Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00259

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00257 and CCNA_00259 are separated by 342 nucleotidesCCNA_00259 and CCNA_00260 are separated by 251 nucleotides CCNA_00257: CCNA_00257 - adenosylhomocysteinase, at 270,176 to 271,567 _00257 CCNA_00259: CCNA_00259 - hypothetical protein, at 271,910 to 272,620 _00259 CCNA_00260: CCNA_00260 - glutathione S-transferase, at 272,872 to 273,558 _00260 Position (kb) 271 272 273Strain fitness (log2 ratio) -2 -1 0 1 2at 270.973 kb on + strand, within CCNA_00257at 270.977 kb on - strand, within CCNA_00257at 270.991 kb on - strand, within CCNA_00257at 271.011 kb on - strand, within CCNA_00257at 271.024 kb on - strand, within CCNA_00257at 271.115 kb on + strand, within CCNA_00257at 271.123 kb on - strand, within CCNA_00257at 271.123 kb on - strand, within CCNA_00257at 271.160 kb on + strand, within CCNA_00257at 271.168 kb on - strand, within CCNA_00257at 271.168 kb on - strand, within CCNA_00257at 271.173 kb on - strand, within CCNA_00257at 271.200 kb on + strand, within CCNA_00257at 271.247 kb on + strand, within CCNA_00257at 271.288 kb on - strand, within CCNA_00257at 271.319 kb on + strand, within CCNA_00257at 271.322 kb on - strand, within CCNA_00257at 271.322 kb on - strand, within CCNA_00257at 271.327 kb on - strand, within CCNA_00257at 271.327 kb on - strand, within CCNA_00257at 271.390 kb on + strand, within CCNA_00257at 271.407 kb on + strand, within CCNA_00257at 271.586 kb on + strandat 271.610 kb on - strandat 271.650 kb on + strandat 271.689 kb on + strandat 271.718 kb on + strandat 271.722 kb on + strandat 271.738 kb on - strandat 271.741 kb on - strandat 271.741 kb on - strandat 271.759 kb on - strandat 271.761 kb on + strandat 271.766 kb on + strandat 271.769 kb on - strandat 271.769 kb on - strandat 271.769 kb on - strandat 271.769 kb on - strandat 271.774 kb on - strandat 271.809 kb on + strandat 271.809 kb on + strandat 271.819 kb on - strandat 271.824 kb on + strandat 271.834 kb on + strandat 271.839 kb on + strandat 271.839 kb on + strandat 271.839 kb on + strandat 271.839 kb on + strandat 271.842 kb on - strandat 271.842 kb on - strandat 271.844 kb on + strandat 271.844 kb on + strandat 271.844 kb on + strandat 271.844 kb on + strandat 271.847 kb on - strandat 271.847 kb on - strandat 271.847 kb on - strandat 271.852 kb on - strandat 271.852 kb on - strandat 271.852 kb on - strandat 271.852 kb on - strandat 271.852 kb on - strandat 271.852 kb on - strandat 271.852 kb on - strandat 271.869 kb on + strandat 271.877 kb on - strandat 271.891 kb on + strandat 271.899 kb on - strandat 271.912 kb on + strandat 271.919 kb on + strandat 271.919 kb on + strandat 271.924 kb on + strandat 271.951 kb on - strandat 271.970 kb on + strandat 271.978 kb on - strandat 271.991 kb on + strand, within CCNA_00259at 271.991 