Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00246

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00244 and CCNA_00245 are separated by 28 nucleotidesCCNA_00245 and CCNA_00246 are separated by 44 nucleotidesCCNA_00246 and CCNA_00247 are separated by 141 nucleotidesCCNA_00247 and CCNA_00248 are separated by 77 nucleotides CCNA_00244: CCNA_00244 - HAD superfamily phophatase, at 256,953 to 257,594 _00244 CCNA_00245: CCNA_00245 - pterin-4-alpha-carbinolamine dehydratase, at 257,623 to 257,907 _00245 CCNA_00246: CCNA_00246 - cyclohexanol dehydrogenase, at 257,952 to 258,737 _00246 CCNA_00247: CCNA_00247 - two-component receiver protein SpdR, at 258,879 to 259,436 _00247 CCNA_00248: CCNA_00248 - sensor histidine protein kinase, at 259,514 to 260,914 _00248 Position (kb) 257 258 259Strain fitness (log2 ratio) -2 -1 0 1 2 3at 256.991 kb on + strandat 256.999 kb on - strandat 257.034 kb on - strand, within CCNA_00244at 257.046 kb on + strand, within CCNA_00244at 257.052 kb on - strand, within CCNA_00244at 257.103 kb on + strand, within CCNA_00244at 257.110 kb on + strand, within CCNA_00244at 257.122 kb on - strand, within CCNA_00244at 257.125 kb on - strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.152 kb on + strand, within CCNA_00244at 257.160 kb on - strand, within CCNA_00244at 257.173 kb on + strand, within CCNA_00244at 257.188 kb on + strand, within CCNA_00244at 257.190 kb on + strand, within CCNA_00244at 257.195 kb on + strand, within CCNA_00244at 257.196 kb on - strand, within CCNA_00244at 257.218 kb on + strand, within CCNA_00244at 257.233 kb on - strand, within CCNA_00244at 257.259 kb on + strand, within CCNA_00244at 257.267 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.307 kb on + strand, within CCNA_00244at 257.308 kb on + strand, within CCNA_00244at 257.319 kb on + strand, within CCNA_00244at 257.319 kb on + strand, within CCNA_00244at 257.327 kb on - strand, within CCNA_00244at 257.327 kb on - strand, within CCNA_00244at 257.327 kb on - strand, within CCNA_00244at 257.327 kb on - strand, within CCNA_00244at 257.364 kb on - strand, within CCNA_00244at 257.366 kb on + strand, within CCNA_00244at 257.366 kb on + strand, within CCNA_00244at 257.374 kb on - strand, within CCNA_00244at 257.374 kb on - strand, within CCNA_00244at 257.386 kb on + strand, within CCNA_00244at 257.386 kb on + strand, within CCNA_00244at 257.394 kb on - strand, within CCNA_00244at 257.409 kb on + strand, within CCNA_00244at 257.452 kb on - strand, within CCNA_00244at 257.483 kb on + strand, within CCNA_00244at 257.534 kb on + strandat 257.599 kb on + strandat 257.606 kb on - strandat 257.617 kb on + strandat 257.617 kb on + strandat 257.617 kb on + strandat 257.625 kb on - strandat 257.625 kb on - strandat 