Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00048 and CCNA_00049 are separated by 119 nucleotides CCNA_00049 and CCNA_00050 are separated by 27 nucleotides CCNA_00050 and CCNA_00051 overlap by 4 nucleotides CCNA_00051 and CCNA_00052 are separated by 8 nucleotides
CCNA_00048: CCNA_00048 - S-adenosylmethionine synthetase, at 50,902 to 52,125
_00048
CCNA_00049: CCNA_00049 - HTH transcriptional regulator, at 52,245 to 52,679
_00049
CCNA_00050: CCNA_00050 - apolipoprotein N-acyltransferase, at 52,707 to 54,299
_00050
CCNA_00051: CCNA_00051 - magnesium and cobalt efflux protein CorC, at 54,296 to 55,222
_00051
CCNA_00052: CCNA_00052 - metal-dependent hydrolase/metalloproteinase, at 55,231 to 55,686
_00052
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2 at 52.230 kb on - strand at 52.251 kb on - strand at 52.258 kb on - strand at 52.324 kb on + strand, within CCNA_00049 at 52.331 kb on + strand, within CCNA_00049 at 52.331 kb on + strand, within CCNA_00049 at 52.331 kb on + strand, within CCNA_00049 at 52.393 kb on + strand, within CCNA_00049 at 52.393 kb on + strand, within CCNA_00049 at 52.430 kb on + strand, within CCNA_00049 at 52.430 kb on + strand, within CCNA_00049 at 52.430 kb on + strand, within CCNA_00049 at 52.438 kb on - strand, within CCNA_00049 at 52.469 kb on + strand, within CCNA_00049 at 52.554 kb on - strand, within CCNA_00049 at 52.577 kb on + strand, within CCNA_00049 at 52.636 kb on + strand at 52.636 kb on + strand at 52.644 kb on - strand at 52.753 kb on + strand at 52.775 kb on + strand at 53.088 kb on - strand, within CCNA_00050 at 53.637 kb on - strand, within CCNA_00050 at 53.958 kb on - strand, within CCNA_00050 at 54.262 kb on + strand at 54.262 kb on + strand at 54.262 kb on + strand at 54.262 kb on + strand at 54.270 kb on - strand at 54.309 kb on + strand at 54.329 kb on - strand at 54.479 kb on - strand, within CCNA_00051 at 54.502 kb on - strand, within CCNA_00051 at 54.534 kb on - strand, within CCNA_00051 at 54.534 kb on - strand, within CCNA_00051 at 54.541 kb on - strand, within CCNA_00051 at 54.551 kb on - strand, within CCNA_00051 at 54.551 kb on - strand, within CCNA_00051 at 54.561 kb on - strand, within CCNA_00051 at 54.564 kb on + strand, within CCNA_00051 at 54.631 kb on - strand, within CCNA_00051 at 54.634 kb on - strand, within CCNA_00051 at 54.667 kb on + strand, within CCNA_00051 at 54.721 kb on - strand, within CCNA_00051 at 54.757 kb on - strand, within CCNA_00051 at 54.757 kb on - strand, within CCNA_00051 at 54.774 kb on - strand, within CCNA_00051 at 54.784 kb on + strand, within CCNA_00051 at 54.793 kb on - strand, within CCNA_00051 at 54.795 kb on + strand, within CCNA_00051 at 54.814 kb on + strand, within CCNA_00051 at 54.870 kb on + strand, within CCNA_00051 at 54.878 kb on - strand, within CCNA_00051 at 54.907 kb on - strand, within CCNA_00051 at 55.011 kb on + strand, within CCNA_00051 at 55.084 kb on - strand, within CCNA_00051 at 55.196 kb on + strand at 55.208 kb on - strand at 55.219 kb on + strand at 55.224 kb on + strand at 55.224 kb on + strand at 55.224 kb on + strand at 55.224 kb on + strand at 55.224 kb on + strand at 55.232 kb on - strand at 55.232 kb on - strand at 55.232 kb on - strand at 55.232 kb on - strand at 55.232 kb on - strand at 55.260 kb on - strand at 55.261 kb on - strand at 55.270 kb on + strand at 55.278 kb on - strand, within CCNA_00052
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 52,230 - +0.7 52,251 - +1.7 52,258 - -1.5 52,324 + CCNA_00049 0.18 -1.4 52,331 + CCNA_00049 0.20 +0.7 52,331 + CCNA_00049 0.20 -0.5 52,331 + CCNA_00049 0.20 -0.4 52,393 + CCNA_00049 0.34 +0.5 52,393 + CCNA_00049 0.34 +0.3 52,430 + CCNA_00049 0.43 -0.3 52,430 + CCNA_00049 0.43 -2.7 52,430 + CCNA_00049 0.43 +0.7 52,438 - CCNA_00049 0.44 +0.3 52,469 + CCNA_00049 0.51 +0.5 52,554 - CCNA_00049 0.71 +0.4 52,577 + CCNA_00049 0.76 -1.0 52,636 + +0.5 52,636 + -1.8 52,644 - -0.5 52,753 + +0.2 52,775 + -0.3 53,088 - CCNA_00050 0.24 +0.2 53,637 - CCNA_00050 0.58 +1.4 53,958 - CCNA_00050 0.79 -0.5 54,262 + -1.3 54,262 + -1.6 54,262 + -0.0 54,262 + +0.2 54,270 - -0.1 54,309 + -1.0 54,329 - +0.1 54,479 - CCNA_00051 0.20 +0.0 54,502 - CCNA_00051 0.22 -0.5 54,534 - CCNA_00051 0.26 +1.3 54,534 - CCNA_00051 0.26 -1.3 54,541 - CCNA_00051 0.26 +0.2 54,551 - CCNA_00051 0.28 +0.1 54,551 - CCNA_00051 0.28 -0.0 54,561 - CCNA_00051 0.29 +0.8 54,564 + CCNA_00051 0.29 -0.5 54,631 - CCNA_00051 0.36 +0.0 54,634 - CCNA_00051 0.36 +0.5 54,667 + CCNA_00051 0.40 -0.9 54,721 - CCNA_00051 0.46 +0.2 54,757 - CCNA_00051 0.50 -0.6 54,757 - CCNA_00051 0.50 +2.0 54,774 - CCNA_00051 0.52 -0.6 54,784 + CCNA_00051 0.53 -1.9 54,793 - CCNA_00051 0.54 -0.4 54,795 + CCNA_00051 0.54 +0.1 54,814 + CCNA_00051 0.56 -0.8 54,870 + CCNA_00051 0.62 +2.0 54,878 - CCNA_00051 0.63 -0.1 54,907 - CCNA_00051 0.66 -0.1 55,011 + CCNA_00051 0.77 -1.2 55,084 - CCNA_00051 0.85 +1.3 55,196 + +0.4 55,208 - +0.7 55,219 + +0.3 55,224 + -1.0 55,224 + -0.3 55,224 + +1.5 55,224 + -0.4 55,224 + -0.5 55,232 - +0.5 55,232 - +0.4 55,232 - +0.1 55,232 - +1.0 55,232 - -0.2 55,260 - -0.7 55,261 - +1.4 55,270 + -0.2 55,278 - CCNA_00052 0.10 -0.3
Or see this region's nucleotide sequence