Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20365

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_20355 and CA264_20360 are separated by 71 nucleotidesCA264_20360 and CA264_20365 are separated by 595 nucleotidesCA264_20365 and CA264_20370 are separated by 422 nucleotides CA264_20355: CA264_20355 - DUF421 domain-containing protein, at 4,688,897 to 4,689,334 _20355 CA264_20360: CA264_20360 - thiol reductase thioredoxin, at 4,689,406 to 4,689,732 _20360 CA264_20365: CA264_20365 - DNA polymerase III subunit alpha, at 4,690,328 to 4,693,951 _20365 CA264_20370: CA264_20370 - MFS transporter, at 4,694,374 to 4,695,693 _20370 Position (kb) 4690 4691 4692 4693 4694Strain fitness (log2 ratio) -2 -1 0 1 2at 4689.773 kb on + strandat 4689.773 kb on + strandat 4689.776 kb on + strandat 4689.780 kb on + strandat 4689.785 kb on + strandat 4689.873 kb on - strandat 4689.878 kb on + strandat 4689.879 kb on - strandat 4689.879 kb on - strandat 4689.886 kb on + strandat 4689.887 kb on - strandat 4689.887 kb on - strandat 4689.887 kb on - strandat 4689.951 kb on + strandat 4689.952 kb on - strandat 4690.005 kb on + strandat 4690.043 kb on - strandat 4690.109 kb on - strandat 4690.130 kb on - strandat 4690.213 kb on + strandat 4690.242 kb on - strandat 4690.266 kb on + strandat 4690.268 kb on + strandat 4690.330 kb on - strandat 4693.985 kb on + strandat 4693.996 kb on + strandat 4693.996 kb on + strandat 4693.997 kb on - strandat 4694.055 kb on + strandat 4694.080 kb on - strandat 4694.187 kb on - strandat 4694.210 kb on + strandat 4694.210 kb on + strandat 4694.210 kb on + strandat 4694.210 kb on + strandat 4694.211 kb on - strandat 4694.211 kb on - strandat 4694.212 kb on + strandat 4694.258 kb on - strandat 4694.312 kb on + strandat 4694.401 kb on - strandat 4694.430 kb on + strandat 4694.431 kb on - strandat 4694.431 kb on - strandat 4694.431 kb on - strandat 4694.454 kb on + strandat 4694.455 kb on - strandat 4694.493 kb on + strandat 4694.494 kb on - strandat 4694.571 kb on + strand, within CA264_20370at 4694.720 kb on + strand, within CA264_20370at 4694.739 kb on + strand, within CA264_20370at 4694.742 kb on - strand, within CA264_20370at 4694.910 kb on + strand, within CA264_20370at 4694.910 kb on + strand, within CA264_20370at 4694.910 kb on + strand, within CA264_20370at 4694.918 kb on + strand, within CA264_20370at 4694.932 kb on + strand, within CA264_20370at 4694.933 kb on - strand, within CA264_20370

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
4,689,773 + +1.2
4,689,773 + +1.3
4,689,776 + +1.2
4,689,780 + -1.2
4,689,785 + +0.5
4,689,873 - -0.3
4,689,878 + -0.7
4,689,879 - -1.6
4,689,879 - -1.1
4,689,886 + +0.2
4,689,887 - -0.3
4,689,887 - -0.9
4,689,887 - +0.7
4,689,951 + +1.0
4,689,952 - -1.8
4,690,005 + -0.2
4,690,043 - +0.3
4,690,109 - +2.0
4,690,130 - -0.7
4,690,213 + +0.0
4,690,242 - +1.1
4,690,266 + -1.6
4,690,268 + -1.3
4,690,330 - -0.2
4,693,985 + +1.1
4,693,996 + +1.2
4,693,996 + -0.2
4,693,997 - -0.4
4,694,055 + +2.2
4,694,080 - +0.7
4,694,187 - +0.4
4,694,210 + +1.2
4,694,210 + +1.7
4,694,210 + +1.3
4,694,210 + +0.9
4,694,211 - +1.8
4,694,211 - -0.1
4,694,212 + +0.9
4,694,258 - +1.1
4,694,312 + +1.0
4,694,401 - -0.8
4,694,430 + -0.6
4,694,431 - -0.4
4,694,431 - -0.9
4,694,431 - -0.4
4,694,454 + +0.5
4,694,455 - +0.1
4,694,493 + +0.7
4,694,494 - -0.4
4,694,571 + CA264_20370 0.15 -0.6
4,694,720 + CA264_20370 0.26 -0.3
4,694,739 + CA264_20370 0.28 -1.1
4,694,742 - CA264_20370 0.28 +0.1
4,694,910 + CA264_20370 0.41 +0.5
4,694,910 + CA264_20370 0.41 -0.2
4,694,910 + CA264_20370 0.41 -0.0
4,694,918 + CA264_20370 0.41 -0.3
4,694,932 + CA264_20370 0.42 -0.4
4,694,933 - CA264_20370 0.42 +0.3

Or see this region's nucleotide sequence