kb on + strand, within CCNA_00259at 272.005 kb on + strand, within CCNA_00259at 272.029 kb on + strand, within CCNA_00259at 272.037 kb on - strand, within CCNA_00259at 272.049 kb on + strand, within CCNA_00259at 272.049 kb on + strand, within CCNA_00259at 272.049 kb on + strand, within CCNA_00259at 272.049 kb on + strand, within CCNA_00259at 272.057 kb on - strand, within CCNA_00259at 272.057 kb on - strand, within CCNA_00259at 272.093 kb on - strand, within CCNA_00259at 272.110 kb on + strand, within CCNA_00259at 272.110 kb on + strand, within CCNA_00259at 272.110 kb on + strand, within CCNA_00259at 272.117 kb on + strand, within CCNA_00259at 272.117 kb on + strand, within CCNA_00259at 272.117 kb on + strand, within CCNA_00259at 272.118 kb on - strand, within CCNA_00259at 272.125 kb on - strand, within CCNA_00259at 272.125 kb on - strand, within CCNA_00259at 272.130 kb on - strand, within CCNA_00259at 272.137 kb on - strand, within CCNA_00259at 272.188 kb on + strand, within CCNA_00259at 272.188 kb on + strand, within CCNA_00259at 272.188 kb on + strand, within CCNA_00259at 272.191 kb on - strand, within CCNA_00259at 272.196 kb on - strand, within CCNA_00259at 272.196 kb on - strand, within CCNA_00259at 272.218 kb on + strand, within CCNA_00259at 272.265 kb on + strand, within CCNA_00259at 272.266 kb on - strand, within CCNA_00259at 272.276 kb on + strand, within CCNA_00259at 272.315 kb on + strand, within CCNA_00259at 272.342 kb on + strand, within CCNA_00259at 272.347 kb on + strand, within CCNA_00259at 272.399 kb on + strand, within CCNA_00259at 272.408 kb on + strand, within CCNA_00259at 272.420 kb on + strand, within CCNA_00259at 272.429 kb on + strand, within CCNA_00259at 272.459 kb on - strand, within CCNA_00259at 272.492 kb on + strand, within CCNA_00259at 272.519 kb on - strand, within CCNA_00259at 272.519 kb on - strand, within CCNA_00259at 272.522 kb on + strand, within CCNA_00259at 272.522 kb on + strand, within CCNA_00259at 272.522 kb on + strand, within CCNA_00259at 272.534 kb on + strand, within CCNA_00259at 272.543 kb on + strand, within CCNA_00259at 272.592 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.623 kb on - strandat 272.642 kb on + strandat 272.642 kb on + strandat 272.642 kb on + strandat 272.642 kb on + strandat 272.642 kb on + strandat 272.673 kb on - strandat 272.678 kb on + strandat 272.720 kb on - strandat 272.721 kb on - strandat 272.741 kb on + strandat 272.748 kb on + strandat 272.750 kb on - strandat 272.756 kb on - strandat 272.756 kb on - strandat 272.758 kb on + strandat 272.758 kb on + strandat 272.758 kb on + strandat 272.758 kb on + strandat 272.764 kb on + strandat 272.764 kb on + strandat 272.766 kb on - strandat 272.770 kb on + strandat 272.772 kb on - strandat 272.773 kb on - strandat 272.783 kb on - strandat 272.792 kb on + strandat 272.792 kb on + strandat 