Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00163

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00162 and CCNA_00163 are separated by 46 nucleotidesCCNA_00163 and CCNA_00164 overlap by 11 nucleotides CCNA_00162: CCNA_00162 - hypothetical protein, at 171,649 to 172,917 _00162 CCNA_00163: CCNA_00163 - exopolysaccharide transport family protein, at 172,964 to 175,183 _00163 CCNA_00164: CCNA_00164 - O-antigen polymerase, at 175,173 to 177,098 _00164 Position (kb) 172 173 174 175 176Strain fitness (log2 ratio) -2 -1 0 1 2at 172.012 kb on + strand, within CCNA_00162at 172.017 kb on + strand, within CCNA_00162at 172.038 kb on - strand, within CCNA_00162at 172.058 kb on + strand, within CCNA_00162at 172.058 kb on + strand, within CCNA_00162at 172.058 kb on + strand, within CCNA_00162at 172.078 kb on + strand, within CCNA_00162at 172.078 kb on + strand, within CCNA_00162at 172.078 kb on + strand, within CCNA_00162at 172.081 kb on - strand, within CCNA_00162at 172.086 kb on - strand, within CCNA_00162at 172.086 kb on - strand, within CCNA_00162at 172.086 kb on - strand, within CCNA_00162at 172.086 kb on - strand, within CCNA_00162at 172.086 kb on - strand, within CCNA_00162at 172.111 kb on + strand, within CCNA_00162at 172.188 kb on + strand, within CCNA_00162at 172.216 kb on + strand, within CCNA_00162at 172.262 kb on + strand, within CCNA_00162at 172.281 kb on + strand, within CCNA_00162at 172.285 kb on - strand, within CCNA_00162at 172.493 kb on + strand, within CCNA_00162at 172.551 kb on + strand, within CCNA_00162at 172.704 kb on - strand, within CCNA_00162at 172.770 kb on + strand, within CCNA_00162at 172.881 kb on + strandat 172.889 kb on - strandat 172.914 kb on - strandat 172.961 kb on + strandat 172.964 kb on - strandat 173.084 kb on - strandat 173.155 kb on + strandat 173.155 kb on + strandat 173.191 kb on + strand, within CCNA_00163at 173.199 kb on - strand, within CCNA_00163at 173.201 kb on + strand, within CCNA_00163at 173.245 kb on + strand, within CCNA_00163at 173.268 kb on + strand, within CCNA_00163at 173.332 kb on + strand, within CCNA_00163at 173.338 kb on - strand, within CCNA_00163at 173.340 kb on - strand, within CCNA_00163at 173.359 kb on + strand, within CCNA_00163at 173.379 kb on + strand, within CCNA_00163at 173.465 kb on - strand, within CCNA_00163at 173.465 kb on - strand, within CCNA_00163at 173.477 kb on + strand, within CCNA_00163at 173.477 kb on + strand, within CCNA_00163at 173.482 kb on + strand, within CCNA_00163at 173.485 kb on - strand, within CCNA_00163at 173.485 kb on - strand, within CCNA_00163at 173.499 kb on - strand, within CCNA_00163at 173.512 kb on + strand, within CCNA_00163at 173.516 kb on + strand, within CCNA_00163at 173.620 kb on + strand, within CCNA_00163at 173.658 kb on - strand, within CCNA_00163at 173.715 kb on + strand, within CCNA_00163at 173.720 kb on + strand, within CCNA_00163at 173.753 kb on - strand, within CCNA_00163at 173.798 kb on + strand, within CCNA_00163at 173.806 kb on - strand, within CCNA_00163at 173.806 kb on - strand, within CCNA_00163at 173.830 kb on + strand, within CCNA_00163at 173.853 kb on - strand, within