Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00078 and CCNA_00079 are separated by 87 nucleotides CCNA_00079 and CCNA_00080 are separated by 193 nucleotides CCNA_00080 and CCNA_00081 are separated by 34 nucleotides CCNA_00081 and CCNA_00082 are separated by 249 nucleotides
CCNA_00078: CCNA_00078 - acyl-CoA dehydrogenase, at 81,533 to 83,326
_00078
CCNA_00079: CCNA_00079 - MerR-family transcriptional regulator, at 83,414 to 83,893
_00079
CCNA_00080: CCNA_00080 - LexA-related transcriptional repressor, at 84,087 to 84,728
_00080
CCNA_00081: CCNA_00081 - hypothetical protein, at 84,763 to 84,972
_00081
CCNA_00082: CCNA_00082 - class 1 lysyl-tRNA synthetase, at 85,222 to 86,880
_00082
Position (kb)
84
85 Strain fitness (log2 ratio)
-1
0
1
2 at 83.087 kb on + strand, within CCNA_00078 at 83.087 kb on + strand, within CCNA_00078 at 83.122 kb on - strand, within CCNA_00078 at 83.165 kb on - strand at 83.165 kb on - strand at 83.165 kb on - strand at 83.181 kb on + strand at 83.199 kb on + strand at 83.220 kb on + strand at 83.222 kb on + strand at 83.287 kb on + strand at 83.287 kb on + strand at 83.290 kb on - strand at 83.295 kb on - strand at 83.295 kb on - strand at 83.322 kb on - strand at 83.322 kb on - strand at 83.333 kb on + strand at 83.333 kb on + strand at 83.333 kb on + strand at 83.338 kb on + strand at 83.340 kb on - strand at 83.341 kb on - strand at 83.341 kb on - strand at 83.459 kb on + strand at 83.494 kb on - strand, within CCNA_00079 at 83.494 kb on - strand, within CCNA_00079 at 83.537 kb on + strand, within CCNA_00079 at 83.538 kb on + strand, within CCNA_00079 at 83.630 kb on + strand, within CCNA_00079 at 83.645 kb on + strand, within CCNA_00079 at 83.739 kb on + strand, within CCNA_00079 at 83.768 kb on - strand, within CCNA_00079 at 83.781 kb on + strand, within CCNA_00079 at 83.783 kb on + strand, within CCNA_00079 at 83.838 kb on + strand, within CCNA_00079 at 83.968 kb on - strand at 84.196 kb on + strand, within CCNA_00080 at 84.196 kb on + strand, within CCNA_00080 at 84.453 kb on - strand, within CCNA_00080 at 84.458 kb on - strand, within CCNA_00080 at 84.541 kb on + strand, within CCNA_00080 at 84.551 kb on + strand, within CCNA_00080 at 84.559 kb on - strand, within CCNA_00080 at 84.594 kb on + strand, within CCNA_00080 at 84.602 kb on - strand, within CCNA_00080 at 84.653 kb on - strand, within CCNA_00080 at 84.751 kb on + strand at 84.753 kb on - strand at 84.758 kb on - strand at 84.758 kb on - strand at 84.766 kb on + strand at 84.769 kb on - strand at 84.782 kb on - strand at 84.795 kb on + strand, within CCNA_00081 at 84.830 kb on + strand, within CCNA_00081 at 84.835 kb on + strand, within CCNA_00081 at 84.838 kb on - strand, within CCNA_00081 at 84.838 kb on - strand, within CCNA_00081 at 84.876 kb on - strand, within CCNA_00081 at 84.886 kb on - strand, within CCNA_00081 at 84.886 kb on - strand, within CCNA_00081 at 84.886 kb on - strand, within CCNA_00081 at 84.886 kb on - strand, within