257.664 kb on + strand, within CCNA_00245at 257.664 kb on + strand, within CCNA_00245at 257.672 kb on - strand, within CCNA_00245at 257.678 kb on - strand, within CCNA_00245at 257.706 kb on + strand, within CCNA_00245at 257.729 kb on + strand, within CCNA_00245at 257.764 kb on + strand, within CCNA_00245at 257.787 kb on + strand, within CCNA_00245at 257.801 kb on + strand, within CCNA_00245at 257.801 kb on - strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.817 kb on - strand, within CCNA_00245at 257.827 kb on - strand, within CCNA_00245at 257.855 kb on + strand, within CCNA_00245at 257.871 kb on - strand, within CCNA_00245at 257.872 kb on - strand, within CCNA_00245at 257.886 kb on + strandat 257.886 kb on + strandat 257.895 kb on - strandat 257.960 kb on + strandat 257.960 kb on + strandat 257.968 kb on - strandat 258.006 kb on + strandat 258.041 kb on + strand, within CCNA_00246at 258.041 kb on + strand, within CCNA_00246at 258.041 kb on + strand, within CCNA_00246at 258.049 kb on - strand, within CCNA_00246at 258.073 kb on + strand, within CCNA_00246at 258.073 kb on + strand, within CCNA_00246at 258.110 kb on + strand, within CCNA_00246at 258.118 kb on - strand, within CCNA_00246at 258.132 kb on + strand, within CCNA_00246at 258.138 kb on + strand, within CCNA_00246at 258.140 kb on - strand, within CCNA_00246at 258.225 kb on - strand, within CCNA_00246at 258.238 kb on - strand, within CCNA_00246at 258.245 kb on + strand, within CCNA_00246at 258.259 kb on + strand, within CCNA_00246at 258.329 kb on - strand, within CCNA_00246at 258.343 kb on + strand, within CCNA_00246at 258.356 kb on - strand, within CCNA_00246at 258.477 kb on + strand, within CCNA_00246at 258.477 kb on + strand, within CCNA_00246at 258.482 kb on + strand, within CCNA_00246at 258.482 kb on + strand, within CCNA_00246at 258.485 kb on - strand, within CCNA_00246at 258.485 kb on - strand, within CCNA_00246at 258.485 kb on - strand, within CCNA_00246at 258.490 kb on - strand, within CCNA_00246at 258.493 kb on + strand, within CCNA_00246at 258.524 kb on - strand, within CCNA_00246at 258.525 kb on + strand, within CCNA_00246at 258.525 kb on + strand, within CCNA_00246at 258.534 kb on + strand, within CCNA_00246at 258.544 kb on + strand, within CCNA_00246at 258.581 kb on + strand, within CCNA_00246at 258.582 kb on + strand, within CCNA_00246at 258.582 kb on + strand, within CCNA_00246at 258.582 kb on + strand, within CCNA_00246at 258.585 kb on - strand, within CCNA_00246at 258.590 kb on - strand, within CCNA_00246at 258.592 kb on + strand, within CCNA_00246at 258.600 kb on - strand, within CCNA_00246at 258.667 kb on - strandat 258.686 kb on + strandat 258.686 kb on + strandat 258.686 kb on + strandat 258.694 kb on - strandat 258.704 kb on + strandat 