Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00337

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00336 and CCNA_00337 are separated by 77 nucleotidesCCNA_00337 and CCNA_00338 are separated by 173 nucleotides CCNA_00336: CCNA_00336 - lignostilbene-alpha,beta-dioxygenase, at 346,066 to 347,517 _00336 CCNA_00337: CCNA_00337 - TetR-family transcriptional regulator, at 347,595 to 348,305 _00337 CCNA_00338: CCNA_00338 - TonB-dependent receptor, at 348,479 to 350,719 _00338 Position (kb) 347 348 349Strain fitness (log2 ratio) -2 -1 0 1 2at 346.611 kb on + strand, within CCNA_00336at 346.611 kb on + strand, within CCNA_00336at 346.612 kb on - strand, within CCNA_00336at 346.617 kb on + strand, within CCNA_00336at 346.619 kb on - strand, within CCNA_00336at 346.653 kb on + strand, within CCNA_00336at 346.706 kb on - strand, within CCNA_00336at 346.718 kb on + strand, within CCNA_00336at 346.728 kb on + strand, within CCNA_00336at 346.728 kb on + strand, within CCNA_00336at 346.733 kb on + strand, within CCNA_00336at 346.734 kb on + strand, within CCNA_00336at 346.735 kb on + strand, within CCNA_00336at 346.736 kb on - strand, within CCNA_00336at 346.736 kb on - strand, within CCNA_00336at 346.741 kb on + strand, within CCNA_00336at 346.741 kb on - strand, within CCNA_00336at 346.748 kb on - strand, within CCNA_00336at 346.749 kb on - strand, within CCNA_00336at 346.779 kb on + strand, within CCNA_00336at 346.784 kb on + strand, within CCNA_00336at 346.789 kb on + strand, within CCNA_00336at 346.810 kb on + strand, within CCNA_00336at 346.817 kb on - strand, within CCNA_00336at 346.818 kb on - strand, within CCNA_00336at 346.820 kb on + strand, within CCNA_00336at 346.820 kb on + strand, within CCNA_00336at 346.822 kb on + strand, within CCNA_00336at 346.823 kb on - strand, within CCNA_00336at 346.823 kb on - strand, within CCNA_00336at 346.831 kb on + strand, within CCNA_00336at 346.831 kb on + strand, within CCNA_00336at 346.839 kb on - strand, within CCNA_00336at 346.839 kb on - strand, within CCNA_00336at 346.839 kb on - strand, within CCNA_00336at 346.880 kb on + strand, within CCNA_00336at 346.881 kb on - strand, within CCNA_00336at 346.888 kb on - strand, within CCNA_00336at 346.913 kb on - strand, within CCNA_00336at 346.970 kb on + strand, within CCNA_00336at 346.978 kb on - strand, within CCNA_00336at 347.070 kb on + strand, within CCNA_00336at 347.070 kb on + strand, within CCNA_00336at 347.078 kb on - strand, within CCNA_00336at 347.078 kb on - strand, within CCNA_00336at 347.078 kb on - strand, within CCNA_00336at 347.078 kb on - strand, within CCNA_00336at 347.114 kb on + strand, within CCNA_00336at 347.150 kb on + strand, within CCNA_00336at 347.158 kb on - strand, within CCNA_00336at 347.165 kb on + strand, within CCNA_00336at 347.170 kb on + strand, within CCNA_00336at 347.173 kb on - strand, within CCNA_00336at 347.178 kb on - strand, within CCNA_00336at 347.196 kb on + strand, within CCNA_00336at 347.196 kb on + strand, within CCNA_00336at 347.225 kb on + strand, within CCNA_00336at 347.265 kb on - strand, within CCNA_00336at 347.287 kb on + strand, within CCNA_00336at 347.327 kb on - strand, within CCNA_00336at 347.366 kb on + strand, within CCNA_00336at 347.373 kb on + strandat 347.410 kb on + strandat 347.468 kb on + strandat 347.500 kb on + strandat 347.508 kb on - strandat 347.536 kb on - strandat 347.549 kb on - strandat 347.554 kb on - strandat 347.589 kb on + strandat 347.612 kb on - strandat 347.655 kb on + strandat 347.666 kb on + strand, within CCNA_00337at 347.697 kb on - strand, within CCNA_00337at 347.724 kb on + strand, within CCNA_00337at 347.762 kb on - strand, within CCNA_00337at 347.762 kb on - strand, within CCNA_00337at 347.766 kb on + strand, within CCNA_00337at 347.769 kb on - strand, within CCNA_00337at 347.774 kb on - strand, within CCNA_00337at 347.804 kb on + strand, within CCNA_00337at 347.861 kb on + strand, within CCNA_00337at 347.866 kb on + strand, within CCNA_00337at 347.870 kb on - strand, within CCNA_00337at 347.887 kb on - strand, within CCNA_00337at 347.996 kb on + strand, within CCNA_00337at 347.996 kb on + strand, within CCNA_00337at 348.005 kb on + strand, within CCNA_00337at 348.012 kb on + strand, within CCNA_00337at 348.035 kb on - strand, within CCNA_00337at 348.060 kb on - strand, within CCNA_00337at 348.063 kb on - strand, within CCNA_00337at 348.074 kb on + strand, within CCNA_00337at 348.074 kb on + strand, within CCNA_00337at 348.074 kb on + strand, within CCNA_00337at 348.075 kb on + strand, within CCNA_00337at 348.082 kb on - strand, within CCNA_00337at 348.082 kb on - strand, within CCNA_00337at 348.096 kb on - strand, within CCNA_00337at 348.111 kb on + strand, within CCNA_00337at 348.121 kb on - strand, within CCNA_00337at 348.193 kb on - strand, within CCNA_00337at 348.256 kb on + strandat 348.281 kb on + strandat 348.281 kb on + strandat 348.286 kb on - strandat 348.289 kb on - strandat 348.289 kb on - strandat 348.459 kb on + strandat 348.462 kb on + strandat 348.467 kb on - strandat 348.467 kb on - strandat 348.467 kb on - strandat 348.470 kb on - strandat 348.475 kb on + strandat 348.477 kb on - strandat 348.477 kb on - strandat 348.518 kb on + strandat 348.531 kb on - strandat 348.532 kb on + strandat 348.548 kb on + strandat 348.564 kb on - strandat 348.591 kb on + strandat 348.591 kb on + strandat 348.633 kb on - strandat 348.663 kb on - strandat 348.663 kb on - strandat 348.694 kb on + strandat 348.695 kb on - strandat 348.696 kb on + strandat 348.706 kb on + strand, within CCNA_00338at 348.716 kb on + strand, within CCNA_00338at 348.716 kb on + strand, within CCNA_00338at 348.716 kb on + strand, within CCNA_00338at 348.724 kb on - strand, within CCNA_00338at 348.758 kb on + strand, within CCNA_00338at 348.763 kb on + strand, within CCNA_00338at 348.775 kb on - strand, within CCNA_00338at 348.776 kb on - strand, within CCNA_00338at 348.785 kb on + strand, within CCNA_00338at 348.849 kb on - strand, within CCNA_00338at 348.850 kb on - strand, within CCNA_00338at 348.869 kb on + strand, within CCNA_00338at 348.869 kb on + strand, within CCNA_00338at 348.877 kb on - strand, within CCNA_00338at 348.877 kb on - strand, within CCNA_00338at 348.895 kb on + strand, within CCNA_00338at 348.895 kb on + strand, within CCNA_00338at 348.912 kb on + strand, within CCNA_00338at 348.912 kb on - strand, within CCNA_00338at 348.919 kb on + strand, within CCNA_00338at 348.922 kb on - strand, within CCNA_00338at 348.926 kb on + strand, within CCNA_00338at 348.934 kb on - strand, within CCNA_00338at 349.008 kb on - strand, within CCNA_00338at 349.018 kb on - strand, within CCNA_00338at 349.020 kb on + strand, within CCNA_00338at 349.028 kb on - strand, within CCNA_00338at 349.028 kb on - strand, within CCNA_00338at 349.028 kb on - strand, within CCNA_00338at 349.033 kb on - strand, within CCNA_00338at 349.094 kb on + strand, within CCNA_00338at 349.099 kb on + strand, within CCNA_00338at 349.099 kb on + strand, within CCNA_00338at 349.099 kb on + strand, within CCNA_00338at 349.105 kb on - strand, within CCNA_00338at 349.107 kb on - strand, within CCNA_00338at 349.107 kb on - strand, within CCNA_00338at 349.119 kb on + strand, within CCNA_00338at 349.124 kb on + strand, within CCNA_00338at 349.127 kb on - strand, within CCNA_00338at 349.147 kb on + strand, within CCNA_00338at 349.150 kb on - strand, within CCNA_00338at 349.158 kb on - strand, within CCNA_00338at 349.168 kb on - strand, within CCNA_00338at 349.197 kb on + strand, within CCNA_00338at 349.220 kb on + strand, within CCNA_00338at 349.224 kb on + strand, within CCNA_00338at 349.242 kb on + strand, within CCNA_00338at 349.250 kb on - strand, within CCNA_00338at 349.277 kb on + strand, within CCNA_00338at 349.285 kb on - strand, within CCNA_00338at 349.298 kb on + strand, within CCNA_00338at 349.298 kb on + strand, within CCNA_00338at 349.298 kb on + strand, within CCNA_00338

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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346,611 + CCNA_00336 0.38 -0.1
346,611 + CCNA_00336 0.38 -0.6
346,612 - CCNA_00336 0.38 +0.2
346,617 + CCNA_00336 0.38 -0.3
346,619 - CCNA_00336 0.38 +0.1
346,653 + CCNA_00336 0.40 -0.8
346,706 - CCNA_00336 0.44 -0.8
346,718 + CCNA_00336 0.45 -1.1
346,728 + CCNA_00336 0.46 -1.3
346,728 + CCNA_00336 0.46 -0.4
346,733 + CCNA_00336 0.46 -0.2
346,734 + CCNA_00336 0.46 +0.2
346,735 + CCNA_00336 0.46 -0.6
346,736 - CCNA_00336 0.46 -0.2
346,736 - CCNA_00336 0.46 -0.6
346,741 + CCNA_00336 0.46 +1.2
346,741 - CCNA_00336 0.46 -0.2
346,748 - CCNA_00336 0.47 -0.7
346,749 - CCNA_00336 0.47 -2.2
346,779 + CCNA_00336 0.49 -0.5
346,784 + CCNA_00336 0.49 +0.2
346,789 + CCNA_00336 0.50 -1.0
346,810 + CCNA_00336 0.51 -0.2
346,817 - CCNA_00336 0.52 +0.1
346,818 - CCNA_00336 0.52 -1.0
346,820 + CCNA_00336 0.52 -1.3
346,820 + CCNA_00336 0.52 +2.1
346,822 + CCNA_00336 0.52 +0.9
346,823 - CCNA_00336 0.52 +0.3
346,823 - CCNA_00336 0.52 -0.6
346,831 + CCNA_00336 0.53 -1.1
346,831 + CCNA_00336 0.53 -0.3
346,839 - CCNA_00336 0.53 -0.2
346,839 - CCNA_00336 0.53 -0.0
346,839 - CCNA_00336 0.53 -0.7
346,880 + CCNA_00336 0.56 +1.6
346,881 - CCNA_00336 0.56 +0.6
346,888 - CCNA_00336 0.57 +0.3
346,913 - CCNA_00336 0.58 +0.1
346,970 + CCNA_00336 0.62 +0.9
346,978 - CCNA_00336 0.63 -0.0
347,070 + CCNA_00336 0.69 -0.7
347,070 + CCNA_00336 0.69 -0.8
347,078 - CCNA_00336 0.70 -1.9
347,078 - CCNA_00336 0.70 -1.2
347,078 - CCNA_00336 0.70 -0.4
347,078 - CCNA_00336 0.70 -0.1
347,114 + CCNA_00336 0.72 -0.3
347,150 + CCNA_00336 0.75 -1.1
347,158 - CCNA_00336 0.75 -0.3
347,165 + CCNA_00336 0.76 -0.0
347,170 + CCNA_00336 0.76 -1.3
347,173 - CCNA_00336 0.76 -0.7
347,178 - CCNA_00336 0.77 -0.1
347,196 + CCNA_00336 0.78 +0.2
347,196 + CCNA_00336 0.78 +0.7
347,225 + CCNA_00336 0.80 +2.6
347,265 - CCNA_00336 0.83 -0.7
347,287 + CCNA_00336 0.84 -0.4
347,327 - CCNA_00336 0.87 -0.6
