Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00382 and CCNA_00383 are separated by 138 nucleotides CCNA_00383 and CCNA_00384 are separated by 86 nucleotides
CCNA_00382: CCNA_00382 - adenine-specific methyltransferase ccrM, at 398,637 to 399,713
_00382
CCNA_00383: CCNA_00383 - ribonuclease HII, at 399,852 to 400,487
_00383
CCNA_00384: CCNA_00384 - glucan endo-1,3-beta-glucosidase, at 400,574 to 401,479
_00384
Position (kb) 399
400
401 Strain fitness (log2 ratio) -2
-1
0
1 at 399.876 kb on - strand at 399.876 kb on - strand at 399.893 kb on - strand at 399.905 kb on + strand at 399.907 kb on + strand at 399.913 kb on - strand at 399.943 kb on - strand, within CCNA_00383 at 399.960 kb on - strand, within CCNA_00383 at 399.966 kb on - strand, within CCNA_00383 at 399.966 kb on - strand, within CCNA_00383 at 399.987 kb on - strand, within CCNA_00383 at 400.006 kb on + strand, within CCNA_00383 at 400.048 kb on + strand, within CCNA_00383 at 400.056 kb on - strand, within CCNA_00383 at 400.098 kb on + strand, within CCNA_00383 at 400.117 kb on + strand, within CCNA_00383 at 400.122 kb on + strand, within CCNA_00383 at 400.127 kb on + strand, within CCNA_00383 at 400.135 kb on - strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.180 kb on + strand, within CCNA_00383 at 400.181 kb on - strand, within CCNA_00383 at 400.187 kb on - strand, within CCNA_00383 at 400.187 kb on - strand, within CCNA_00383 at 400.222 kb on + strand, within CCNA_00383 at 400.222 kb on + strand, within CCNA_00383 at 400.222 kb on + strand, within CCNA_00383 at 400.230 kb on - strand, within CCNA_00383 at 400.230 kb on - strand, within CCNA_00383 at 400.259 kb on - strand, within CCNA_00383 at 400.264 kb on - strand, within CCNA_00383 at 400.282 kb on + strand, within CCNA_00383 at 400.282 kb on + strand, within CCNA_00383 at 400.296 kb on + strand, within CCNA_00383 at 400.296 kb on + strand, within CCNA_00383 at 400.304 kb on - strand, within CCNA_00383 at 400.319 kb on - strand, within CCNA_00383 at 400.319 kb on - strand, within CCNA_00383 at 400.338 kb on + strand, within CCNA_00383 at 400.338 kb on + strand, within CCNA_00383 at 400.346 kb on - strand, within CCNA_00383 at 400.346 kb on - strand, within CCNA_00383 at 400.346 kb on - strand, within CCNA_00383 at 400.353 kb on - strand, within CCNA_00383 at 400.392 kb on - strand, within CCNA_00383 at 400.425 kb on - strand at 400.447 kb on + strand at 400.495 kb on + strand at 400.495 kb on + strand at 400.495 kb on + strand at 400.495 kb on + strand at 400.495 kb on + strand at 400.503 kb on - strand at 400.503 kb on - strand at 400.558 kb on + strand at 400.577 kb on - strand at 400.580 kb on - strand at 400.593 kb on + strand at 400.610 kb on + strand at 400.647 kb on + strand at 400.672 kb on + strand, within CCNA_00384 at 400.683 kb on - strand, within CCNA_00384 at 400.694 kb on - strand, within CCNA_00384 at 400.774 kb on - strand, within CCNA_00384 at 400.781 kb on + strand, within CCNA_00384 at 400.781 kb on + strand, within CCNA_00384 at 400.781 kb on + strand, within CCNA_00384 at 400.789 kb on - strand, within CCNA_00384 at 400.789 kb on - strand, within CCNA_00384 at 400.832 kb on - strand, within CCNA_00384 at 400.835 kb on + strand, within CCNA_00384 at 400.877 kb on + strand, within CCNA_00384 at 400.896 kb on - strand, within CCNA_00384 at 400.896 kb on - strand, within CCNA_00384 at 400.897 kb on - strand, within CCNA_00384 at 400.911 kb on + strand, within CCNA_00384 at 400.942 kb on - strand, within CCNA_00384 at 400.989 kb on - strand, within CCNA_00384 at 400.992 kb on + strand, within CCNA_00384 