CCNA_00081 at 84.909 kb on - strand, within CCNA_00081 at 84.911 kb on - strand, within CCNA_00081 at 84.928 kb on + strand, within CCNA_00081 at 84.957 kb on + strand at 84.957 kb on + strand at 84.957 kb on + strand at 84.965 kb on - strand at 84.965 kb on - strand at 84.965 kb on - strand at 84.969 kb on - strand at 84.969 kb on - strand at 84.974 kb on + strand at 84.977 kb on - strand at 84.982 kb on - strand at 84.982 kb on - strand at 84.991 kb on - strand at 85.009 kb on + strand at 85.014 kb on + strand at 85.022 kb on - strand at 85.038 kb on - strand at 85.040 kb on + strand at 85.040 kb on + strand at 85.062 kb on + strand at 85.081 kb on + strand at 85.085 kb on + strand at 85.091 kb on - strand at 85.125 kb on + strand at 85.125 kb on + strand at 85.133 kb on - strand at 85.158 kb on - strand at 85.161 kb on - strand at 85.174 kb on + strand at 85.206 kb on + strand at 85.214 kb on - strand at 85.252 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 83,087 + CCNA_00078 0.87 +0.0 83,087 + CCNA_00078 0.87 +0.3 83,122 - CCNA_00078 0.89 +0.7 83,165 - +0.5 83,165 - -0.4 83,165 - +0.2 83,181 + -1.2 83,199 + +0.0 83,220 + +0.4 83,222 + +0.9 83,287 + +0.1 83,287 + +0.5 83,290 - -0.7 83,295 - +1.3 83,295 - +0.4 83,322 - +0.5 83,322 - +0.1 83,333 + -0.4 83,333 + -0.8 83,333 + -0.2 83,338 + +0.5 83,340 - +0.1 83,341 - +0.1 83,341 - +0.2 83,459 + +0.2 83,494 - CCNA_00079 0.17 +1.0 83,494 - CCNA_00079 0.17 -0.2 83,537 + CCNA_00079 0.26 -0.4 83,538 + CCNA_00079 0.26 +0.8 83,630 + CCNA_00079 0.45 +0.4 83,645 + CCNA_00079 0.48 +0.3 83,739 + CCNA_00079 0.68 -0.6 83,768 - CCNA_00079 0.74 +0.1 83,781 + CCNA_00079 0.76 +0.8 83,783 + CCNA_00079 0.77 -0.6 83,838 + CCNA_00079 0.88 -0.4 83,968 - +0.3 84,196 + CCNA_00080 0.17 +1.0 84,196 + CCNA_00080 0.17 +0.3 84,453 - CCNA_00080 0.57 +0.2 84,458 - CCNA_00080 0.58 -0.0 84,541 + CCNA_00080 0.71 +0.1 84,551 + CCNA_00080 0.72 +0.7 84,559 - CCNA_00080 0.74 +0.6 84,594 + CCNA_00080 0.79 +0.2 84,602 - CCNA_00080 0.80 +0.4 84,653 - CCNA_00080 0.88 -0.3 84,751 + +0.2 84,753 - +0.3 84,758 - -0.3 84,758 - +0.6 84,766 + +0.1 84,769 - -0.4 84,782 - +0.1 84,795 + CCNA_00081 0.15 +0.2 84,830 + CCNA_00081 0.32 -0.3 84,835 + CCNA_00081 0.34 -1.3 84,838 - CCNA_00081 0.36 +0.1 84,838 - CCNA_00081 0.36 +0.0 84,876 - CCNA_00081 0.54 +0.1 84,886 - CCNA_00081 0.59 +0.2 84,886 - CCNA_00081 0.59 -1.3 84,886 - CCNA_00081 0.59 -0.1 84,886 - CCNA_00081 0.59 +0.1 84,909 - CCNA_00081 0.70 +0.0 84,911 - CCNA_00081 0.70 +0.1 84,928 + CCNA_00081 0.79 -0.6 84,957 + +0.2 84,957 + -0.5 84,957 + -0.5 84,965 - -0.3 84,965 - -0.4 84,965 - -0.1 84,969 - +0.4 84,969 - +2.0 84,974 + -0.0 84,977 - -0.8 84,982 - +0.2 84,982 - -0.7 84,991 - +0.8 85,009 + -1.1 85,014 + -0.1 85,022 - +0.5 85,038 - -0.4 85,040 + +0.1 85,040 + -0.3 85,062 + +1.3 85,081 + +1.5 85,085 + -0.3 85,091 - +0.5 85,125 + -0.2 85,125 + +1.2 85,133 - -0.0 85,158 - +0.9 85,161 - +0.6 85,174 + +0.5 85,206 + +0.4 85,214 - +0.0 85,252 + -0.0
Or see this region's nucleotide sequence