258.741 kb on + strandat 258.749 kb on - strandat 258.749 kb on - strandat 258.763 kb on + strandat 258.776 kb on + strandat 258.776 kb on + strandat 258.784 kb on - strandat 258.785 kb on - strandat 258.786 kb on + strandat 258.823 kb on + strandat 258.829 kb on + strandat 258.833 kb on + strandat 258.841 kb on - strandat 258.841 kb on - strandat 258.841 kb on - strandat 258.843 kb on - strandat 258.867 kb on + strandat 258.875 kb on - strandat 258.876 kb on - strandat 258.916 kb on + strandat 258.924 kb on - strandat 258.930 kb on + strandat 258.932 kb on - strandat 258.938 kb on - strand, within CCNA_00247at 258.964 kb on - strand, within CCNA_00247at 258.964 kb on - strand, within CCNA_00247at 258.978 kb on + strand, within CCNA_00247at 258.981 kb on - strand, within CCNA_00247at 258.982 kb on + strand, within CCNA_00247at 259.093 kb on + strand, within CCNA_00247at 259.093 kb on + strand, within CCNA_00247at 259.101 kb on - strand, within CCNA_00247at 259.152 kb on + strand, within CCNA_00247at 259.160 kb on - strand, within CCNA_00247at 259.194 kb on - strand, within CCNA_00247at 259.212 kb on - strand, within CCNA_00247at 259.215 kb on + strand, within CCNA_00247at 259.215 kb on + strand, within CCNA_00247at 259.215 kb on + strand, within CCNA_00247at 259.222 kb on - strand, within CCNA_00247at 259.223 kb on - strand, within CCNA_00247at 259.223 kb on - strand, within CCNA_00247at 259.223 kb on - strand, within CCNA_00247at 259.223 kb on - strand, within CCNA_00247at 259.231 kb on + strand, within CCNA_00247at 259.241 kb on - strand, within CCNA_00247at 259.245 kb on + strand, within CCNA_00247at 259.245 kb on + strand, within CCNA_00247at 259.245 kb on + strand, within CCNA_00247at 259.245 kb on + strand, within CCNA_00247at 259.253 kb on - strand, within CCNA_00247at 259.253 kb on - strand, within CCNA_00247at 259.253 kb on - strand, within CCNA_00247at 259.258 kb on - strand, within CCNA_00247at 259.259 kb on + strand, within CCNA_00247at 259.284 kb on + strand, within CCNA_00247at 259.284 kb on + strand, within CCNA_00247at 259.292 kb on - strand, within CCNA_00247at 259.292 kb on - strand, within CCNA_00247at 259.321 kb on - strand, within CCNA_00247at 259.327 kb on - strand, within CCNA_00247at 259.327 kb on - strand, within CCNA_00247at 259.327 kb on - strand, within CCNA_00247at 259.332 kb on - strand, within CCNA_00247at 259.334 kb on + strand, within CCNA_00247at 259.334 kb on + strand, within CCNA_00247at 259.334 kb on + strand, within CCNA_00247at 259.334 kb on + strand, within CCNA_00247at 259.334 kb on + strand, within CCNA_00247at 259.334 kb on + strand, within CCNA_00247at 259.334 kb on + strand, within CCNA_00247at 259.342 kb on - strand, within CCNA_00247at 259.342 kb on - strand, within