Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18105

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_18100 and CA264_18105 are separated by 123 nucleotidesCA264_18105 and CA264_18110 are separated by 89 nucleotidesCA264_18110 and CA264_18115 are separated by 74 nucleotides CA264_18100: CA264_18100 - ABC-ATPase UvrA, at 4,208,480 to 4,211,395 _18100 CA264_18105: CA264_18105 - hypothetical protein, at 4,211,519 to 4,211,902 _18105 CA264_18110: CA264_18110 - hypothetical protein, at 4,211,992 to 4,212,420 _18110 CA264_18115: CA264_18115 - Rossman fold protein, TIGR00730 family, at 4,212,495 to 4,213,358 _18115 Position (kb) 4211 4212Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4210.734 kb on + strand, within CA264_18100at 4210.957 kb on - strand, within CA264_18100at 4210.957 kb on - strand, within CA264_18100at 4210.960 kb on + strand, within CA264_18100at 4210.960 kb on + strand, within CA264_18100at 4210.961 kb on - strand, within CA264_18100at 4210.961 kb on - strand, within CA264_18100at 4210.961 kb on - strand, within CA264_18100at 4210.997 kb on - strand, within CA264_18100at 4211.181 kb on + strandat 4211.182 kb on - strandat 4211.182 kb on - strandat 4211.275 kb on + strandat 4211.276 kb on - strandat 4211.276 kb on - strandat 4211.276 kb on - strandat 4211.299 kb on - strandat 4211.387 kb on + strandat 4211.631 kb on + strand, within CA264_18105at 4211.647 kb on - strand, within CA264_18105at 4211.700 kb on + strand, within CA264_18105at 4211.702 kb on + strand, within CA264_18105at 4211.702 kb on + strand, within CA264_18105at 4211.703 kb on - strand, within CA264_18105at 4211.827 kb on + strand, within CA264_18105at 4211.849 kb on + strand, within CA264_18105at 4212.230 kb on + strand, within CA264_18110at 4212.332 kb on - strand, within CA264_18110at 4212.332 kb on - strand, within CA264_18110at 4212.376 kb on - strand, within CA264_18110at 4212.386 kb on - strandat 4212.386 kb on - strandat 4212.472 kb on - strandat 4212.472 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
4,210,734 + CA264_18100 0.77 -3.6
4,210,957 - CA264_18100 0.85 -2.3
4,210,957 - CA264_18100 0.85 -2.2
4,210,960 + CA264_18100 0.85 -3.8
4,210,960 + CA264_18100 0.85 -2.2
4,210,961 - CA264_18100 0.85 -1.2
4,210,961 - CA264_18100 0.85 -1.6
4,210,961 - CA264_18100 0.85 -1.4
4,210,997 - CA264_18100 0.86 -0.5
4,211,181 + -2.7
4,211,182 - -2.6
4,211,182 - -3.0
4,211,275 + -0.8
4,211,276 - -2.0
4,211,276 - -1.6
4,211,276 - -4.1
4,211,299 - -0.7
4,211,387 + +0.9
4,211,631 + CA264_18105 0.29 -0.2
4,211,647 - CA264_18105 0.33 -1.6
4,211,700 + CA264_18105 0.47 -0.7
4,211,702 + CA264_18105 0.48 -1.8
4,211,702 + CA264_18105 0.48 +1.2
4,211,703 - CA264_18105 0.48 -2.2
4,211,827 + CA264_18105 0.80 +0.3
4,211,849 + CA264_18105 0.86 -2.1
4,212,230 + CA264_18110 0.55 +1.2
4,212,332 - CA264_18110 0.79 -0.8
4,212,332 - CA264_18110 0.79 -0.3
4,212,376 - CA264_18110 0.90 -0.5
4,212,386 - -1.4
4,212,386 - -0.5
4,212,472 - +0.2
4,212,472 - -1.6

Or see this region's nucleotide sequence