Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03998 and CCNA_00464 are separated by 713 nucleotides CCNA_00464 and CCNA_00465 are separated by 242 nucleotides
CCNA_03998: CCNA_03998 - GT1/WbuB-like N-acetyl-L-fucosamine transferase, at 475,532 to 476,800
_03998
CCNA_00464: CCNA_00464 - Undecaprenyl-phosphate sugar phosphotransferase-related protein, at 477,514 to 477,678
_00464
CCNA_00465: CCNA_00465 - UDP-galactopyranose mutase, at 477,921 to 479,033
_00465
Position (kb) 477
478 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 476.536 kb on + strand, within CCNA_03998 at 476.552 kb on + strand, within CCNA_03998 at 476.562 kb on + strand, within CCNA_03998 at 476.567 kb on + strand, within CCNA_03998 at 476.570 kb on - strand, within CCNA_03998 at 476.580 kb on - strand, within CCNA_03998 at 476.590 kb on + strand, within CCNA_03998 at 476.603 kb on + strand, within CCNA_03998 at 476.608 kb on + strand, within CCNA_03998 at 476.609 kb on + strand, within CCNA_03998 at 476.666 kb on + strand, within CCNA_03998 at 476.674 kb on - strand at 476.676 kb on + strand at 476.707 kb on + strand at 476.732 kb on + strand at 476.735 kb on - strand at 476.740 kb on - strand at 476.748 kb on + strand at 476.748 kb on + strand at 476.748 kb on + strand at 476.756 kb on - strand at 476.756 kb on - strand at 476.758 kb on + strand at 476.807 kb on - strand at 476.808 kb on + strand at 476.816 kb on - strand at 476.816 kb on - strand at 476.816 kb on - strand at 476.816 kb on - strand at 476.834 kb on + strand at 476.866 kb on + strand at 476.872 kb on + strand at 476.872 kb on + strand at 476.880 kb on - strand at 476.888 kb on + strand at 476.910 kb on + strand at 476.918 kb on - strand at 477.212 kb on + strand at 477.212 kb on + strand at 477.219 kb on + strand at 477.220 kb on + strand at 477.246 kb on + strand at 477.258 kb on - strand at 477.264 kb on - strand at 477.289 kb on + strand at 477.297 kb on - strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.330 kb on - strand at 477.370 kb on - strand at 477.382 kb on + strand at 477.388 kb on - strand at 477.390 kb on - strand at 477.458 kb on + strand at 477.469 kb on + strand at 477.474 kb on + strand at 477.477 kb on - strand at 477.487 kb on - strand at 477.488 kb on - strand at 477.495 kb on + strand at 477.503 kb on - strand at 477.504 kb on + strand at 477.514 kb on - strand at 477.550 kb on + strand, within CCNA_00464 at 477.551 kb on + strand, within CCNA_00464 at 477.556 kb on + strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.564 kb on - strand, within CCNA_00464 at 477.574 kb on - strand, within CCNA_00464 at 477.576 kb on + strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.619 kb on + strand, within CCNA_00464 at 477.632 kb on - strand, within CCNA_00464 at 477.673 kb on - strand at 477.684 kb on + strand at 477.684 kb on + strand at 477.692 kb on - strand at 477.729 kb on + strand at 477.827 kb on + strand at 477.827 kb on + strand at 477.827 kb on + strand at 477.827 kb on + strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.845 kb on - strand at 477.848 kb on + strand at 477.850 kb on + strand at 477.850 kb on + strand at 477.858 kb on - strand at 477.860 kb on + strand at 477.868 kb on - strand at 477.895 kb on + strand at 477.901 kb on + strand at 477.903 kb on - strand at 477.903 kb on - strand at 477.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 476,536 + CCNA_03998 0.79 -0.9 476,552 + CCNA_03998 0.80 +0.8 476,562 + CCNA_03998 0.81 +0.5 476,567 + CCNA_03998 0.82 +0.8 476,570 - CCNA_03998 0.82 -0.6 476,580 - CCNA_03998 0.83 +0.2 476,590 + CCNA_03998 0.83 +0.6 476,603 + CCNA_03998 0.84 -0.1 476,608 + CCNA_03998 0.85 +0.2 476,609 + CCNA_03998 0.85 +0.8 476,666 + CCNA_03998 0.89 +0.2 476,674 - +0.4 476,676 + -0.6 476,707 + +0.0 476,732 + +0.4 476,735 - +0.4 476,740 - -0.8 476,748 + -0.5 476,748 + -0.5 476,748 + +0.7 476,756 - -1.3 476,756 - -0.9 476,758 + +0.3 476,807 - -0.5 476,808 + +0.5 476,816 - -0.6 476,816 - -0.7 476,816 - -1.1 476,816 - +0.3 476,834 + +0.7 476,866 + -0.3 476,872 + -0.7 476,872 + +0.5 476,880 - -1.0 476,888 + +0.5 476,910 + +0.4 476,918 - -2.9 477,212 + +0.2 477,212 + -0.0 477,219 + +0.9 477,220 + -1.1 477,246 + +2.4 477,258 - -0.7 477,264 - +0.6 477,289 + -1.1 477,297 - +0.0 477,304 + +0.1 477,304 + -0.8 477,304 + +0.1 477,304 + -0.3 477,304 + -0.4 477,304 + +0.4 477,304 + +2.6 477,304 + -1.1 477,312 - -0.4 477,312 - -1.2 477,312 - -0.2 477,312 - -1.3 477,330 - -2.4 477,370 - -0.3 477,382 + +1.6 477,388 - -1.4 477,390 - -3.2 477,458 + +0.6 477,469 + +0.4 477,474 + +0.2 477,477 - -1.2 477,487 - -1.5 477,488 - -1.8 477,495 + +0.4 477,503 - -1.4 477,504 + +0.1 477,514 - -0.1 477,550 + CCNA_00464 0.22 +0.7 477,551 + CCNA_00464 0.22 +0.8 477,556 + CCNA_00464 0.25 +0.9 477,558 - CCNA_00464 0.27 -0.7 477,558 - CCNA_00464 0.27 -0.9 477,558 - CCNA_00464 0.27 +0.7 477,558 - CCNA_00464 0.27 -1.6 477,564 - CCNA_00464 0.30 -0.1 477,574 - CCNA_00464 0.36 -0.5 477,576 + CCNA_00464 0.38 +0.0 477,584 - CCNA_00464 0.42 -0.2 477,584 - CCNA_00464 0.42 -0.4 477,619 + CCNA_00464 0.64 +0.1 477,632 - CCNA_00464 0.72 -4.1 477,673 - -0.5 477,684 + +0.1 477,684 + -0.2 477,692 - -0.2 477,729 + +1.2 477,827 + +0.5 477,827 + +0.2 477,827 + -0.5 477,827 + +0.0 477,835 - -1.3 477,835 - -1.2 477,835 - -0.6 477,835 - +0.2 477,835 - -1.5 477,835 - -0.6 477,835 - -1.0 477,845 - +0.3 477,848 + +0.1 477,850 + +0.1 477,850 + -0.1 477,858 - -0.5 477,860 + +0.5 477,868 - +0.6 477,895 + +0.4 477,901 + +0.0 477,903 - -2.1 477,903 - +0.1 477,903 - -0.5
Or see this region's nucleotide sequence