CCNA_00247at 259.342 kb on - strand, within CCNA_00247at 259.342 kb on - strand, within CCNA_00247at 259.342 kb on - strand, within CCNA_00247at 259.342 kb on - strand, within CCNA_00247at 259.342 kb on - strand, within CCNA_00247at 259.342 kb on - strand, within CCNA_00247at 259.352 kb on + strand, within CCNA_00247at 259.356 kb on + strand, within CCNA_00247at 259.357 kb on - strand, within CCNA_00247at 259.369 kb on - strand, within CCNA_00247at 259.377 kb on + strand, within CCNA_00247at 259.433 kb on + strandat 259.470 kb on - strandat 259.512 kb on + strandat 259.512 kb on + strandat 259.520 kb on - strandat 259.520 kb on - strandat 259.522 kb on + strandat 259.548 kb on + strandat 259.548 kb on + strandat 259.549 kb on + strandat 259.549 kb on + strandat 259.549 kb on + strandat 259.556 kb on - strandat 259.557 kb on - strandat 259.557 kb on - strandat 259.570 kb on + strandat 259.578 kb on - strandat 259.578 kb on - strandat 259.578 kb on - strandat 259.578 kb on - strandat 259.583 kb on + strandat 259.601 kb on + strandat 259.609 kb on - strandat 259.609 kb on - strandat 259.626 kb on + strandat 259.643 kb on + strandat 259.649 kb on + strandat 259.649 kb on + strandat 259.649 kb on + strandat 259.657 kb on - strand, within CCNA_00248at 259.657 kb on - strand, within CCNA_00248at 259.657 kb on - strand, within CCNA_00248at 259.700 kb on + strand, within CCNA_00248at 259.709 kb on - strand, within CCNA_00248at 259.715 kb on - strand, within CCNA_00248at 259.715 kb on - strand, within CCNA_00248

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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256,991 + +0.1
256,999 - -0.9
257,034 - CCNA_00244 0.13 +0.1
257,046 + CCNA_00244 0.14 -1.2
257,052 - CCNA_00244 0.15 -2.0
257,103 + CCNA_00244 0.23 -0.4
257,110 + CCNA_00244 0.24 -0.6
257,122 - CCNA_00244 0.26 -0.7
257,125 - CCNA_00244 0.27 -0.3
257,147 + CCNA_00244 0.30 -1.6
257,147 + CCNA_00244 0.30 +0.6
257,147 + CCNA_00244 0.30 -1.3
257,147 + CCNA_00244 0.30 -0.1
257,147 + CCNA_00244 0.30 -0.2
257,147 + CCNA_00244 0.30 +0.4
257,152 + CCNA_00244 0.31 +0.1
257,160 - CCNA_00244 0.32 -0.0
257,173 + CCNA_00244 0.34 -0.5
257,188 + CCNA_00244 0.37 -0.3
257,190 + CCNA_00244 0.37 +0.7
257,195 + CCNA_00244 0.38 +0.2
257,196 - CCNA_00244 0.38 -0.0
257,218 + CCNA_00244 0.41 -0.3
257,233 - CCNA_00244 0.44 -1.3
257,259 + CCNA_00244 0.48 -0.1
257,267 - CCNA_00244 0.49 -0.1
257,272 - CCNA_00244 0.50 -0.9
257,272 - CCNA_00244 0.50 -0.9
257,272 - CCNA_00244 0.50 +0.5
257,272 - CCNA_00244 0.50 +0.1
257,272 - CCNA_00244 0.50 +0.2
257,307 + CCNA_00244 0.55 -0.4
257,308 + CCNA_00244 0.55 +0.8
257,319 + CCNA_00244 0.57 +0.6
257,319 + CCNA_00244 0.57 -2.0
257,327 - CCNA_00244 0.58 +0.1
257,327 - CCNA_00244 0.58 -1.0