272.802 kb on + strandat 272.807 kb on - strandat 272.813 kb on - strandat 272.813 kb on - strandat 272.813 kb on - strandat 272.824 kb on - strandat 272.866 kb on - strandat 272.868 kb on + strandat 272.868 kb on + strandat 272.927 kb on - strandat 272.930 kb on + strandat 272.999 kb on - strand, within CCNA_00260at 273.007 kb on - strand, within CCNA_00260at 273.008 kb on + strand, within CCNA_00260at 273.018 kb on - strand, within CCNA_00260at 273.054 kb on + strand, within CCNA_00260at 273.073 kb on - strand, within CCNA_00260at 273.112 kb on - strand, within CCNA_00260at 273.141 kb on - strand, within CCNA_00260at 273.161 kb on + strand, within CCNA_00260at 273.161 kb on + strand, within CCNA_00260at 273.161 kb on + strand, within CCNA_00260at 273.169 kb on - strand, within CCNA_00260at 273.169 kb on - strand, within CCNA_00260at 273.169 kb on - strand, within CCNA_00260at 273.194 kb on - strand, within CCNA_00260at 273.209 kb on + strand, within CCNA_00260at 273.209 kb on - strand, within CCNA_00260at 273.216 kb on - strand, within CCNA_00260at 273.217 kb on - strand, within CCNA_00260at 273.221 kb on + strand, within CCNA_00260at 273.221 kb on + strand, within CCNA_00260at 273.229 kb on - strand, within CCNA_00260at 273.229 kb on - strand, within CCNA_00260at 273.250 kb on + strand, within CCNA_00260at 273.257 kb on - strand, within CCNA_00260at 273.274 kb on - strand, within CCNA_00260at 273.304 kb on + strand, within CCNA_00260at 273.304 kb on + strand, within CCNA_00260at 273.326 kb on - strand, within CCNA_00260at 273.326 kb on - strand, within CCNA_00260at 273.348 kb on - strand, within CCNA_00260at 273.348 kb on - strand, within CCNA_00260at 273.367 kb on + strand, within CCNA_00260at 273.373 kb on + strand, within CCNA_00260at 273.385 kb on + strand, within CCNA_00260at 273.390 kb on + strand, within CCNA_00260at 273.393 kb on - strand, within CCNA_00260at 273.400 kb on - strand, within CCNA_00260at 273.420 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.454 kb on + strand, within CCNA_00260at 273.454 kb on + strand, within CCNA_00260at 273.461 kb on + strand, within CCNA_00260at 273.462 kb on - strand, within CCNA_00260at 273.481 kb on - strand, within CCNA_00260at 273.486 kb on - strand, within CCNA_00260at 273.525 kb on + strandat 273.533 kb on + strandat 273.551 kb on - strandat 273.564 kb on + strandat 273.572 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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270,973 + CCNA_00257 0.57 +0.6
270,977 - CCNA_00257 0.58 +0.2
270,991 - CCNA_00257 0.59 -1.8
271,011 - CCNA_00257 0.60 +0.5
271,024 - CCNA_00257 0.61 +0.7
271,115 + CCNA_00257 0.67 -1.5
271,123 - CCNA_00257 0.68 -2.2
271,123 - CCNA_00257 0.68 -2.5
271,160 + CCNA_00257 0.71 -1.6
271,168 - CCNA_00257 0.71 +1.6
271,168 - CCNA_00257 0.71 +0.7
271,173 - CCNA_00257 0.72 -1.5
271,200 + CCNA_00257 0.74 -1.2
