Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00196 and CCNA_00197 are separated by 589 nucleotides CCNA_00197 and CCNA_00198 overlap by 4 nucleotides CCNA_00198 and CCNA_00199 are separated by 130 nucleotides
CCNA_00196: CCNA_00196 - 3-isopropylmalate dehydratase large subunit, at 209,092 to 210,531
_00196
CCNA_00197: CCNA_00197 - LSU ribosomal protein L19P, at 211,121 to 211,522
_00197
CCNA_00198: CCNA_00198 - tRNA (guanine-N1) -methyltransferase, at 211,519 to 212,256
_00198
CCNA_00199: CCNA_00199 - TadG/vWA-family protein, at 212,387 to 214,267
_00199
Position (kb) 211
212 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 210.123 kb on + strand, within CCNA_00196 at 210.125 kb on + strand, within CCNA_00196 at 210.162 kb on - strand, within CCNA_00196 at 210.175 kb on + strand, within CCNA_00196 at 210.180 kb on + strand, within CCNA_00196 at 210.180 kb on + strand, within CCNA_00196 at 210.180 kb on + strand, within CCNA_00196 at 210.193 kb on - strand, within CCNA_00196 at 210.214 kb on - strand, within CCNA_00196 at 210.318 kb on + strand, within CCNA_00196 at 210.319 kb on + strand, within CCNA_00196 at 210.322 kb on - strand, within CCNA_00196 at 210.327 kb on - strand, within CCNA_00196 at 210.358 kb on - strand, within CCNA_00196 at 210.369 kb on - strand, within CCNA_00196 at 210.374 kb on - strand, within CCNA_00196 at 210.381 kb on + strand, within CCNA_00196 at 210.381 kb on + strand, within CCNA_00196 at 210.412 kb on + strand at 210.414 kb on + strand at 210.420 kb on - strand at 210.429 kb on + strand at 210.437 kb on - strand at 210.442 kb on + strand at 210.455 kb on - strand at 210.460 kb on - strand at 210.505 kb on - strand at 210.505 kb on - strand at 210.505 kb on - strand at 210.640 kb on - strand at 210.662 kb on - strand at 210.709 kb on + strand at 210.717 kb on - strand at 210.717 kb on - strand at 210.748 kb on - strand at 210.838 kb on + strand at 210.849 kb on + strand at 210.854 kb on + strand at 210.859 kb on + strand at 210.867 kb on - strand at 210.867 kb on - strand at 210.867 kb on - strand at 210.867 kb on - strand at 210.912 kb on + strand at 210.912 kb on + strand at 210.913 kb on + strand at 210.973 kb on + strand at 210.981 kb on - strand at 211.001 kb on + strand at 211.002 kb on + strand at 211.031 kb on + strand at 211.089 kb on - strand at 211.118 kb on + strand at 211.118 kb on + strand at 211.119 kb on - strand at 211.126 kb on - strand at 211.191 kb on - strand, within CCNA_00197 at 211.211 kb on - strand, within CCNA_00197 at 211.561 kb on - strand at 212.288 kb on - strand at 212.288 kb on - strand at 212.293 kb on + strand at 212.295 kb on - strand at 212.295 kb on - strand at 212.316 kb on - strand at 212.325 kb on + strand at 212.377 kb on + strand at 212.382 kb on + strand at 212.382 kb on + strand at 212.382 kb on + strand at 212.398 kb on + strand at 212.409 kb on + strand at 212.415 kb on + strand at 212.423 kb on - strand at 212.448 kb on + strand at 212.464 kb on - strand at 212.492 kb on + strand at 212.500 kb on - strand at 212.520 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 210,123 + CCNA_00196 0.72 -0.1 210,125 + CCNA_00196 0.72 +1.1 210,162 - CCNA_00196 0.74 +0.1 210,175 + CCNA_00196 0.75 -0.3 210,180 + CCNA_00196 0.76 -0.1 210,180 + CCNA_00196 0.76 -0.9 210,180 + CCNA_00196 0.76 -0.0 210,193 - CCNA_00196 0.76 +0.1 210,214 - CCNA_00196 0.78 -0.1 210,318 + CCNA_00196 0.85 +0.7 210,319 + CCNA_00196 0.85 -0.1 210,322 - CCNA_00196 0.85 -0.3 210,327 - CCNA_00196 0.86 -0.9 210,358 - CCNA_00196 0.88 +0.7 210,369 - CCNA_00196 0.89 -0.1 210,374 - CCNA_00196 0.89 +0.3 210,381 + CCNA_00196 0.90 -0.4 210,381 + CCNA_00196 0.90 -0.4 210,412 + -0.3 210,414 + -1.2 210,420 - +0.2 210,429 + -0.3 210,437 - -0.5 210,442 + +0.3 210,455 - -1.3 210,460 - +0.0 210,505 - +0.2 210,505 - -2.0 210,505 - +1.2 210,640 - -0.8 210,662 - -0.2 210,709 + -0.4 210,717 - +0.1 210,717 - +0.7 210,748 - -0.0 210,838 + -0.2 210,849 + -0.2 210,854 + -0.4 210,859 + -0.7 210,867 - +1.3 210,867 - +1.3 210,867 - -0.3 210,867 - -1.3 210,912 + -0.1 210,912 + -0.0 210,913 + +0.9 210,973 + -0.0 210,981 - +0.3 211,001 + +2.3 211,002 + -1.1 211,031 + +0.4 211,089 - +0.5 211,118 + -0.2 211,118 + +1.8 211,119 - +0.0 211,126 - +0.3 211,191 - CCNA_00197 0.17 -0.6 211,211 - CCNA_00197 0.22 -0.7 211,561 - -0.5 212,288 - +0.4 212,288 - -0.4 212,293 + -2.0 212,295 - -0.1 212,295 - -0.4 212,316 - -0.4 212,325 + +0.6 212,377 + +0.6 212,382 + +0.9 212,382 + +0.3 212,382 + +0.3 212,398 + +0.1 212,409 + -0.5 212,415 + +0.8 212,423 - +0.3 212,448 + +0.0 212,464 - -3.0 212,492 + -0.1 212,500 - +0.7 212,520 + -0.0
Or see this region's nucleotide sequence