + strandat 488.768 kb on + strandat 488.768 kb on + strandat 488.768 kb on + strandat 488.776 kb on - strandat 488.776 kb on - strandat 488.776 kb on - strandat 488.793 kb on - strandat 488.825 kb on - strandat 488.826 kb on + strandat 488.834 kb on + strandat 488.851 kb on + strandat 488.851 kb on + strandat 488.859 kb on - strandat 488.859 kb on - strandat 488.867 kb on - strandat 488.869 kb on + strandat 488.869 kb on + strandat 488.879 kb on + strandat 488.887 kb on - strandat 488.931 kb on + strandat 488.950 kb on + strandat 488.950 kb on + strandat 488.958 kb on - strandat 488.962 kb on + strandat 488.970 kb on - strandat 489.007 kb on - strandat 489.007 kb on - strandat 489.007 kb on - strandat 489.026 kb on - strandat 489.046 kb on - strandat 489.058 kb on + strand, within CCNA_00474at 489.058 kb on + strand, within CCNA_00474at 489.062 kb on + strand, within CCNA_00474at 489.064 kb on + strand, within CCNA_00474at 489.064 kb on + strand, within CCNA_00474at 489.064 kb on + strand, within CCNA_00474at 489.070 kb on - strand, within CCNA_00474at 489.072 kb on - strand, within CCNA_00474at 489.072 kb on - strand, within CCNA_00474at 489.077 kb on + strand, within CCNA_00474at 489.098 kb on + strand, within CCNA_00474at 489.098 kb on + strand, within CCNA_00474at 489.098 kb on + strand, within CCNA_00474at 489.100 kb on + strand, within CCNA_00474at 489.106 kb on - strand, within CCNA_00474at 489.120 kb on + strand, within CCNA_00474at 489.169 kb on - strand, within CCNA_00474at 489.169 kb on - strand, within CCNA_00474at 489.174 kb on - strand, within CCNA_00474at 489.184 kb on - strand, within CCNA_00474at 489.211 kb on + strand, within CCNA_00474at 489.219 kb on - strand, within CCNA_00474at 489.234 kb on - strand, within CCNA_00474at 489.235 kb on + strand, within CCNA_00474at 489.243 kb on - strand, within CCNA_00474at 489.243 kb on - strand, within CCNA_00474at 489.248 kb on - strand, within CCNA_00474at 489.278 kb on - strand, within CCNA_00474at 489.301 kb on - strand, within CCNA_00474at 489.314 kb on + strand, within CCNA_00474at 489.322 kb on - strand, within CCNA_00474at 489.324 kb on + strand, within CCNA_00474at 489.332 kb on - strand, within CCNA_00474at 489.347 kb on - strand, within CCNA_00474at 489.365 kb on + strand, within CCNA_00474at 489.373 kb on - strand, within CCNA_00474at 489.408 kb on - strand, within CCNA_00474at 489.425 kb on - strand, within CCNA_00474at 489.431 kb on - strand, within CCNA_00474at 489.434 kb on + strand, within CCNA_00474at 489.442 kb on - strand, within CCNA_00474at 489.464 kb on + strand, within CCNA_00474at 489.474 kb on + strand, within CCNA_00474at 489.474 kb on + strand, within CCNA_00474at 489.479 kb on + strand, within CCNA_00474at 489.482 kb on - strand, within CCNA_00474at 489.482 kb on - strand, within CCNA_00474at 489.482 kb on - strand, within CCNA_00474at 489.482 kb on - strand, within CCNA_00474at 489.482 kb on - strand, within CCNA_00474at 489.512 kb on + strand, within CCNA_00474at 489.538 kb on - strand, within CCNA_00474at 489.557 kb on + strand, within CCNA_00474at 489.560 kb on - strand, within CCNA_00474at 489.560 kb on - strand, within CCNA_00474at 489.580 kb on - strand, within