271,247 + CCNA_00257 0.77 -0.0
271,288 - CCNA_00257 0.80 +0.3
271,319 + CCNA_00257 0.82 +0.9
271,322 - CCNA_00257 0.82 -1.1
271,322 - CCNA_00257 0.82 -1.4
271,327 - CCNA_00257 0.83 -0.9
271,327 - CCNA_00257 0.83 -0.0
271,390 + CCNA_00257 0.87 -0.7
271,407 + CCNA_00257 0.88 -1.5
271,586 + +0.9
271,610 - -0.4
271,650 + +0.6
271,689 + +0.3
271,718 + +0.2
271,722 + +0.1
271,738 - -0.7
271,741 - -0.1
271,741 - +1.2
271,759 - -0.3
271,761 + +0.1
271,766 + +0.2
271,769 - -0.5
271,769 - +0.5
271,769 - -1.1
271,769 - +0.5
271,774 - +0.8
271,809 + +1.1
271,809 + +1.4
271,819 - -0.5
271,824 + -0.0
271,834 + -0.4
271,839 + -1.0
271,839 + +0.4
271,839 + +0.1
271,839 + -0.4
271,842 - -1.2
271,842 - -0.9
271,844 + -0.4
271,844 + -0.2
271,844 + +0.0
271,844 + -0.6
271,847 - +0.7
271,847 - +0.2
271,847 - -0.1
271,852 - +2.2
271,852 - +0.1
271,852 - -0.0
271,852 - +0.5
271,852 - -0.2
271,852 - -0.2
271,852 - -0.0
271,869 + +0.0
271,877 - -0.7
271,891 + -1.9
271,899 - -0.7
271,912 + -0.3
271,919 + -2.2
271,919 + -1.8
271,924 + +1.1
271,951 - +0.4
271,970 + +0.6
271,978 - +0.7
271,991 + CCNA_00259 0.11 +1.3
271,991 + CCNA_00259 0.11 -0.1
272,005 + CCNA_00259 0.13 +0.5
272,029 + CCNA_00259 0.17 +0.5
272,037 - CCNA_00259 0.18 -0.2
272,049 + CCNA_00259 0.20 +0.3
272,049 + CCNA_00259 0.20 +1.8
272,049 + CCNA_00259 0.20 -0.5
272,049 + CCNA_00259 0.20 -1.7
272,057 - CCNA_00259 0.21 +0.4
272,057 - CCNA_00259 0.21 -0.8
272,093 - CCNA_00259 0.26 +0.1
272,110 + CCNA_00259 0.28 -0.7
272,110 + CCNA_00259 0.28 -0.8
272,110 + CCNA_00259 0.28 -1.9
272,117 + CCNA_00259 0.29 +0.3
272,117 + CCNA_00259 0.29 +1.2
272,117 + CCNA_00259 0.29 -1.3
272,118 - CCNA_00259 0.29 -0.7
272,125 - CCNA_00259 0.30 -0.3
272,125 - CCNA_00259 0.30 +0.2
272,130 - CCNA_00259 0.31 +0.6
272,137 - CCNA_00259 0.32 +0.6
272,188 + CCNA_00259 0.39 -0.1
272,188 + CCNA_00259 0.39 -1.2
272,188 + CCNA_00259 0.39 -0.6
272,191 - CCNA_00259 0.40 -1.1
272,196 - CCNA_00259 0.40 -0.8
272,196 - CCNA_00259 0.40 -0.6
272,218 + CCNA_00259 0.43 +0.4
272,265 + CCNA_00259 0.50 -1.4
272,266 - CCNA_00259 0.50 +0.0
272,276 + CCNA_00259 0.51 -0.6
272,315 + CCNA_00259 0.57 -0.5
272,342 + CCNA_00259 0.61 -0.4
272,347 + CCNA_00259 0.61 -0.6
272,399 + CCNA_00259 0.69 -1.8
272,408 + CCNA_00259 0.70 -1.3
272,420 + CCNA_00259 0.72 -1.2
272,429 + CCNA_00259 0.73 +0.4
272,459 - CCNA_00259 0.77 -0.7
272,492 + CCNA_00259 0.82 +0.8
272,519 - CCNA_00259 0.86 +0.0
272,519 - CCNA_00259 0.86 +0.2
272,522 + CCNA_00259 0.86 +0.2
272,522 + CCNA_00259 0.86 +0.2
272,522 + CCNA_00259 0.86 -0.1
272,534 + CCNA_00259 0.88 +0.3
272,543 + CCNA_00259 0.89 -0.2
272,592 + +0.2
272,602 + +1.3
272,602 + -1.6
272,602 + +0.2
272,602 + +0.2
272,602 + -0.2
272,602 + -0.2
272,602 + -2.4
272,602 + -0.6
272,602 + -0.5
272,602 + +0.8
272,602 + +0.1
272,602 + +0.3
272,602 + +0.3
272,602 + +0.0
272,602 + -2.1
272,602 + -0.1
272,602 + -0.2
