Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00322

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00320 and CCNA_00321 are separated by 30 nucleotidesCCNA_00321 and CCNA_00322 are separated by 203 nucleotidesCCNA_00322 and CCNA_00323 are separated by 42 nucleotides CCNA_00320: CCNA_00320 - LSU ribosomal protein L27P, at 334,940 to 335,209 _00320 CCNA_00321: CCNA_00321 - LSU ribosomal protein L21P, at 335,240 to 335,755 _00321 CCNA_00322: CCNA_00322 - hypothetical protein, at 335,959 to 336,588 _00322 CCNA_00323: CCNA_00323 - low-affinity zinc transport protein, at 336,631 to 337,728 _00323 Position (kb) 335 336 337Strain fitness (log2 ratio) -2 -1 0 1 2at 335.239 kb on - strandat 335.239 kb on - strandat 335.245 kb on - strandat 335.245 kb on - strandat 335.333 kb on - strand, within CCNA_00321at 335.907 kb on - strandat 335.956 kb on + strandat 335.970 kb on - strandat 335.985 kb on - strandat 336.004 kb on - strandat 336.008 kb on + strandat 336.054 kb on + strand, within CCNA_00322at 336.062 kb on - strand, within CCNA_00322at 336.062 kb on - strand, within CCNA_00322at 336.101 kb on - strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.146 kb on + strand, within CCNA_00322at 336.148 kb on - strand, within CCNA_00322at 336.148 kb on - strand, within CCNA_00322at 336.148 kb on - strand, within CCNA_00322at 336.148 kb on - strand, within CCNA_00322at 336.148 kb on - strand, within CCNA_00322at 336.159 kb on - strand, within CCNA_00322at 336.165 kb on - strand, within CCNA_00322at 336.242 kb on + strand, within CCNA_00322at 336.250 kb on - strand, within CCNA_00322at 336.261 kb on + strand, within CCNA_00322at 336.264 kb on + strand, within CCNA_00322at 336.266 kb on + strand, within CCNA_00322at 336.294 kb on + strand, within CCNA_00322at 336.346 kb on - strand, within CCNA_00322at 336.364 kb on + strand, within CCNA_00322at 336.391 kb on + strand, within CCNA_00322at 336.394 kb on - strand, within CCNA_00322at 336.422 kb on + strand, within CCNA_00322at 336.430 kb on - strand, within CCNA_00322at 336.451 kb on + strand, within CCNA_00322at 336.454 kb on + strand, within CCNA_00322at 336.478 kb on - strand, within CCNA_00322at 336.480 kb on + strand, within CCNA_00322at 336.504 kb on + strand, within CCNA_00322at 336.504 kb on + strand, within CCNA_00322at 336.509 kb on + strand, within CCNA_00322at 336.517 kb on - strand, within CCNA_00322at 336.537 kb on - strandat 336.567 kb on - strandat 336.583 kb on + strandat 336.591 kb on - strandat 336.615 kb on + strandat 336.616 kb on - strandat 336.623 kb on - strandat 336.633 kb on + strandat 336.633 kb on + strandat 336.636 kb on - strandat 336.641 kb on - strandat 336.641 kb on - strandat 336.643 kb on + strandat 336.643 kb on + strandat 336.643 kb on + strandat 336.651 kb on - strandat 336.651 kb on - strandat 336.651 kb on - strandat 336.678 kb on - strandat 336.711 kb on + strandat 336.725 kb on + strandat 336.744 kb on + strand, within CCNA_00323at 336.744 kb on + strand, within CCNA_00323at 336.744 kb on + strand, within CCNA_00323at 336.752 kb on - strand, within CCNA_00323at 336.752 kb on - strand, within CCNA_00323at 336.785 kb on - strand, within CCNA_00323at 336.828 kb on - strand, within CCNA_00323at 336.846 kb on + strand, within CCNA_00323at 336.846 kb on + strand, within CCNA_00323at 336.846 kb on + strand, within CCNA_00323at 336.846 kb on + strand, within CCNA_00323at 336.854 kb on - strand, within CCNA_00323at 336.854 kb on - strand, within CCNA_00323at 336.870 kb on + strand, within CCNA_00323at 336.880 kb on + strand, within CCNA_00323at 336.880 kb on + strand, within CCNA_00323at 336.903 kb on + strand, within CCNA_00323at 336.945 kb on - strand, within CCNA_00323at 336.969 kb on - strand, within CCNA_00323at 337.001 kb on - strand, within CCNA_00323at 337.022 kb on - strand, within CCNA_00323at 337.022 kb on - strand, within CCNA_00323at 337.105 kb on + strand, within CCNA_00323at 337.105 kb on + strand, within CCNA_00323at 337.118 kb on - strand, within CCNA_00323at 337.118 kb on - strand, within CCNA_00323at 337.118 kb on - strand, within CCNA_00323at 337.128 kb on - strand, within CCNA_00323at 337.150 kb on + strand, within CCNA_00323at 337.267 kb on + strand, within CCNA_00323at 337.268 kb on + strand, within CCNA_00323at 337.273 kb on + strand, within CCNA_00323at 337.273 kb on + strand, within CCNA_00323at 337.279 kb on + strand, within CCNA_00323at 337.283 kb on + strand, within CCNA_00323at 337.309 kb on + strand, within CCNA_00323at 337.369 kb on + strand, within CCNA_00323at 337.421 kb on - strand, within CCNA_00323at 337.474 kb on - strand, within CCNA_00323at 337.553 kb on - strand, within CCNA_00323