CCNA_00474at 489.580 kb on - strand, within CCNA_00474at 489.582 kb on + strand, within CCNA_00474at 489.582 kb on - strand, within CCNA_00474at 489.584 kb on + strand, within CCNA_00474at 489.590 kb on - strand, within CCNA_00474at 489.590 kb on - strand, within CCNA_00474at 489.590 kb on - strand, within CCNA_00474at 489.616 kb on - strand, within CCNA_00474at 489.691 kb on + strand, within CCNA_00474at 489.732 kb on + strand, within CCNA_00474at 489.732 kb on + strand, within CCNA_00474at 489.740 kb on - strand, within CCNA_00474at 489.758 kb on - strand, within CCNA_00474at 489.768 kb on + strand, within CCNA_00474at 489.768 kb on + strand, within CCNA_00474

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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487,309 - CCNA_00472 0.20 +0.3
487,323 + CCNA_00472 0.21 +0.2
487,407 - CCNA_00472 0.29 +0.8
487,407 - CCNA_00472 0.29 +0.0
487,442 - CCNA_00472 0.32 +0.1
487,495 - CCNA_00472 0.37 +0.3
487,495 - CCNA_00472 0.37 +0.6
487,503 + CCNA_00472 0.38 -0.1
487,510 - CCNA_00472 0.39 -0.3
487,513 + CCNA_00472 0.39 -2.5
487,516 - CCNA_00472 0.39 -0.0
487,523 - CCNA_00472 0.40 -1.3
487,528 + CCNA_00472 0.40 -0.8
487,561 - CCNA_00472 0.43 +0.6
487,603 - CCNA_00472 0.47 +0.2
487,635 - CCNA_00472 0.50 +0.5
487,653 + CCNA_00472 0.52 +0.2
487,663 - CCNA_00472 0.53 +0.8
487,664 + CCNA_00472 0.53 +0.4
487,664 + CCNA_00472 0.53 -0.3
487,664 + CCNA_00472 0.53 -0.2
487,664 + CCNA_00472 0.53 -0.9
487,664 + CCNA_00472 0.53 +0.3
487,664 + CCNA_00472 0.53 -0.2
487,664 + CCNA_00472 0.53 -0.3
487,672 - CCNA_00472 0.54 +1.6
487,672 - CCNA_00472 0.54 +0.1
487,672 - CCNA_00472 0.54 +0.7
487,672 - CCNA_00472 0.54 +1.9
487,682 + CCNA_00472 0.55 +1.4
487,683 + CCNA_00472 0.55 +0.5
487,715 - CCNA_00472 0.58 +0.4
487,728 + CCNA_00472 0.59 +0.4
487,729 + CCNA_00472 0.59 +1.3
487,739 + CCNA_00472 0.60 -0.9
487,739 + CCNA_00472 0.60 -0.0
487,739 + CCNA_00472 0.60 +2.6
487,747 - CCNA_00472 0.61 -0.3
487,749 + CCNA_00472 0.61 -0.8
487,749 + CCNA_00472 0.61 -0.6
487,752 - CCNA_00472 0.61 -0.1
487,765 - CCNA_00472 0.62 -0.5
487,805 - CCNA_00472 0.66 +0.5
487,808 + CCNA_00472 0.66 -1.4
487,829 + CCNA_00472 0.68 -0.7
487,837 - CCNA_00472 0.69 +0.8
487,871 - CCNA_00472 0.72 -0.3
487,875 + CCNA_00472 0.73 +1.2
487,881 - CCNA_00472 0.73 +1.0
487,893 - CCNA_00472 0.74 +1.6
487,907 - CCNA_00472 0.76 +1.1
487,975 - CCNA_00472 0.82 +1.1
487,989 + CCNA_00472 0.83 -0.3
487,997 - CCNA_00472 0.84 -1.9
488,031 - CCNA_00472 0.87 +0.6
488,033 + CCNA_00472 0.87 -0.4
488,041 - CCNA_00472 0.88 +0.1
488,041 - CCNA_00472 0.88 -0.2
488,055 + CCNA_00472 0.89 -0.3
488,055 + CCNA_00472 0.89 +0.6
488,063 - +0.4
488,063 - -0.7
488,063 - +0.0
488,063 - -0.8
488,070 + -1.0
488,070 + +0.5
488,070 + -0.8
488,070 + -0.0
488,070 + -0.4
488,072 + -1.0
488,072 + -0.1
488,072 + +0.0
488,072 + -1.8
488,075 - +0.3
488,078 + -0.5
488,078 - +0.3
488,078 - -1.0
488,078 - -0.4
488,080 - +0.2
488,080 - -0.0
488,080 - +0.3
488,102 - +0.1
488,102 - +0.1
488,129 + -0.2
488,129 + +2.2
488,129 + -0.4
488,135 - -1.1
488,137 - +0.5
488,139 + -0.2
488,139 + -0.8
488,179 + +1.4
488,181 - +0.7
488,218 + -1.3
488,226 - +0.1
488,228 + -0.2
488,243 - -0.6
488,281 - -2.0
488,299 + -0.7