at 401.033 kb on - strand, within CCNA_00384 at 401.052 kb on - strand, within CCNA_00384 at 401.113 kb on - strand, within CCNA_00384 at 401.113 kb on - strand, within CCNA_00384 at 401.204 kb on - strand, within CCNA_00384 at 401.204 kb on - strand, within CCNA_00384 at 401.205 kb on + strand, within CCNA_00384 at 401.222 kb on + strand, within CCNA_00384 at 401.275 kb on - strand, within CCNA_00384 at 401.285 kb on + strand, within CCNA_00384 at 401.319 kb on + strand, within CCNA_00384 at 401.322 kb on - strand, within CCNA_00384 at 401.389 kb on + strand at 401.422 kb on + strand at 401.435 kb on + strand at 401.435 kb on + strand at 401.435 kb on + strand at 401.439 kb on - strand at 401.445 kb on + strand at 401.447 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 399,876 - +0.3 399,876 - +0.1 399,893 - -0.2 399,905 + +0.2 399,907 + -0.8 399,913 - -0.1 399,943 - CCNA_00383 0.14 +0.8 399,960 - CCNA_00383 0.17 +0.1 399,966 - CCNA_00383 0.18 +0.8 399,966 - CCNA_00383 0.18 -0.2 399,987 - CCNA_00383 0.21 +0.3 400,006 + CCNA_00383 0.24 -0.4 400,048 + CCNA_00383 0.31 -0.2 400,056 - CCNA_00383 0.32 -0.8 400,098 + CCNA_00383 0.39 -0.2 400,117 + CCNA_00383 0.42 -0.0 400,122 + CCNA_00383 0.42 +0.8 400,127 + CCNA_00383 0.43 -2.1 400,135 - CCNA_00383 0.44 +1.3 400,179 + CCNA_00383 0.51 -0.4 400,179 + CCNA_00383 0.51 -0.8 400,179 + CCNA_00383 0.51 -0.7 400,179 + CCNA_00383 0.51 +0.6 400,179 + CCNA_00383 0.51 +0.8 400,179 + CCNA_00383 0.51 -0.6 400,179 + CCNA_00383 0.51 -1.1 400,180 + CCNA_00383 0.52 +0.3 400,181 - CCNA_00383 0.52 +0.3 400,187 - CCNA_00383 0.53 +0.1 400,187 - CCNA_00383 0.53 +0.1 400,222 + CCNA_00383 0.58 -0.9 400,222 + CCNA_00383 0.58 -0.0 400,222 + CCNA_00383 0.58 -1.1 400,230 - CCNA_00383 0.59 -0.0 400,230 - CCNA_00383 0.59 -0.0 400,259 - CCNA_00383 0.64 +0.4 400,264 - CCNA_00383 0.65 -0.1 400,282 + CCNA_00383 0.68 -0.1 400,282 + CCNA_00383 0.68 -1.5 400,296 + CCNA_00383 0.70 -1.4 400,296 + CCNA_00383 0.70 +0.1 400,304 - CCNA_00383 0.71 +0.7 400,319 - CCNA_00383 0.73 -0.1 400,319 - CCNA_00383 0.73 +0.6 400,338 + CCNA_00383 0.76 +0.1 400,338 + CCNA_00383 0.76 -0.0 400,346 - CCNA_00383 0.78 -0.0 400,346 - CCNA_00383 0.78 -0.0 400,346 - CCNA_00383 0.78 +0.5 400,353 - CCNA_00383 0.79 -0.3 400,392 - CCNA_00383 0.85 +0.7 400,425 - -0.4 400,447 + -1.4 400,495 + -0.4 400,495 + -0.2 400,495 + -1.1 400,495 + -0.2 400,495 + +0.5 400,503 - -0.2 400,503 - -1.0 400,558 + +0.7 400,577 - -0.9 400,580 - -1.5 400,593 + -0.0 400,610 + +0.4 400,647 + +0.4 400,672 + CCNA_00384 0.11 +0.1 400,683 - CCNA_00384 0.12 +0.4 400,694 - CCNA_00384 0.13 +0.1 400,774 - CCNA_00384 0.22 +0.6 400,781 + CCNA_00384 0.23 -0.7 400,781 + CCNA_00384 0.23 +0.1 400,781 + CCNA_00384 0.23 -0.4 400,789 - CCNA_00384 0.24 +0.5 400,789 - CCNA_00384 0.24 +0.5 400,832 - CCNA_00384 0.28 +0.0 400,835 + CCNA_00384 0.29 +0.6 400,877 + CCNA_00384 0.33 +0.9 400,896 - CCNA_00384 0.36 -0.0 400,896 - CCNA_00384 0.36 +0.3 400,897 - CCNA_00384 0.36 -0.4 400,911 + CCNA_00384 0.37 -0.0 400,942 - CCNA_00384 0.41 +1.3 400,989 - CCNA_00384 0.46 -1.6 400,992 + CCNA_00384 0.46 -0.2 401,033 - CCNA_00384 0.51 -1.3 401,052 - CCNA_00384 0.53 +0.5 401,113 - CCNA_00384 0.59 -0.5 401,113 - CCNA_00384 0.59 -1.2 401,204 - CCNA_00384 0.70 +0.2 401,204 - CCNA_00384 0.70 +0.8 401,205 + CCNA_00384 0.70 -0.1 401,222 + CCNA_00384 0.72 +0.2 401,275 - CCNA_00384 0.77 -0.8 401,285 + CCNA_00384 0.78 -0.7 401,319 + CCNA_00384 0.82 -0.1 401,322 - CCNA_00384 0.83 -0.3 401,389 + +1.1 401,422 + -0.4 401,435 + -0.4 401,435 + +1.1 401,435 + -0.4 401,439 - +0.4 401,445 + +0.8 401,447 + -0.5
Or see this region's nucleotide sequence