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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335,239 - -0.4
335,239 - -0.0
335,245 - -1.7
335,245 - -0.3
335,333 - CCNA_00321 0.18 +0.1
335,907 - -0.2
335,956 + +0.1
335,970 - +0.2
335,985 - +0.6
336,004 - -1.1
336,008 + -0.4
336,054 + CCNA_00322 0.15 +0.3
336,062 - CCNA_00322 0.16 +1.3
336,062 - CCNA_00322 0.16 -1.1
336,101 - CCNA_00322 0.23 +0.4
336,140 + CCNA_00322 0.29 +0.2
336,140 + CCNA_00322 0.29 -0.7
336,140 + CCNA_00322 0.29 -0.2
336,140 + CCNA_00322 0.29 -0.4
336,140 + CCNA_00322 0.29 -0.4
336,140 + CCNA_00322 0.29 +0.3
336,140 + CCNA_00322 0.29 -0.0
336,146 + CCNA_00322 0.30 +0.3
336,148 - CCNA_00322 0.30 -0.7
336,148 - CCNA_00322 0.30 -0.4
336,148 - CCNA_00322 0.30 +0.1
336,148 - CCNA_00322 0.30 -1.5
336,148 - CCNA_00322 0.30 -0.1
336,159 - CCNA_00322 0.32 -1.3
336,165 - CCNA_00322 0.33 +0.1
336,242 + CCNA_00322 0.45 -0.2
336,250 - CCNA_00322 0.46 -1.0
336,261 + CCNA_00322 0.48 +0.1
336,264 + CCNA_00322 0.48 +0.6
336,266 + CCNA_00322 0.49 -0.2
336,294 + CCNA_00322 0.53 +0.3
336,346 - CCNA_00322 0.61 +0.8
336,364 + CCNA_00322 0.64 +0.9
336,391 + CCNA_00322 0.69 +0.8
336,394 - CCNA_00322 0.69 +0.3
336,422 + CCNA_00322 0.73 +0.6
336,430 - CCNA_00322 0.75 -0.9
336,451 + CCNA_00322 0.78 +0.6
336,454 + CCNA_00322 0.79 -0.1
336,478 - CCNA_00322 0.82 +1.4
336,480 + CCNA_00322 0.83 -0.8
336,504 + CCNA_00322 0.87 +0.2
336,504 + CCNA_00322 0.87 +0.8
336,509 + CCNA_00322 0.87 -0.6
336,517 - CCNA_00322 0.89 -0.5
336,537 - +0.1
336,567 - -1.0
336,583 + -0.4
336,591 - +0.3
336,615 + +0.7
336,616 - -1.0
336,623 - +0.0
336,633 + +2.2
336,633 + -0.0
336,636 - +0.3
336,641 - +0.0
336,641 - -0.3
336,643 + -0.0
336,643 + +0.3
336,643 + +0.1
336,651 - -1.7
336,651 - -0.2
336,651 - +1.5
336,678 - -2.5
336,711 + -0.4
336,725 + -0.4
336,744 + CCNA_00323 0.10 +0.3
336,744 + CCNA_00323 0.10 +1.8
336,744 + CCNA_00323 0.10 -1.2
336,752 - CCNA_00323 0.11 -0.5
336,752 - CCNA_00323 0.11 -0.6
336,785 - CCNA_00323 0.14 -0.5
336,828 - CCNA_00323 0.18 -0.9
336,846 + CCNA_00323 0.20 -0.0
336,846 + CCNA_00323 0.20 +0.2
336,846 + CCNA_00323 0.20 +0.1
336,846 + CCNA_00323 0.20 +0.7
336,854 - CCNA_00323 0.20 +1.3
336,854 - CCNA_00323 0.20 -1.1
336,870 + CCNA_00323 0.22 +0.3
336,880 + CCNA_00323 0.23 -0.5
336,880 + CCNA_00323 0.23 -0.1
336,903 + CCNA_00323 0.25 -0.4
336,945 - CCNA_00323 0.29 -0.6
336,969 - CCNA_00323 0.31 +1.0
337,001 - CCNA_00323 0.34 -1.3
337,022 - CCNA_00323 0.36 -1.0
337,022 - CCNA_00323 0.36 -0.4
337,105 + CCNA_00323 0.43 +0.3
337,105 + CCNA_00323 0.43 +0.2
337,118 - CCNA_00323 0.44 -0.4
337,118 - CCNA_00323 0.44 +0.1
337,118 - CCNA_00323 0.44 +0.5
337,128 - CCNA_00323 0.45 -0.4
337,150 + CCNA_00323 0.47 +0.4
337,267 + CCNA_00323 0.58 -0.7
337,268 + CCNA_00323 0.58 +1.1
337,273 + CCNA_00323 0.58 +0.3
337,273 + CCNA_00323 0.58 -0.2
337,279 + CCNA_00323 0.59 -0.8
337,283 + CCNA_00323 0.59 +1.4
337,309 + CCNA_00323 0.62 -0.2
337,369 + CCNA_00323 0.67 +0.4
337,421 - CCNA_00323 0.72 -0.2
337,474 - CCNA_00323 0.77 -0.0
337,553 - CCNA_00323 0.84 +0.6

Or see this region's nucleotide sequence