257,327 - CCNA_00244 0.58 -0.4
257,327 - CCNA_00244 0.58 -0.3
257,364 - CCNA_00244 0.64 +2.6
257,366 + CCNA_00244 0.64 -0.4
257,366 + CCNA_00244 0.64 +1.0
257,374 - CCNA_00244 0.66 -0.6
257,374 - CCNA_00244 0.66 -0.0
257,386 + CCNA_00244 0.67 -0.6
257,386 + CCNA_00244 0.67 -0.9
257,394 - CCNA_00244 0.69 +0.2
257,409 + CCNA_00244 0.71 -1.4
257,452 - CCNA_00244 0.78 -0.6
257,483 + CCNA_00244 0.83 -0.5
257,534 + -0.1
257,599 + -0.6
257,606 - -0.6
257,617 + +0.7
257,617 + -0.3
257,617 + +0.6
257,625 - -0.1
257,625 - +0.1
257,664 + CCNA_00245 0.14 -0.4
257,664 + CCNA_00245 0.14 +0.4
257,672 - CCNA_00245 0.17 -0.8
257,678 - CCNA_00245 0.19 -0.3
257,706 + CCNA_00245 0.29 -0.4
257,729 + CCNA_00245 0.37 +0.1
257,764 + CCNA_00245 0.49 -1.4
257,787 + CCNA_00245 0.58 -0.8
257,801 + CCNA_00245 0.62 +0.2
257,801 - CCNA_00245 0.62 +0.8
257,809 + CCNA_00245 0.65 +0.4
257,809 + CCNA_00245 0.65 -0.3
257,809 + CCNA_00245 0.65 +0.1
257,809 + CCNA_00245 0.65 -0.7
257,809 + CCNA_00245 0.65 -0.9
257,809 + CCNA_00245 0.65 -0.2
257,817 - CCNA_00245 0.68 -0.3
257,827 - CCNA_00245 0.72 -0.1
257,855 + CCNA_00245 0.81 -1.3
257,871 - CCNA_00245 0.87 +0.1
257,872 - CCNA_00245 0.87 -0.7
257,886 + -0.4
257,886 + +0.1
257,895 - -1.3
257,960 + +0.1
257,960 + +0.2
257,968 - +0.1
258,006 + -0.6
258,041 + CCNA_00246 0.11 -0.2
258,041 + CCNA_00246 0.11 -0.7
258,041 + CCNA_00246 0.11 +0.1
258,049 - CCNA_00246 0.12 +0.1
258,073 + CCNA_00246 0.15 +0.5
258,073 + CCNA_00246 0.15 +0.1
258,110 + CCNA_00246 0.20 +0.4
258,118 - CCNA_00246 0.21 +0.5
258,132 + CCNA_00246 0.23 +0.6
258,138 + CCNA_00246 0.24 -0.3
258,140 - CCNA_00246 0.24 -0.2
258,225 - CCNA_00246 0.35 +2.8
258,238 - CCNA_00246 0.36 -1.8
258,245 + CCNA_00246 0.37 -0.1
258,259 + CCNA_00246 0.39 -0.7
258,329 - CCNA_00246 0.48 -0.5
258,343 + CCNA_00246 0.50 -0.4
258,356 - CCNA_00246 0.51 +0.6
258,477 + CCNA_00246 0.67 +0.0
258,477 + CCNA_00246 0.67 +0.4
258,482 + CCNA_00246 0.67 -0.7
258,482 + CCNA_00246 0.67 +0.2
258,485 - CCNA_00246 0.68 -0.3
258,485 - CCNA_00246 0.68 -1.0
258,485 - CCNA_00246 0.68 -0.2
258,490 - CCNA_00246 0.68 -2.2
258,493 + CCNA_00246 0.69 +0.3
258,524 - CCNA_00246 0.73 +0.2
258,525 + CCNA_00246 0.73 +0.4
258,525 + CCNA_00246 0.73 +0.1
258,534 + CCNA_00246 0.74 +0.4
258,544 + CCNA_00246 0.75 +0.2
258,581 + CCNA_00246 0.80 -0.3
258,582 + CCNA_00246 0.80 +0.1
258,582 + CCNA_00246 0.80 +0.2
258,582 + CCNA_00246 0.80 -1.5
258,585 - CCNA_00246 0.81 -0.6
258,590 - CCNA_00246 0.81 -1.2
258,592 + CCNA_00246 0.81 +0.1
258,600 - CCNA_00246 0.82 -0.7
258,667 - -0.3
258,686 + -0.5
258,686 + -0.0
258,686 + +1.5
258,694 - +0.3
258,704 + -0.3
258,741 + +0.1
258,749 - +0.1
258,749 - +1.6
258,763 + +0.2
258,776 + -0.4
258,776 + -0.8
258,784 - +0.3
258,785 - +0.5
258,786 + +0.3
258,823 + -0.1
258,829 + -0.8