CCNA_00163at 173.996 kb on + strand, within CCNA_00163at 174.009 kb on - strand, within CCNA_00163at 174.035 kb on - strand, within CCNA_00163at 174.054 kb on - strand, within CCNA_00163at 174.132 kb on + strand, within CCNA_00163at 174.132 kb on + strand, within CCNA_00163at 174.164 kb on - strand, within CCNA_00163at 174.170 kb on + strand, within CCNA_00163at 174.189 kb on - strand, within CCNA_00163at 174.219 kb on - strand, within CCNA_00163at 174.228 kb on + strand, within CCNA_00163at 174.235 kb on - strand, within CCNA_00163at 174.269 kb on + strand, within CCNA_00163at 174.296 kb on - strand, within CCNA_00163at 174.306 kb on + strand, within CCNA_00163at 174.314 kb on - strand, within CCNA_00163at 174.317 kb on + strand, within CCNA_00163at 174.322 kb on + strand, within CCNA_00163at 174.330 kb on - strand, within CCNA_00163at 174.375 kb on - strand, within CCNA_00163at 174.394 kb on + strand, within CCNA_00163at 174.401 kb on + strand, within CCNA_00163at 174.416 kb on + strand, within CCNA_00163at 174.421 kb on + strand, within CCNA_00163at 174.424 kb on - strand, within CCNA_00163at 174.435 kb on - strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.445 kb on - strand, within CCNA_00163at 174.445 kb on - strand, within CCNA_00163at 174.445 kb on - strand, within CCNA_00163at 174.455 kb on + strand, within CCNA_00163at 174.463 kb on - strand, within CCNA_00163at 174.463 kb on - strand, within CCNA_00163at 174.474 kb on - strand, within CCNA_00163at 174.475 kb on + strand, within CCNA_00163at 174.508 kb on + strand, within CCNA_00163at 174.645 kb on + strand, within CCNA_00163at 174.651 kb on - strand, within CCNA_00163at 174.668 kb on - strand, within CCNA_00163at 174.683 kb on - strand, within CCNA_00163at 174.757 kb on + strand, within CCNA_00163at 174.757 kb on + strand, within CCNA_00163at 174.765 kb on - strand, within CCNA_00163at 174.783 kb on + strand, within CCNA_00163at 174.818 kb on + strand, within CCNA_00163at 174.826 kb on - strand, within CCNA_00163at 174.934 kb on - strand, within CCNA_00163at 174.963 kb on + strandat 175.024 kb on + strandat 175.024 kb on + strandat 175.051 kb on - strandat 175.054 kb on + strandat 175.062 kb on - strandat 175.068 kb on - strandat 175.089 kb on + strandat 175.111 kb on - strandat 175.198 kb on - strandat 175.260 kb on + strandat 175.387 kb on - strand, within CCNA_00164at 175.433 kb on + strand, within CCNA_00164at 175.453 kb on - strand, within CCNA_00164at 175.453 kb on - strand, within CCNA_00164at 175.478 kb on + strand, within CCNA_00164at 175.478 kb on + strand, within CCNA_00164at 175.478 kb on + strand, within CCNA_00164at 175.483 kb on + strand, within CCNA_00164at 175.507 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.653 kb on - strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.686 kb on + strand, within CCNA_00164at 175.686 kb on + strand, within CCNA_00164at 175.694 kb on - strand, within CCNA_00164at 175.694 kb on - strand, within CCNA_00164at 175.703 kb on + strand, within CCNA_00164at 175.740 kb on + strand, within CCNA_00164at 175.748 kb on - strand, within CCNA_00164at 175.761 kb on - strand, within CCNA_00164at 175.766 kb on - strand, within CCNA_00164at 175.767 kb on + strand, within CCNA_00164at 175.910 kb on + strand, within CCNA_00164at 175.918 kb on - strand, within CCNA_00164at 175.918 kb on - strand, within CCNA_00164at 175.975 kb on + strand, within CCNA_00164at 175.985 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.993 kb on - strand, within CCNA_00164at 175.999 kb on - strand, within CCNA_00164at 175.999 kb on - strand, within CCNA_00164at 175.999 kb on - strand, within CCNA_00164at 175.999 kb on - strand, within CCNA_00164at 176.006 kb on + strand, within CCNA_00164at 176.010 kb on + strand, within CCNA_00164at 176.031 kb on + strand, within CCNA_00164at 176.063 kb on + strand, within CCNA_00164at 176.076 kb on - strand, within CCNA_00164at 176.083 kb on - strand, within CCNA_00164at 176.121 kb on + strand, within CCNA_00164

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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172,012 + CCNA_00162 0.29 +0.2
172,017 + CCNA_00162 0.29 +0.1
172,038 - CCNA_00162 0.31 +0.5
172,058 + CCNA_00162 0.32 +0.2
172,058 + CCNA_00162 0.32 +0.4
172,058 + CCNA_00162 0.32 +0.4
172,078 + CCNA_00162 0.34 -0.2
172,078 + CCNA_00162 0.34 +0.5
172,078 + CCNA_00162 0.34 +0.8
172,081 - CCNA_00162 0.34 -0.9
172,086 - CCNA_00162 0.34 -1.2
172,086 - CCNA_00162 0.34 -0.8
172,086 - CCNA_00162 0.34 -2.4
172,086 - CCNA_00162 0.34 +1.1
172,086 - CCNA_00162 0.34 +1.2
172,111 + CCNA_00162 0.36 +0.3
172,188 + CCNA_00162 0.42 +0.3
172,216 + CCNA_00162 0.45 +0.3
172,262 + CCNA_00162 0.48 +0.2
172,281 + CCNA_00162 0.50 +0.5
172,285 - CCNA_00162 0.50 -0.3
172,493 + CCNA_00162 0.67 +0.6
172,551 + CCNA_00162 0.71 +0.1
172,704 - CCNA_00162 0.83 +0.5
172,770 + CCNA_00162 0.88 +0.1
172,881 + +0.5
172,889 - +0.5
172,914 - -1.8
172,961 + -0.5
172,964 - -2.1
173,084 - -0.9
173,155 + +0.4
173,155 + -0.3
173,191 + CCNA_00163 0.10 +0.2
173,199 - CCNA_00163 0.11 +0.7
173,201 + CCNA_00163 0.11 -0.2
173,245 + CCNA_00163 0.13 -0.0
173,268 + CCNA_00163 0.14 +0.2
173,332 + CCNA_00163 0.17 +1.9
173,338 - CCNA_00163 0.17 -0.0
173,340 - CCNA_00163 0.17 -0.3
173,359 + CCNA_00163 0.18 +0.4
173,379 + CCNA_00163 0.19 +0.8
173,465 - CCNA_00163 0.23 -0.0
173,465 - CCNA_00163 0.23 -0.2
173,477 + CCNA_00163 0.23 -0.4
173,477 + CCNA_00163 0.23 -0.4
173,482 + CCNA_00163 0.23 +0.7
173,485 - CCNA_00163 0.23 -0.4
173,485 - CCNA_00163 0.23 +0.5
173,499 - CCNA_00163 0.24 -1.9
173,512 + CCNA_00163 0.25 +0.2
173,516 + CCNA_00163 0.25 +0.2
173,620 + CCNA_00163 0.30 -1.0
173,658 - CCNA_00163 0.31 +0.0
173,715 + CCNA_00163 0.34 -0.5
173,720 + CCNA_00163 0.34 +0.1
173,753 - CCNA_00163 0.36 -0.2
173,798 + CCNA_00163 0.38 -0.0
173,806 - CCNA_00163 0.38 +1.5
173,806 - CCNA_00163 0.38 -0.9
173,830 + CCNA_00163 0.39 +0.3
173,853 - CCNA_00163 0.40 -0.0
173,996 + CCNA_00163 0.46 +0.8
174,009 - CCNA_00163 0.47 +0.6
174,035 - CCNA_00163 0.48 -1.3
174,054 - CCNA_00163 0.49 +0.5
174,132 + CCNA_00163 0.53 +0.3
174,132 + CCNA_00163 0.53 +1.0
174,164 - CCNA_00163 0.54 +0.1
174,170 + CCNA_00163 0.54 +0.3
174,189 - CCNA_00163 0.55 +0.6
174,219 - CCNA_00163 0.57 +1.5
174,228 + CCNA_00163 0.57 +0.9