488,308 - +0.0
488,318 - -0.3
488,401 + CCNA_00473 0.26 +1.0
488,401 + CCNA_00473 0.26 -1.1
488,402 + CCNA_00473 0.26 -2.9
488,409 - CCNA_00473 0.27 +0.7
488,409 - CCNA_00473 0.27 -0.1
488,409 - CCNA_00473 0.27 +2.4
488,504 + CCNA_00473 0.46 +0.5
488,512 + CCNA_00473 0.48 +0.8
488,535 - CCNA_00473 0.53 -0.7
488,609 + CCNA_00473 0.68 -0.3
488,609 - CCNA_00473 0.68 -0.3
488,609 - CCNA_00473 0.68 -0.2
488,635 - CCNA_00473 0.73 +0.2
488,682 + CCNA_00473 0.82 -0.9
488,688 + CCNA_00473 0.84 +1.5
488,722 - -1.6
488,768 + +0.6
488,768 + +0.3
488,768 + +0.8
488,768 + -0.2
488,776 - +0.6
488,776 - +0.0
488,776 - -0.0
488,793 - +0.0
488,825 - +0.7
488,826 + +0.0
488,834 + +1.6
488,851 + -0.2
488,851 + +0.3
488,859 - -0.5
488,859 - -0.1
488,867 - -0.3
488,869 + +0.5
488,869 + -0.5
488,879 + +0.6
488,887 - +0.3
488,931 + -1.1
488,950 + +1.2
488,950 + -0.3
488,958 - -0.1
488,962 + +0.6
488,970 - -0.7
489,007 - -0.4
489,007 - -0.1
489,007 - -0.0
489,026 - -1.2
489,046 - -1.1
489,058 + CCNA_00474 0.10 +0.8
489,058 + CCNA_00474 0.10 +1.4
489,062 + CCNA_00474 0.10 -1.1
489,064 + CCNA_00474 0.11 -0.5
489,064 + CCNA_00474 0.11 -0.6
489,064 + CCNA_00474 0.11 -0.8
489,070 - CCNA_00474 0.11 +0.1
489,072 - CCNA_00474 0.11 +0.0
489,072 - CCNA_00474 0.11 +0.3
489,077 + CCNA_00474 0.11 +0.1
489,098 + CCNA_00474 0.12 -1.1
489,098 + CCNA_00474 0.12 -0.9
489,098 + CCNA_00474 0.12 -0.8
489,100 + CCNA_00474 0.12 +0.4
489,106 - CCNA_00474 0.12 -2.2
489,120 + CCNA_00474 0.13 +0.2
489,169 - CCNA_00474 0.14 +0.1
489,169 - CCNA_00474 0.14 +0.2
489,174 - CCNA_00474 0.14 +0.1
489,184 - CCNA_00474 0.15 -0.7
489,211 + CCNA_00474 0.16 -0.3
489,219 - CCNA_00474 0.16 -0.8
489,234 - CCNA_00474 0.17 -0.5
489,235 + CCNA_00474 0.17 -0.1
489,243 - CCNA_00474 0.17 -0.4
489,243 - CCNA_00474 0.17 -0.6
489,248 - CCNA_00474 0.17 -1.4
489,278 - CCNA_00474 0.18 +0.4
489,301 - CCNA_00474 0.19 -0.3
489,314 + CCNA_00474 0.19 -1.6
489,322 - CCNA_00474 0.20 -1.9
489,324 + CCNA_00474 0.20 +0.1
489,332 - CCNA_00474 0.20 -0.3
489,347 - CCNA_00474 0.21 -0.2
489,365 + CCNA_00474 0.21 +0.4
489,373 - CCNA_00474 0.22 -1.4
489,408 - CCNA_00474 0.23 -0.1
489,425 - CCNA_00474 0.23 +0.3
489,431 - CCNA_00474 0.24 -0.3
489,434 + CCNA_00474 0.24 +0.3
489,442 - CCNA_00474 0.24 +0.0
489,464 + CCNA_00474 0.25 +0.4
489,474 + CCNA_00474 0.25 +0.0
489,474 + CCNA_00474 0.25 +0.2
489,479 + CCNA_00474 0.25 -0.9
489,482 - CCNA_00474 0.25 -1.6
489,482 - CCNA_00474 0.25 -0.2
489,482 - CCNA_00474 0.25 -0.4
489,482 - CCNA_00474 0.25 -0.5
489,482 - CCNA_00474 0.25 +0.2
489,512 + CCNA_00474 0.26 -0.7
489,538 - CCNA_00474 0.27 +0.4
489,557 + CCNA_00474 0.28 -0.8
489,560 - CCNA_00474 0.28 -1.0
489,560 - CCNA_00474 0.28 +1.2
489,580 - CCNA_00474 0.29 +0.9
489,580 - CCNA_00474 0.29 -0.0
489,582 + CCNA_00474 0.29 +1.5
489,582 - CCNA_00474 0.29 +0.2
489,584 + CCNA_00474 0.29 +0.4
489,590 - CCNA_00474 0.29 -0.3
489,590 - CCNA_00474 0.29 -0.1
489,590 - CCNA_00474 0.29 +0.0
489,616 - CCNA_00474 0.30 -1.1
489,691 + CCNA_00474 0.33 -0.0
489,732 + CCNA_00474 0.34 -0.2
489,732 + CCNA_00474 0.34 +0.3
489,740 - CCNA_00474 0.35 -0.7
489,758 - CCNA_00474 0.35 -1.0
489,768 + CCNA_00474 0.36 -0.7
489,768 + CCNA_00474 0.36 -0.2

Or see this region's nucleotide sequence