258,833 + -0.0
258,841 - +0.7
258,841 - +0.5
258,841 - +0.0
258,843 - +0.2
258,867 + -1.3
258,875 - -0.3
258,876 - +0.5
258,916 + -0.5
258,924 - +0.0
258,930 + -1.0
258,932 - -0.4
258,938 - CCNA_00247 0.11 +0.2
258,964 - CCNA_00247 0.15 -0.1
258,964 - CCNA_00247 0.15 -0.0
258,978 + CCNA_00247 0.18 -1.2
258,981 - CCNA_00247 0.18 +0.8
258,982 + CCNA_00247 0.18 -0.2
259,093 + CCNA_00247 0.38 -0.4
259,093 + CCNA_00247 0.38 +0.4
259,101 - CCNA_00247 0.40 +0.5
259,152 + CCNA_00247 0.49 +0.1
259,160 - CCNA_00247 0.50 +0.2
259,194 - CCNA_00247 0.56 -0.3
259,212 - CCNA_00247 0.60 -0.1
259,215 + CCNA_00247 0.60 -0.2
259,215 + CCNA_00247 0.60 -0.2
259,215 + CCNA_00247 0.60 +1.0
259,222 - CCNA_00247 0.61 +0.3
259,223 - CCNA_00247 0.62 +0.1
259,223 - CCNA_00247 0.62 +0.1
259,223 - CCNA_00247 0.62 +0.3
259,223 - CCNA_00247 0.62 +0.1
259,231 + CCNA_00247 0.63 +0.7
259,241 - CCNA_00247 0.65 +0.7
259,245 + CCNA_00247 0.66 +0.4
259,245 + CCNA_00247 0.66 -1.0
259,245 + CCNA_00247 0.66 +0.7
259,245 + CCNA_00247 0.66 +0.6
259,253 - CCNA_00247 0.67 -0.8
259,253 - CCNA_00247 0.67 +0.6
259,253 - CCNA_00247 0.67 -0.4
259,258 - CCNA_00247 0.68 +0.4
259,259 + CCNA_00247 0.68 -0.9
259,284 + CCNA_00247 0.73 -0.0
259,284 + CCNA_00247 0.73 -0.9
259,292 - CCNA_00247 0.74 +0.2
259,292 - CCNA_00247 0.74 -0.5
259,321 - CCNA_00247 0.79 +0.4
259,327 - CCNA_00247 0.80 +0.9
259,327 - CCNA_00247 0.80 -0.1
259,327 - CCNA_00247 0.80 +0.3
259,332 - CCNA_00247 0.81 +1.2
259,334 + CCNA_00247 0.82 -0.7
259,334 + CCNA_00247 0.82 +1.6
259,334 + CCNA_00247 0.82 -1.2
259,334 + CCNA_00247 0.82 +0.3
259,334 + CCNA_00247 0.82 -0.0
259,334 + CCNA_00247 0.82 -0.9
259,334 + CCNA_00247 0.82 -0.7
259,342 - CCNA_00247 0.83 -1.2
259,342 - CCNA_00247 0.83 +0.7
259,342 - CCNA_00247 0.83 +0.6
259,342 - CCNA_00247 0.83 -0.1
259,342 - CCNA_00247 0.83 -0.1
259,342 - CCNA_00247 0.83 +0.6
259,342 - CCNA_00247 0.83 -1.0
259,342 - CCNA_00247 0.83 -0.1
259,352 + CCNA_00247 0.85 +0.3
259,356 + CCNA_00247 0.85 -1.0
259,357 - CCNA_00247 0.86 -0.0
259,369 - CCNA_00247 0.88 -0.1
259,377 + CCNA_00247 0.89 -0.6
259,433 + -0.5
259,470 - -0.4
259,512 + -1.6
259,512 + +0.1
259,520 - +0.2
259,520 - +0.2
259,522 + +0.1
259,548 + -1.8
259,548 + -1.6
259,549 + -0.7
259,549 + +0.6
259,549 + +0.2
259,556 - +0.5
259,557 - -0.1
259,557 - +0.3
259,570 + -0.4
259,578 - -0.7
259,578 - +0.3
259,578 - -0.0
259,578 - +0.3
259,583 + -1.4
259,601 + +0.2
259,609 - +0.5
259,609 - -0.2
259,626 + +0.1
259,643 + +0.1
259,649 + +0.8
259,649 + -0.6
259,649 + -0.0
259,657 - CCNA_00248 0.10 +0.0
259,657 - CCNA_00248 0.10 +0.0
259,657 - CCNA_00248 0.10 +0.7
259,700 + CCNA_00248 0.13 +0.4
259,709 - CCNA_00248 0.14 -0.3
259,715 - CCNA_00248 0.14 -0.2
259,715 - CCNA_00248 0.14 +0.0

Or see this region's nucleotide sequence