174,235 - CCNA_00163 0.57 -0.5
174,269 + CCNA_00163 0.59 -0.4
174,296 - CCNA_00163 0.60 -0.1
174,306 + CCNA_00163 0.60 +0.2
174,314 - CCNA_00163 0.61 -0.1
174,317 + CCNA_00163 0.61 +0.0
174,322 + CCNA_00163 0.61 -0.3
174,330 - CCNA_00163 0.62 +0.8
174,375 - CCNA_00163 0.64 +0.3
174,394 + CCNA_00163 0.64 +0.1
174,401 + CCNA_00163 0.65 +0.2
174,416 + CCNA_00163 0.65 -1.0
174,421 + CCNA_00163 0.66 +0.0
174,424 - CCNA_00163 0.66 -0.2
174,435 - CCNA_00163 0.66 -0.0
174,437 + CCNA_00163 0.66 +0.7
174,437 + CCNA_00163 0.66 +0.3
174,437 + CCNA_00163 0.66 +0.0
174,437 + CCNA_00163 0.66 +0.5
174,437 + CCNA_00163 0.66 -0.6
174,445 - CCNA_00163 0.67 +0.2
174,445 - CCNA_00163 0.67 -0.4
174,445 - CCNA_00163 0.67 -0.1
174,455 + CCNA_00163 0.67 +0.4
174,463 - CCNA_00163 0.68 -1.4
174,463 - CCNA_00163 0.68 -0.3
174,474 - CCNA_00163 0.68 +0.3
174,475 + CCNA_00163 0.68 +0.7
174,508 + CCNA_00163 0.70 +0.3
174,645 + CCNA_00163 0.76 +0.0
174,651 - CCNA_00163 0.76 -0.6
174,668 - CCNA_00163 0.77 +0.6
174,683 - CCNA_00163 0.77 -1.6
174,757 + CCNA_00163 0.81 +0.3
174,757 + CCNA_00163 0.81 +0.6
174,765 - CCNA_00163 0.81 -0.3
174,783 + CCNA_00163 0.82 +0.2
174,818 + CCNA_00163 0.84 +0.3
174,826 - CCNA_00163 0.84 -1.5
174,934 - CCNA_00163 0.89 +0.0
174,963 + +0.7
175,024 + +0.2
175,024 + +0.3
175,051 - -0.4
175,054 + -0.1
175,062 - -1.7
175,068 - -0.1
175,089 + -0.3
175,111 - -0.2
175,198 - +1.0
175,260 + +0.7
175,387 - CCNA_00164 0.11 +0.5
175,433 + CCNA_00164 0.13 +1.0
175,453 - CCNA_00164 0.15 -0.4
175,453 - CCNA_00164 0.15 +0.7
175,478 + CCNA_00164 0.16 +0.1
175,478 + CCNA_00164 0.16 +0.1
175,478 + CCNA_00164 0.16 +0.1
175,483 + CCNA_00164 0.16 +0.5
175,507 + CCNA_00164 0.17 +0.1
175,649 + CCNA_00164 0.25 -0.0
175,649 + CCNA_00164 0.25 +0.5
175,649 + CCNA_00164 0.25 -0.1
175,649 + CCNA_00164 0.25 +1.2
175,649 + CCNA_00164 0.25 -0.0
175,649 + CCNA_00164 0.25 +0.2
175,653 - CCNA_00164 0.25 -0.1
175,657 - CCNA_00164 0.25 -0.4
175,657 - CCNA_00164 0.25 +0.4
175,657 - CCNA_00164 0.25 -0.0
175,657 - CCNA_00164 0.25 -1.1
175,657 - CCNA_00164 0.25 -0.6
175,686 + CCNA_00164 0.27 +0.5
175,686 + CCNA_00164 0.27 -0.8
175,694 - CCNA_00164 0.27 +0.0
175,694 - CCNA_00164 0.27 -0.2
175,703 + CCNA_00164 0.28 +1.0
175,740 + CCNA_00164 0.29 -0.9
175,748 - CCNA_00164 0.30 -0.3
175,761 - CCNA_00164 0.31 +0.3
175,766 - CCNA_00164 0.31 +0.1
175,767 + CCNA_00164 0.31 +0.5
175,910 + CCNA_00164 0.38 +0.1
175,918 - CCNA_00164 0.39 +0.6
175,918 - CCNA_00164 0.39 +0.4
175,975 + CCNA_00164 0.42 -0.0
175,985 + CCNA_00164 0.42 -0.6
175,991 + CCNA_00164 0.42 -0.8
175,991 + CCNA_00164 0.42 +0.3
175,991 + CCNA_00164 0.42 +0.3
175,991 + CCNA_00164 0.42 -0.4
175,991 + CCNA_00164 0.42 +0.0
175,991 + CCNA_00164 0.42 +0.4
175,991 + CCNA_00164 0.42 -1.0
175,993 - CCNA_00164 0.43 -0.5
175,999 - CCNA_00164 0.43 +0.0
175,999 - CCNA_00164 0.43 -0.2
175,999 - CCNA_00164 0.43 +0.6
175,999 - CCNA_00164 0.43 -0.3
176,006 + CCNA_00164 0.43 +0.3
176,010 + CCNA_00164 0.43 +1.1
176,031 + CCNA_00164 0.45 +0.6
176,063 + CCNA_00164 0.46 +0.7
176,076 - CCNA_00164 0.47 +0.1
176,083 - CCNA_00164 0.47 -0.2
176,121 + CCNA_00164 0.49 +0.2

Or see this region's nucleotide sequence