272,602 + +0.2
272,602 + -0.5
272,602 + -0.1
272,602 + +0.1
272,610 - -1.0
272,610 - -0.5
272,610 - +0.3
272,610 - +0.3
272,610 - -1.0
272,610 - +1.2
272,610 - -2.0
272,610 - +0.2
272,610 - -1.0
272,610 - +0.8
272,610 - +0.4
272,610 - +0.6
272,610 - -0.5
272,610 - -0.1
272,623 - -0.5
272,642 + -0.7
272,642 + -0.3
272,642 + -0.2
272,642 + -2.6
272,642 + -1.0
272,673 - -0.7
272,678 + -0.7
272,720 - -0.6
272,721 - +1.7
272,741 + -0.2
272,748 + -0.1
272,750 - -0.4
272,756 - +0.5
272,756 - -0.6
272,758 + -0.1
272,758 + -1.1
272,758 + +0.5
272,758 + +0.2
272,764 + -0.7
272,764 + -0.2
272,766 - -0.2
272,770 + -1.1
272,772 - -0.3
272,773 - -0.5
272,783 - +0.6
272,792 + -0.5
272,792 + -0.8
272,802 + -1.5
272,807 - +0.6
272,813 - +1.4
272,813 - -1.3
272,813 - -0.4
272,824 - -0.1
272,866 - -1.0
272,868 + -0.2
272,868 + -0.3
272,927 - +0.2
272,930 + -0.5
272,999 - CCNA_00260 0.18 +0.3
273,007 - CCNA_00260 0.20 -0.8
273,008 + CCNA_00260 0.20 -0.7
273,018 - CCNA_00260 0.21 +0.1
273,054 + CCNA_00260 0.26 -0.1
273,073 - CCNA_00260 0.29 -0.1
273,112 - CCNA_00260 0.35 -0.6
273,141 - CCNA_00260 0.39 +0.2
273,161 + CCNA_00260 0.42 -0.4
273,161 + CCNA_00260 0.42 -0.3
273,161 + CCNA_00260 0.42 -2.2
273,169 - CCNA_00260 0.43 -0.4
273,169 - CCNA_00260 0.43 -0.5
273,169 - CCNA_00260 0.43 +1.2
273,194 - CCNA_00260 0.47 -0.4
273,209 + CCNA_00260 0.49 +1.6
273,209 - CCNA_00260 0.49 +0.5
273,216 - CCNA_00260 0.50 -1.0
273,217 - CCNA_00260 0.50 -1.1
273,221 + CCNA_00260 0.51 -0.0
273,221 + CCNA_00260 0.51 +0.1
273,229 - CCNA_00260 0.52 -0.2
273,229 - CCNA_00260 0.52 +1.2
273,250 + CCNA_00260 0.55 +1.0
273,257 - CCNA_00260 0.56 +0.3
273,274 - CCNA_00260 0.59 +0.6
273,304 + CCNA_00260 0.63 +1.3
273,304 + CCNA_00260 0.63 -0.0
273,326 - CCNA_00260 0.66 +0.6
273,326 - CCNA_00260 0.66 -0.3
273,348 - CCNA_00260 0.69 -0.0
273,348 - CCNA_00260 0.69 -0.7
273,367 + CCNA_00260 0.72 +0.8
273,373 + CCNA_00260 0.73 +0.2
273,385 + CCNA_00260 0.75 +0.6
273,390 + CCNA_00260 0.75 -0.3
273,393 - CCNA_00260 0.76 -2.5
273,400 - CCNA_00260 0.77 -0.2
273,420 + CCNA_00260 0.80 +0.2
273,425 + CCNA_00260 0.80 -1.7
273,425 + CCNA_00260 0.80 -0.3
273,425 + CCNA_00260 0.80 -1.1
273,425 + CCNA_00260 0.80 +0.6
273,425 + CCNA_00260 0.80 -0.3
273,425 + CCNA_00260 0.80 +0.6
273,433 - CCNA_00260 0.82 -0.0
273,433 - CCNA_00260 0.82 -0.5
273,433 - CCNA_00260 0.82 -1.2
273,433 - CCNA_00260 0.82 -1.4
273,433 - CCNA_00260 0.82 +0.3
273,433 - CCNA_00260 0.82 +0.4
273,433 - CCNA_00260 0.82 -0.5
273,433 - CCNA_00260 0.82 +0.8
273,433 - CCNA_00260 0.82 +1.7
273,433 - CCNA_00260 0.82 -0.2
273,454 + CCNA_00260 0.85 -0.5
273,454 + CCNA_00260 0.85 -0.2
273,461 + CCNA_00260 0.86 -0.4
273,462 - CCNA_00260 0.86 -1.5
273,481 - CCNA_00260 0.89 -1.5
273,486 - CCNA_00260 0.89 -1.1
273,525 + -0.6
273,533 + -0.1
273,551 - +0.6
273,564 + -1.4
273,572 - -1.3

Or see this region's nucleotide sequence