347,366 + CCNA_00336 0.90 -0.8
347,373 + -0.3
347,410 + +0.5
347,468 + -0.5
347,500 + +0.6
347,508 - +0.3
347,536 - -0.3
347,549 - -1.0
347,554 - +0.2
347,589 + +0.2
347,612 - -0.4
347,655 + +0.4
347,666 + CCNA_00337 0.10 +0.9
347,697 - CCNA_00337 0.14 -0.5
347,724 + CCNA_00337 0.18 +0.3
347,762 - CCNA_00337 0.23 -0.4
347,762 - CCNA_00337 0.23 +0.3
347,766 + CCNA_00337 0.24 -0.0
347,769 - CCNA_00337 0.24 +0.1
347,774 - CCNA_00337 0.25 +0.2
347,804 + CCNA_00337 0.29 +1.0
347,861 + CCNA_00337 0.37 -0.4
347,866 + CCNA_00337 0.38 -0.6
347,870 - CCNA_00337 0.39 -1.4
347,887 - CCNA_00337 0.41 +0.6
347,996 + CCNA_00337 0.56 -0.6
347,996 + CCNA_00337 0.56 +0.0
348,005 + CCNA_00337 0.58 -0.4
348,012 + CCNA_00337 0.59 +0.7
348,035 - CCNA_00337 0.62 -0.1
348,060 - CCNA_00337 0.65 +0.8
348,063 - CCNA_00337 0.66 -0.4
348,074 + CCNA_00337 0.67 +0.9
348,074 + CCNA_00337 0.67 +0.0
348,074 + CCNA_00337 0.67 -1.9
348,075 + CCNA_00337 0.68 +0.8
348,082 - CCNA_00337 0.68 -0.5
348,082 - CCNA_00337 0.68 -0.3
348,096 - CCNA_00337 0.70 -0.4
348,111 + CCNA_00337 0.73 -1.2
348,121 - CCNA_00337 0.74 +1.1
348,193 - CCNA_00337 0.84 -0.6
348,256 + +0.4
348,281 + +0.5
348,281 + +0.9
348,286 - -2.0
348,289 - +0.9
348,289 - +0.5
348,459 + -0.3
348,462 + +1.0
348,467 - -0.4
348,467 - -0.6
348,467 - -1.1
348,470 - -0.0
348,475 + -0.1
348,477 - -0.6
348,477 - +0.4
348,518 + +0.2
348,531 - +0.2
348,532 + -0.3
348,548 + +1.9
348,564 - +0.3
348,591 + +0.4
348,591 + +0.7
348,633 - +0.8
348,663 - -1.9
348,663 - -0.1
348,694 + +0.8
348,695 - +0.5
348,696 + -0.3
348,706 + CCNA_00338 0.10 -0.7
348,716 + CCNA_00338 0.11 -0.3
348,716 + CCNA_00338 0.11 +0.7
348,716 + CCNA_00338 0.11 -0.1
348,724 - CCNA_00338 0.11 -0.0
348,758 + CCNA_00338 0.12 +0.1
348,763 + CCNA_00338 0.13 -0.3
348,775 - CCNA_00338 0.13 -0.4
348,776 - CCNA_00338 0.13 +0.3
348,785 + CCNA_00338 0.14 +0.1
348,849 - CCNA_00338 0.17 -1.5
348,850 - CCNA_00338 0.17 -0.1
348,869 + CCNA_00338 0.17 -0.1
348,869 + CCNA_00338 0.17 -0.3
348,877 - CCNA_00338 0.18 -0.4
348,877 - CCNA_00338 0.18 -0.5
348,895 + CCNA_00338 0.19 +0.1
348,895 + CCNA_00338 0.19 +0.6
348,912 + CCNA_00338 0.19 +0.1
348,912 - CCNA_00338 0.19 -0.8
348,919 + CCNA_00338 0.20 -0.1
348,922 - CCNA_00338 0.20 -1.1
348,926 + CCNA_00338 0.20 -0.2
348,934 - CCNA_00338 0.20 -0.6
349,008 - CCNA_00338 0.24 -0.3
349,018 - CCNA_00338 0.24 +0.8
349,020 + CCNA_00338 0.24 -1.0
349,028 - CCNA_00338 0.24 -0.3
349,028 - CCNA_00338 0.24 -0.5
349,028 - CCNA_00338 0.24 +0.6
349,033 - CCNA_00338 0.25 +1.7
349,094 + CCNA_00338 0.27 -0.0
349,099 + CCNA_00338 0.28 +0.7
349,099 + CCNA_00338 0.28 -0.3
349,099 + CCNA_00338 0.28 +0.1
349,105 - CCNA_00338 0.28 -1.9
349,107 - CCNA_00338 0.28 -0.5
349,107 - CCNA_00338 0.28 -0.1
349,119 + CCNA_00338 0.29 +0.1
349,124 + CCNA_00338 0.29 +0.6
349,127 - CCNA_00338 0.29 +0.7
349,147 + CCNA_00338 0.30 +0.5
349,150 - CCNA_00338 0.30 -0.9
349,158 - CCNA_00338 0.30 -0.2
349,168 - CCNA_00338 0.31 +0.2
349,197 + CCNA_00338 0.32 -1.0
349,220 + CCNA_00338 0.33 +0.2
349,224 + CCNA_00338 0.33 +0.3
349,242 + CCNA_00338 0.34 +0.9
349,250 - CCNA_00338 0.34 -0.0
349,277 + CCNA_00338 0.36 -0.1
349,285 - CCNA_00338 0.36 -0.9
349,298 + CCNA_00338 0.37 -0.1
349,298 + CCNA_00338 0.37 -0.2
349,298 + CCNA_00338 0.37 -0.7

Or see this region's nucleotide sequence